Wall clock time and date at job start Tue Mar 31 2020 00:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50704 * 109.47329 * 2 1 4 4 C 1.34508 * 125.79308 * 89.99212 * 3 2 1 5 5 C 1.41378 * 106.84571 * 179.97438 * 4 3 2 6 6 C 1.34521 * 106.83530 * 0.22855 * 5 4 3 7 7 C 1.50697 * 125.78696 * 179.76730 * 6 5 4 8 8 N 1.46909 * 109.47038 * 90.00273 * 7 6 5 9 9 C 1.46896 * 110.99958 * 189.99928 * 8 7 6 10 10 C 1.50701 * 109.46933 * 164.64750 * 9 8 7 11 11 H 1.08005 * 120.00201 * 0.53242 * 10 9 8 12 12 C 1.37879 * 120.00396 * 180.53679 * 10 9 8 13 13 N 1.31504 * 120.00118 * 179.97438 * 12 10 9 14 14 Si 1.86801 * 119.99439 * 0.02562 * 12 10 9 15 15 H 1.48504 * 109.47239 * 90.00089 * 14 12 10 16 16 H 1.48500 * 109.46984 * 209.99610 * 14 12 10 17 17 H 1.48495 * 109.47333 * 329.99498 * 14 12 10 18 18 C 1.46905 * 110.99481 * 66.04493 * 8 7 6 19 19 C 1.53000 * 109.47196 * 62.74027 * 18 8 7 20 20 C 1.52999 * 109.47026 * 182.58640 * 19 18 8 21 21 C 1.52991 * 109.47017 * 174.99854 * 20 19 18 22 22 C 1.53002 * 109.46732 * 294.99708 * 20 19 18 23 23 O 1.34297 * 108.42187 * 359.63527 * 6 5 4 24 24 H 1.08993 * 109.47207 * 300.00032 * 1 2 3 25 25 H 1.09001 * 109.47179 * 60.00342 * 1 2 3 26 26 H 1.09006 * 109.46783 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47667 * 239.99785 * 2 1 3 28 28 H 1.09001 * 109.47179 * 119.99657 * 2 1 3 29 29 H 1.08004 * 126.57830 * 359.94983 * 4 3 2 30 30 H 1.07996 * 126.58770 * 179.97438 * 5 4 3 31 31 H 1.08994 * 109.47324 * 210.00146 * 7 6 5 32 32 H 1.09002 * 109.47361 * 330.00635 * 7 6 5 33 33 H 1.09001 * 109.47241 * 284.63992 * 9 8 7 34 34 H 1.08996 * 109.47589 * 44.64570 * 9 8 7 35 35 H 0.97009 * 120.00077 * 179.97438 * 13 12 10 36 36 H 1.08998 * 109.46441 * 182.73990 * 18 8 7 37 37 H 1.08999 * 109.47203 * 302.73674 * 18 8 7 38 38 H 1.08998 * 109.46760 * 302.58588 * 19 18 8 39 39 H 1.09004 * 109.47101 * 62.57910 * 19 18 8 40 40 H 1.08999 * 109.47106 * 54.99417 * 20 19 18 41 41 H 1.09008 * 109.47578 * 59.99905 * 21 20 19 42 42 H 1.09004 * 109.47550 * 179.97438 * 21 20 19 43 43 H 1.09002 * 109.47631 * 299.99830 * 21 20 19 44 44 H 1.08999 * 109.47088 * 299.99720 * 22 20 19 45 45 H 1.08996 * 109.47206 * 60.00023 * 22 20 19 46 46 H 1.08999 * 109.47069 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2945 2.1626 1.0910 5 6 2.7409 3.4230 0.6320 6 6 2.7200 3.3778 -0.7123 7 6 3.1107 4.5010 -1.6380 8 7 4.5445 4.4073 -1.9437 9 6 5.0127 5.6096 -2.6459 10 6 6.5185 5.6580 -2.6099 11 1 7.0727 4.8695 -2.1224 12 6 7.1889 6.7088 -3.1993 13 7 8.5029 6.7512 -3.1675 14 14 6.2304 8.0730 -4.0418 15 1 5.9254 9.1436 -3.0589 16 1 7.0418 8.6359 -5.1509 17 1 4.9623 7.5241 -4.5855 18 6 4.8390 3.1957 -2.7204 19 6 4.1120 3.2625 -4.0650 20 6 4.3665 1.9724 -4.8471 21 6 3.5408 1.9855 -6.1349 22 6 5.8530 1.8721 -5.1953 23 8 2.2948 2.1611 -1.0895 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 2.1846 1.8545 2.1204 30 1 3.0374 4.2626 1.2431 31 1 2.5367 4.4269 -2.5616 32 1 2.9035 5.4570 -1.1570 33 1 4.6749 5.5801 -3.6818 34 1 4.6090 6.4963 -2.1572 35 1 8.9745 7.4904 -3.5825 36 1 5.9133 3.1260 -2.8913 37 1 4.5014 2.3189 -2.1679 38 1 3.0418 3.3786 -3.8939 39 1 4.4828 4.1133 -4.6367 40 1 4.0773 1.1156 -4.2386 41 1 3.8300 2.8424 -6.7435 42 1 3.7224 1.0666 -6.6924 43 1 2.4817 2.0570 -5.8869 44 1 6.1422 2.7289 -5.8038 45 1 6.4413 1.8628 -4.2778 46 1 6.0343 0.9532 -5.7529 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093100859.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:19 Heat of formation + Delta-G solvation = -3.959739 kcal Electronic energy + Delta-G solvation = -22707.601346 eV Core-core repulsion = 19598.332913 eV Total energy + Delta-G solvation = -3109.268433 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.32946 -37.98127 -35.25680 -34.17500 -32.75301 -32.35038 -29.86339 -28.75033 -27.04659 -26.76476 -24.96166 -23.31068 -22.49123 -21.37593 -20.24740 -19.84099 -19.09017 -16.85892 -16.24645 -16.00094 -15.28978 -14.95139 -14.58775 -14.43244 -14.23545 -13.94661 -13.50690 -13.16737 -13.03863 -12.61271 -12.50092 -12.47015 -12.38673 -12.18223 -11.95439 -11.67974 -11.59561 -11.38920 -11.26834 -11.10189 -10.86667 -10.62828 -10.50705 -10.37548 -10.25133 -9.95834 -9.80688 -9.55331 -9.30111 -8.55807 -8.04450 -7.32820 -6.04044 -4.00700 1.97048 2.89168 3.13732 3.27643 3.35544 3.36283 4.41755 4.68155 4.84812 4.93354 5.09310 5.14094 5.20023 5.22172 5.28464 5.31230 5.33143 5.40431 5.61148 5.63234 5.72807 5.80392 5.84275 5.88253 5.96970 5.97756 6.06038 6.09453 6.12079 6.14240 6.25546 6.30087 6.39803 6.44613 6.48342 6.57118 6.68740 6.81215 6.83265 6.97171 7.04354 7.47907 7.59462 7.86395 7.99277 8.65872 9.05993 9.57423 11.09184 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.015879 B = 0.005205 C = 0.004318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.910323 B = 5377.955556 C = 6482.359758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.040 4.040 3 C -0.026 4.026 4 C -0.208 4.208 5 C -0.200 4.200 6 C 0.013 3.987 7 C 0.123 3.877 8 N -0.519 5.519 9 C 0.158 3.842 10 C -0.503 4.503 11 H 0.080 0.920 12 C 0.069 3.931 13 N -0.900 5.900 14 Si 0.871 3.129 15 H -0.276 1.276 16 H -0.286 1.286 17 H -0.268 1.268 18 C 0.065 3.935 19 C -0.152 4.152 20 C -0.088 4.088 21 C -0.145 4.145 22 C -0.147 4.147 23 O -0.173 6.173 24 H 0.058 0.942 25 H 0.057 0.943 26 H 0.062 0.938 27 H 0.078 0.922 28 H 0.089 0.911 29 H 0.141 0.859 30 H 0.146 0.854 31 H 0.045 0.955 32 H 0.097 0.903 33 H 0.000 1.000 34 H 0.022 0.978 35 H 0.263 0.737 36 H 0.088 0.912 37 H 0.056 0.944 38 H 0.053 0.947 39 H 0.072 0.928 40 H 0.063 0.937 41 H 0.053 0.947 42 H 0.049 0.951 43 H 0.048 0.952 44 H 0.056 0.944 45 H 0.061 0.939 46 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.840 -11.848 2.101 19.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.078 4.078 3 C -0.076 4.076 4 C -0.227 4.227 5 C -0.220 4.220 6 C -0.037 4.037 7 C -0.005 4.005 8 N -0.242 5.242 9 C 0.032 3.968 10 C -0.541 4.541 11 H 0.098 0.902 12 C -0.132 4.132 13 N -0.539 5.539 14 Si 0.698 3.302 15 H -0.202 1.202 16 H -0.212 1.212 17 H -0.193 1.193 18 C -0.063 4.063 19 C -0.191 4.191 20 C -0.108 4.108 21 C -0.202 4.202 22 C -0.204 4.204 23 O -0.070 6.070 24 H 0.077 0.923 25 H 0.076 0.924 26 H 0.081 0.919 27 H 0.097 0.903 28 H 0.108 0.892 29 H 0.159 0.841 30 H 0.163 0.837 31 H 0.063 0.937 32 H 0.115 0.885 33 H 0.017 0.983 34 H 0.040 0.960 35 H 0.073 0.927 36 H 0.107 0.893 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.090 0.910 40 H 0.081 0.919 41 H 0.072 0.928 42 H 0.068 0.932 43 H 0.067 0.933 44 H 0.075 0.925 45 H 0.080 0.920 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -14.449 -11.836 2.193 18.806 hybrid contribution -0.738 1.030 -0.955 1.587 sum -15.187 -10.806 1.238 18.680 Atomic orbital electron populations 1.21784 0.94338 1.01923 1.02559 1.20004 0.96015 0.87980 1.03753 1.22270 1.05768 0.95071 0.84525 1.21484 1.07452 0.94836 0.98926 1.21498 1.07229 0.99273 0.94004 1.22456 1.01490 0.85007 0.94750 1.20647 0.91593 0.92506 0.95735 1.62275 1.10742 1.04402 1.46745 1.20274 0.97523 0.87137 0.91834 1.20967 0.88652 1.09013 1.35485 0.90161 1.24862 0.94692 0.97697 0.95940 1.69886 1.06649 1.32113 1.45247 0.86933 0.80437 0.83019 0.79797 1.20177 1.21236 1.19277 1.22134 1.01630 0.92026 0.90533 1.22279 1.00131 0.98028 0.98654 1.20988 0.95740 0.98029 0.95996 1.21837 0.99467 1.01255 0.97654 1.21863 0.95648 1.00981 1.01929 1.83968 1.65541 1.22581 1.34905 0.92294 0.92374 0.91946 0.90347 0.89241 0.84115 0.83662 0.93706 0.88478 0.98272 0.96000 0.92708 0.89341 0.92574 0.92886 0.90958 0.91885 0.92830 0.93222 0.93267 0.92466 0.91952 0.93630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.89 37.16 0.37 -0.87 16 2 C -0.04 -0.39 6.47 -27.88 -0.18 -0.57 16 3 C -0.03 -0.36 6.58 -35.62 -0.23 -0.59 16 4 C -0.21 -2.90 10.81 -39.71 -0.43 -3.33 16 5 C -0.20 -3.16 10.81 -39.70 -0.43 -3.59 16 6 C 0.01 0.23 5.89 -35.62 -0.21 0.02 16 7 C 0.12 2.16 5.29 -4.97 -0.03 2.13 16 8 N -0.52 -10.80 4.65 -237.51 -1.10 -11.90 16 9 C 0.16 3.72 3.64 -4.98 -0.02 3.70 16 10 C -0.50 -14.03 9.13 -34.44 -0.31 -14.35 16 11 H 0.08 2.47 7.70 -52.48 -0.40 2.07 16 12 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 13 N -0.90 -27.33 13.96 55.43 0.77 -26.55 16 14 Si 0.87 21.19 27.46 -169.99 -4.67 16.52 16 15 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 16 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 17 H -0.27 -6.24 6.56 56.52 0.37 -5.87 16 18 C 0.06 1.26 4.72 -3.82 -0.02 1.24 16 19 C -0.15 -2.63 4.04 -26.73 -0.11 -2.73 16 20 C -0.09 -1.31 2.92 -90.62 -0.26 -1.57 16 21 C -0.14 -1.88 9.19 37.15 0.34 -1.53 16 22 C -0.15 -2.23 8.95 37.16 0.33 -1.90 16 23 O -0.17 -2.82 9.96 5.72 0.06 -2.76 16 24 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.14 1.61 8.06 -52.48 -0.42 1.18 16 30 H 0.15 2.15 8.06 -52.49 -0.42 1.73 16 31 H 0.05 0.76 6.04 -51.93 -0.31 0.44 16 32 H 0.10 1.59 7.87 -51.93 -0.41 1.18 16 33 H 0.00 -0.01 4.97 -51.93 -0.26 -0.26 16 34 H 0.02 0.51 7.22 -51.93 -0.37 0.14 16 35 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 36 H 0.09 1.91 5.75 -51.93 -0.30 1.61 16 37 H 0.06 1.06 6.66 -51.93 -0.35 0.71 16 38 H 0.05 0.89 6.21 -51.93 -0.32 0.56 16 39 H 0.07 1.40 6.33 -51.93 -0.33 1.07 16 40 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 41 H 0.05 0.71 8.14 -51.92 -0.42 0.29 16 42 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.06 1.01 6.62 -51.93 -0.34 0.67 16 46 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 359.95 15.07 5.42 5.42 Total: -1.00 -30.32 359.95 -8.87 -39.18 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -8.06 Total: 2.16 kcal Atomic # 6 Polarization: -20.79 SS G_CDS: -1.29 Total: -22.08 kcal Atomic # 7 Polarization: -38.12 SS G_CDS: -0.33 Total: -38.46 kcal Atomic # 8 Polarization: -2.82 SS G_CDS: 0.06 Total: -2.76 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.67 Total: 16.52 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.32 -8.87 -39.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093100859.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.224 kcal (2) G-P(sol) polarization free energy of solvation -30.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds