Wall clock time and date at job start Tue Mar 31 2020 00:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50704 * 109.47329 * 2 1 4 4 C 1.34508 * 125.79308 * 89.99212 * 3 2 1 5 5 C 1.41378 * 106.84571 * 179.97438 * 4 3 2 6 6 C 1.34521 * 106.83530 * 0.22855 * 5 4 3 7 7 C 1.50697 * 125.78696 * 179.76730 * 6 5 4 8 8 N 1.46909 * 109.47038 * 90.00273 * 7 6 5 9 9 C 1.46896 * 110.99958 * 189.99928 * 8 7 6 10 10 C 1.50701 * 109.46933 * 164.64750 * 9 8 7 11 11 H 1.08005 * 120.00201 * 0.53242 * 10 9 8 12 12 C 1.37879 * 120.00396 * 180.53679 * 10 9 8 13 13 N 1.31504 * 120.00118 * 179.97438 * 12 10 9 14 14 Si 1.86801 * 119.99439 * 0.02562 * 12 10 9 15 15 H 1.48504 * 109.47239 * 90.00089 * 14 12 10 16 16 H 1.48500 * 109.46984 * 209.99610 * 14 12 10 17 17 H 1.48495 * 109.47333 * 329.99498 * 14 12 10 18 18 C 1.46905 * 110.99481 * 66.04493 * 8 7 6 19 19 C 1.53000 * 109.47196 * 62.74027 * 18 8 7 20 20 C 1.52999 * 109.47026 * 182.58640 * 19 18 8 21 21 C 1.52991 * 109.47017 * 174.99854 * 20 19 18 22 22 C 1.53002 * 109.46732 * 294.99708 * 20 19 18 23 23 O 1.34297 * 108.42187 * 359.63527 * 6 5 4 24 24 H 1.08993 * 109.47207 * 300.00032 * 1 2 3 25 25 H 1.09001 * 109.47179 * 60.00342 * 1 2 3 26 26 H 1.09006 * 109.46783 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47667 * 239.99785 * 2 1 3 28 28 H 1.09001 * 109.47179 * 119.99657 * 2 1 3 29 29 H 1.08004 * 126.57830 * 359.94983 * 4 3 2 30 30 H 1.07996 * 126.58770 * 179.97438 * 5 4 3 31 31 H 1.08994 * 109.47324 * 210.00146 * 7 6 5 32 32 H 1.09002 * 109.47361 * 330.00635 * 7 6 5 33 33 H 1.09001 * 109.47241 * 284.63992 * 9 8 7 34 34 H 1.08996 * 109.47589 * 44.64570 * 9 8 7 35 35 H 0.97009 * 120.00077 * 179.97438 * 13 12 10 36 36 H 1.08998 * 109.46441 * 182.73990 * 18 8 7 37 37 H 1.08999 * 109.47203 * 302.73674 * 18 8 7 38 38 H 1.08998 * 109.46760 * 302.58588 * 19 18 8 39 39 H 1.09004 * 109.47101 * 62.57910 * 19 18 8 40 40 H 1.08999 * 109.47106 * 54.99417 * 20 19 18 41 41 H 1.09008 * 109.47578 * 59.99905 * 21 20 19 42 42 H 1.09004 * 109.47550 * 179.97438 * 21 20 19 43 43 H 1.09002 * 109.47631 * 299.99830 * 21 20 19 44 44 H 1.08999 * 109.47088 * 299.99720 * 22 20 19 45 45 H 1.08996 * 109.47206 * 60.00023 * 22 20 19 46 46 H 1.08999 * 109.47069 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2945 2.1626 1.0910 5 6 2.7409 3.4230 0.6320 6 6 2.7200 3.3778 -0.7123 7 6 3.1107 4.5010 -1.6380 8 7 4.5445 4.4073 -1.9437 9 6 5.0127 5.6096 -2.6459 10 6 6.5185 5.6580 -2.6099 11 1 7.0727 4.8695 -2.1224 12 6 7.1889 6.7088 -3.1993 13 7 8.5029 6.7512 -3.1675 14 14 6.2304 8.0730 -4.0418 15 1 5.9254 9.1436 -3.0589 16 1 7.0418 8.6359 -5.1509 17 1 4.9623 7.5241 -4.5855 18 6 4.8390 3.1957 -2.7204 19 6 4.1120 3.2625 -4.0650 20 6 4.3665 1.9724 -4.8471 21 6 3.5408 1.9855 -6.1349 22 6 5.8530 1.8721 -5.1953 23 8 2.2948 2.1611 -1.0895 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 2.1846 1.8545 2.1204 30 1 3.0374 4.2626 1.2431 31 1 2.5367 4.4269 -2.5616 32 1 2.9035 5.4570 -1.1570 33 1 4.6749 5.5801 -3.6818 34 1 4.6090 6.4963 -2.1572 35 1 8.9745 7.4904 -3.5825 36 1 5.9133 3.1260 -2.8913 37 1 4.5014 2.3189 -2.1679 38 1 3.0418 3.3786 -3.8939 39 1 4.4828 4.1133 -4.6367 40 1 4.0773 1.1156 -4.2386 41 1 3.8300 2.8424 -6.7435 42 1 3.7224 1.0666 -6.6924 43 1 2.4817 2.0570 -5.8869 44 1 6.1422 2.7289 -5.8038 45 1 6.4413 1.8628 -4.2778 46 1 6.0343 0.9532 -5.7529 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093100859.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:18 Heat of formation + Delta-G solvation = -21.153564 kcal Electronic energy + Delta-G solvation = -22708.346926 eV Core-core repulsion = 19598.332913 eV Total energy + Delta-G solvation = -3110.014013 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.49380 -39.51405 -36.59731 -35.09864 -34.64584 -33.71553 -31.22903 -30.39576 -28.43625 -28.00995 -26.26877 -24.81231 -23.73392 -22.61753 -21.64825 -21.02187 -20.55738 -18.90776 -17.47012 -17.30184 -16.79721 -16.35564 -16.19693 -15.66930 -15.41612 -15.20506 -14.86001 -14.58008 -14.43964 -13.94592 -13.87375 -13.67241 -13.61232 -13.28922 -13.17803 -13.10395 -12.83331 -12.77311 -12.54030 -12.34832 -12.33132 -12.00079 -11.94050 -11.83860 -11.68767 -11.60420 -11.38947 -11.30594 -10.75473 -10.72317 -9.23909 -8.92693 -8.25454 -6.27766 0.80336 1.35503 1.36572 1.46722 1.73055 2.02058 2.35493 3.07838 3.32460 3.69511 3.86622 3.93678 3.98677 4.10475 4.19076 4.19755 4.35390 4.38131 4.40649 4.50848 4.59984 4.64008 4.68670 4.75910 4.78934 4.83188 4.91170 4.96950 4.98230 5.02160 5.04700 5.07362 5.16913 5.19140 5.23519 5.25839 5.35446 5.37905 5.47648 5.51209 5.56664 5.70743 5.97773 6.26130 6.37193 6.62312 6.77387 7.34647 8.91475 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.015879 B = 0.005205 C = 0.004318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.910323 B = 5377.955556 C = 6482.359758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.041 4.041 3 C -0.023 4.023 4 C -0.219 4.219 5 C -0.206 4.206 6 C -0.013 4.013 7 C 0.128 3.872 8 N -0.538 5.538 9 C 0.170 3.830 10 C -0.507 4.507 11 H 0.032 0.968 12 C 0.010 3.990 13 N -0.949 5.949 14 Si 0.942 3.058 15 H -0.265 1.265 16 H -0.284 1.284 17 H -0.248 1.248 18 C 0.075 3.925 19 C -0.141 4.141 20 C -0.085 4.085 21 C -0.140 4.140 22 C -0.145 4.145 23 O -0.187 6.187 24 H 0.059 0.941 25 H 0.045 0.955 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.111 0.889 29 H 0.166 0.834 30 H 0.149 0.851 31 H 0.054 0.946 32 H 0.106 0.894 33 H 0.004 0.996 34 H 0.030 0.970 35 H 0.266 0.734 36 H 0.054 0.946 37 H 0.061 0.939 38 H 0.063 0.937 39 H 0.049 0.951 40 H 0.072 0.928 41 H 0.047 0.953 42 H 0.068 0.932 43 H 0.058 0.942 44 H 0.040 0.960 45 H 0.040 0.960 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.673 -12.774 1.822 21.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.078 4.078 3 C -0.073 4.073 4 C -0.238 4.238 5 C -0.226 4.226 6 C -0.063 4.063 7 C 0.000 4.000 8 N -0.261 5.261 9 C 0.043 3.957 10 C -0.545 4.545 11 H 0.051 0.949 12 C -0.187 4.187 13 N -0.590 5.590 14 Si 0.766 3.234 15 H -0.190 1.190 16 H -0.210 1.210 17 H -0.172 1.172 18 C -0.053 4.053 19 C -0.180 4.180 20 C -0.104 4.104 21 C -0.197 4.197 22 C -0.203 4.203 23 O -0.084 6.084 24 H 0.078 0.922 25 H 0.065 0.935 26 H 0.104 0.896 27 H 0.101 0.899 28 H 0.130 0.870 29 H 0.184 0.816 30 H 0.167 0.833 31 H 0.072 0.928 32 H 0.124 0.876 33 H 0.021 0.979 34 H 0.048 0.952 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.067 0.933 40 H 0.091 0.909 41 H 0.066 0.934 42 H 0.087 0.913 43 H 0.077 0.923 44 H 0.059 0.941 45 H 0.059 0.941 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -17.306 -12.779 1.925 21.599 hybrid contribution 0.182 1.172 -0.749 1.403 sum -17.123 -11.607 1.176 20.720 Atomic orbital electron populations 1.21761 0.93055 1.03323 1.02042 1.20248 0.97003 0.85520 1.05061 1.23124 1.04045 0.96266 0.83828 1.21797 1.07564 0.94068 1.00359 1.21771 1.06576 1.00310 0.93932 1.22273 1.03660 0.85505 0.94890 1.20603 0.89217 0.93673 0.96476 1.62117 1.13533 1.03664 1.46795 1.20008 0.94479 0.88763 0.92434 1.21156 0.91068 1.07665 1.34652 0.94925 1.25775 0.95600 1.00582 0.96726 1.70050 1.08742 1.33380 1.46817 0.85792 0.79473 0.79457 0.78727 1.18972 1.20975 1.17205 1.21958 0.99816 0.91726 0.91839 1.22154 1.00057 0.98598 0.97214 1.20982 0.95645 0.96837 0.96978 1.21790 0.99486 1.02045 0.96391 1.21842 0.95910 1.01551 1.00951 1.83947 1.65852 1.22552 1.36089 0.92171 0.93542 0.89607 0.89920 0.87040 0.81616 0.83301 0.92837 0.87563 0.97865 0.95222 0.92551 0.92730 0.92082 0.91854 0.93255 0.90946 0.93425 0.91273 0.92302 0.94051 0.94053 0.91104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.89 71.98 0.71 -1.28 16 2 C -0.04 -0.69 6.47 29.85 0.19 -0.50 16 3 C -0.02 -0.58 6.58 24.83 0.16 -0.42 16 4 C -0.22 -5.70 10.81 22.19 0.24 -5.46 16 5 C -0.21 -6.33 10.81 22.19 0.24 -6.09 16 6 C -0.01 -0.44 5.89 24.83 0.15 -0.29 16 7 C 0.13 4.40 5.29 85.55 0.45 4.85 16 8 N -0.54 -22.75 4.65 -905.36 -4.21 -26.96 16 9 C 0.17 8.05 3.64 85.56 0.31 8.36 16 10 C -0.51 -29.43 9.13 25.60 0.23 -29.20 16 11 H 0.03 2.15 7.70 -2.91 -0.02 2.12 16 12 C 0.01 0.59 5.47 84.66 0.46 1.06 16 13 N -0.95 -59.70 13.96 21.45 0.30 -59.40 16 14 Si 0.94 43.82 27.46 68.60 1.88 45.70 16 15 H -0.26 -11.80 7.11 99.48 0.71 -11.10 16 16 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 17 H -0.25 -10.69 6.56 99.48 0.65 -10.04 16 18 C 0.07 2.97 4.72 86.30 0.41 3.38 16 19 C -0.14 -4.85 4.04 30.59 0.12 -4.73 16 20 C -0.09 -2.44 2.92 -10.80 -0.03 -2.47 16 21 C -0.14 -3.30 9.19 71.98 0.66 -2.64 16 22 C -0.15 -4.43 8.95 71.98 0.64 -3.79 16 23 O -0.19 -5.86 9.96 -2.44 -0.02 -5.88 16 24 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 25 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.09 0.80 8.14 -2.38 -0.02 0.78 16 27 H 0.08 1.33 8.14 -2.39 -0.02 1.32 16 28 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.17 3.34 8.06 -2.91 -0.02 3.32 16 30 H 0.15 4.33 8.06 -2.91 -0.02 4.30 16 31 H 0.05 1.74 6.04 -2.39 -0.01 1.72 16 32 H 0.11 3.39 7.87 -2.39 -0.02 3.37 16 33 H 0.00 0.18 4.97 -2.39 -0.01 0.16 16 34 H 0.03 1.37 7.22 -2.39 -0.02 1.35 16 35 H 0.27 15.59 8.31 -92.70 -0.77 14.82 16 36 H 0.05 2.52 5.75 -2.39 -0.01 2.50 16 37 H 0.06 2.34 6.66 -2.39 -0.02 2.33 16 38 H 0.06 2.04 6.21 -2.39 -0.01 2.02 16 39 H 0.05 1.92 6.33 -2.39 -0.02 1.90 16 40 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 41 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16 42 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 43 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 45 H 0.04 1.41 6.62 -2.39 -0.02 1.39 16 46 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -67.87 359.95 3.78 -64.09 By element: Atomic # 1 Polarization: 20.80 SS G_CDS: 0.87 Total: 21.68 kcal Atomic # 6 Polarization: -44.19 SS G_CDS: 4.96 Total: -39.23 kcal Atomic # 7 Polarization: -82.44 SS G_CDS: -3.91 Total: -86.36 kcal Atomic # 8 Polarization: -5.86 SS G_CDS: -0.02 Total: -5.88 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 1.88 Total: 45.70 kcal Total: -67.87 3.78 -64.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093100859.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.937 kcal (2) G-P(sol) polarization free energy of solvation -67.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds