Wall clock time and date at job start Tue Mar 31 2020 01:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47007 * 2 1 4 4 C 1.52998 * 109.47251 * 304.27975 * 3 2 1 5 5 C 1.52997 * 109.47278 * 293.36617 * 4 3 2 6 6 C 1.53005 * 109.47410 * 64.28012 * 3 2 1 7 7 N 1.46906 * 109.47044 * 63.59029 * 6 3 2 8 8 C 1.46897 * 111.00092 * 199.54052 * 7 6 3 9 9 C 1.50703 * 109.46635 * 67.07255 * 8 7 6 10 10 H 1.07994 * 120.00149 * 4.45600 * 9 8 7 11 11 C 1.37880 * 119.99413 * 184.46222 * 9 8 7 12 12 N 1.31511 * 120.00227 * 354.80363 * 11 9 8 13 13 Si 1.86803 * 119.99904 * 174.80498 * 11 9 8 14 14 H 1.48503 * 109.46934 * 5.00060 * 13 11 9 15 15 H 1.48494 * 109.47149 * 124.99744 * 13 11 9 16 16 H 1.48496 * 109.47238 * 245.00256 * 13 11 9 17 17 C 1.46904 * 110.99886 * 75.58693 * 7 6 3 18 18 C 1.50690 * 109.47272 * 190.00050 * 17 7 6 19 19 C 1.34519 * 125.78906 * 90.00080 * 18 17 7 20 20 C 1.41385 * 106.83919 * 179.73931 * 19 18 17 21 21 C 1.34515 * 106.84410 * 0.02562 * 20 19 18 22 22 C 1.50701 * 125.79136 * 180.02562 * 21 20 19 23 23 O 1.34302 * 125.79235 * 269.69836 * 18 17 7 24 24 H 1.09001 * 109.47482 * 306.22425 * 1 2 3 25 25 H 1.09000 * 109.46906 * 66.22626 * 1 2 3 26 26 H 1.08994 * 109.47228 * 186.22325 * 1 2 3 27 27 H 1.08990 * 109.47560 * 239.99714 * 2 1 3 28 28 H 1.09004 * 109.46516 * 119.99366 * 2 1 3 29 29 H 1.09000 * 109.47289 * 184.28095 * 3 2 1 30 30 H 1.09005 * 109.47144 * 53.36333 * 4 3 2 31 31 H 1.09000 * 109.47562 * 173.36399 * 4 3 2 32 32 H 1.08999 * 109.47261 * 185.63493 * 5 4 3 33 33 H 1.09004 * 109.47166 * 305.63366 * 5 4 3 34 34 H 1.09001 * 109.47000 * 65.63284 * 5 4 3 35 35 H 1.09001 * 109.47319 * 303.59457 * 6 3 2 36 36 H 1.09005 * 109.47217 * 183.58928 * 6 3 2 37 37 H 1.09000 * 109.46766 * 187.06814 * 8 7 6 38 38 H 1.08999 * 109.46987 * 307.07472 * 8 7 6 39 39 H 0.96997 * 120.00180 * 180.02562 * 12 11 9 40 40 H 1.09003 * 109.46753 * 70.00021 * 17 7 6 41 41 H 1.09004 * 109.47016 * 310.00325 * 17 7 6 42 42 H 1.07990 * 126.58150 * 359.69826 * 19 18 17 43 43 H 1.08004 * 126.57984 * 179.97438 * 20 19 18 44 44 H 1.08992 * 109.46937 * 89.99716 * 22 21 20 45 45 H 1.09005 * 109.46690 * 209.99762 * 22 21 20 46 46 H 1.09000 * 109.46900 * 329.99650 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4440 2.1941 -1.1919 5 6 1.9958 1.6073 -2.4926 6 6 1.6198 2.1321 1.2996 7 7 2.2614 1.4623 2.4389 8 6 1.5568 1.7644 3.6920 9 6 0.1865 1.1380 3.6613 10 1 -0.1029 0.5127 2.8297 11 6 -0.6978 1.3634 4.6949 12 7 -0.3118 2.0395 5.7548 13 14 -2.4440 0.7084 4.5897 14 1 -2.5908 -0.1147 3.3624 15 1 -2.7321 -0.1269 5.7832 16 1 -3.3972 1.8459 4.5398 17 6 3.6814 1.8269 2.5323 18 6 4.3609 0.9443 3.5472 19 6 4.9521 -0.2368 3.2923 20 6 5.4609 -0.7140 4.5221 21 6 5.1497 0.2036 5.4551 22 6 5.4915 0.1216 6.9205 23 8 4.4839 1.2061 4.8587 24 1 -0.3634 0.6073 0.8290 25 1 -0.3633 0.4143 -0.9405 26 1 -0.3633 -1.0215 0.1114 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 3.1273 1.4435 -0.0767 30 1 0.3587 2.0930 -1.1794 31 1 1.7114 3.2488 -1.1270 32 1 1.6506 2.2051 -3.3362 33 1 3.0854 1.6171 -2.4622 34 1 1.6447 0.5817 -2.6062 35 1 0.5366 2.0749 1.4075 36 1 1.9276 3.1774 1.2723 37 1 2.1218 1.3614 4.5326 38 1 1.4603 2.8443 3.8033 39 1 -0.9338 2.1978 6.4821 40 1 3.7695 2.8688 2.8399 41 1 4.1554 1.6938 1.5597 42 1 5.0238 -0.7268 2.3326 43 1 5.9960 -1.6385 4.6820 44 1 6.4621 0.5861 7.0937 45 1 4.7303 0.6432 7.5008 46 1 5.5290 -0.9238 7.2268 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093100990.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:17:55 Heat of formation + Delta-G solvation = -5.965018 kcal Electronic energy + Delta-G solvation = -22981.684875 eV Core-core repulsion = 19872.329487 eV Total energy + Delta-G solvation = -3109.355388 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.02971 -38.09389 -35.36764 -32.68585 -32.60306 -31.55523 -30.75176 -28.45399 -28.14719 -25.72688 -23.85998 -23.26370 -22.87480 -21.29749 -20.33881 -19.53408 -18.40103 -16.49410 -16.14517 -15.69460 -15.30372 -14.76026 -14.67494 -14.14000 -13.96201 -13.78254 -13.05588 -12.79621 -12.68183 -12.60761 -12.55274 -12.28328 -12.07963 -11.92626 -11.83815 -11.61255 -11.56041 -11.30011 -11.06766 -10.89626 -10.77319 -10.63101 -10.37287 -10.00960 -9.97687 -9.85740 -9.51206 -9.35200 -9.13860 -8.37242 -7.77095 -7.24121 -5.98881 -3.98885 2.24344 3.11426 3.31622 3.39503 3.43631 3.44676 4.44978 4.88263 5.11834 5.21230 5.30742 5.36218 5.36688 5.40584 5.51264 5.55866 5.62194 5.66770 5.73971 5.79661 5.87261 5.88828 5.97249 6.06697 6.11471 6.18317 6.19112 6.25618 6.29074 6.30216 6.47430 6.50225 6.57039 6.66832 6.69614 6.75842 7.01447 7.05388 7.08208 7.35107 7.37442 7.75477 7.87693 8.13339 8.20770 8.55764 9.09783 9.64292 11.12071 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.009755 B = 0.007709 C = 0.004776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2869.615453 B = 3631.094232 C = 5860.726021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.105 4.105 3 C -0.082 4.082 4 C -0.124 4.124 5 C -0.148 4.148 6 C 0.064 3.936 7 N -0.526 5.526 8 C 0.190 3.810 9 C -0.504 4.504 10 H 0.069 0.931 11 C 0.056 3.944 12 N -0.896 5.896 13 Si 0.890 3.110 14 H -0.271 1.271 15 H -0.286 1.286 16 H -0.285 1.285 17 C 0.129 3.871 18 C 0.021 3.979 19 C -0.205 4.205 20 C -0.217 4.217 21 C -0.022 4.022 22 C -0.071 4.071 23 O -0.167 6.167 24 H 0.072 0.928 25 H 0.043 0.957 26 H 0.042 0.958 27 H 0.043 0.957 28 H 0.078 0.922 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.054 0.946 32 H 0.046 0.954 33 H 0.049 0.951 34 H 0.054 0.946 35 H 0.094 0.906 36 H 0.018 0.982 37 H 0.035 0.965 38 H -0.010 1.010 39 H 0.259 0.741 40 H 0.037 0.963 41 H 0.091 0.909 42 H 0.141 0.859 43 H 0.139 0.861 44 H 0.073 0.927 45 H 0.076 0.924 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.258 -2.103 -8.187 12.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.143 4.143 3 C -0.101 4.101 4 C -0.162 4.162 5 C -0.205 4.205 6 C -0.064 4.064 7 N -0.251 5.251 8 C 0.066 3.934 9 C -0.542 4.542 10 H 0.087 0.913 11 C -0.145 4.145 12 N -0.536 5.536 13 Si 0.718 3.282 14 H -0.195 1.195 15 H -0.212 1.212 16 H -0.211 1.211 17 C 0.001 3.999 18 C -0.030 4.030 19 C -0.225 4.225 20 C -0.236 4.236 21 C -0.073 4.073 22 C -0.127 4.127 23 O -0.063 6.063 24 H 0.091 0.909 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.096 0.904 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.112 0.888 36 H 0.037 0.963 37 H 0.053 0.947 38 H 0.008 0.992 39 H 0.069 0.931 40 H 0.055 0.945 41 H 0.109 0.891 42 H 0.159 0.841 43 H 0.157 0.843 44 H 0.092 0.908 45 H 0.095 0.905 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 9.041 -2.277 -7.936 12.244 hybrid contribution -0.898 0.327 0.195 0.975 sum 8.144 -1.950 -7.741 11.404 Atomic orbital electron populations 1.21910 0.96498 1.01318 1.01554 1.21349 0.95781 0.95854 1.01296 1.21206 0.99129 0.95884 0.93856 1.21621 1.01153 0.99059 0.94336 1.21765 1.00647 1.00940 0.97185 1.22143 1.01384 0.93542 0.89344 1.62152 0.98782 1.57834 1.06342 1.19804 0.93749 0.94531 0.85362 1.21228 0.97426 1.29580 1.06003 0.91327 1.24976 0.98685 0.95610 0.95276 1.69991 1.35151 1.41359 1.07066 0.86554 0.84894 0.78680 0.78027 1.19523 1.21213 1.21097 1.20528 0.91313 0.94315 0.93711 1.22268 1.01135 0.97929 0.81691 1.21351 1.05412 0.96508 0.99231 1.21427 1.07825 1.01486 0.92837 1.22291 0.99922 0.89105 0.95950 1.20225 1.01954 1.03281 0.87253 1.84036 1.59120 1.42240 1.20946 0.90880 0.93849 0.93839 0.93821 0.90357 0.92262 0.91440 0.92693 0.93498 0.93167 0.92662 0.88823 0.96331 0.94705 0.99189 0.93119 0.94483 0.89127 0.84078 0.84268 0.90794 0.90493 0.89860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.50 9.12 37.16 0.34 -2.16 16 2 C -0.11 -1.63 5.33 -26.73 -0.14 -1.78 16 3 C -0.08 -1.22 2.19 -90.62 -0.20 -1.42 16 4 C -0.12 -1.60 5.12 -26.73 -0.14 -1.73 16 5 C -0.15 -1.63 9.56 37.16 0.36 -1.28 16 6 C 0.06 1.18 4.07 -3.82 -0.02 1.16 16 7 N -0.53 -11.03 3.73 -237.51 -0.89 -11.92 16 8 C 0.19 4.98 4.59 -4.98 -0.02 4.95 16 9 C -0.50 -13.96 8.15 -34.44 -0.28 -14.24 16 10 H 0.07 1.86 6.16 -52.49 -0.32 1.54 16 11 C 0.06 1.58 5.45 -17.82 -0.10 1.49 16 12 N -0.90 -26.91 13.29 55.43 0.74 -26.17 16 13 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 14 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 15 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 16 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 17 C 0.13 2.39 5.32 -4.98 -0.03 2.36 16 18 C 0.02 0.40 5.90 -35.63 -0.21 0.19 16 19 C -0.21 -3.60 10.81 -39.70 -0.43 -4.03 16 20 C -0.22 -3.58 10.81 -39.70 -0.43 -4.01 16 21 C -0.02 -0.39 7.32 -35.62 -0.26 -0.65 16 22 C -0.07 -0.92 10.42 36.01 0.38 -0.54 16 23 O -0.17 -3.48 9.77 5.71 0.06 -3.42 16 24 H 0.07 1.37 4.79 -51.93 -0.25 1.12 16 25 H 0.04 0.61 6.58 -51.93 -0.34 0.26 16 26 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.04 0.60 6.96 -51.93 -0.36 0.24 16 28 H 0.08 1.41 7.59 -51.93 -0.39 1.02 16 29 H 0.06 0.85 6.68 -51.93 -0.35 0.50 16 30 H 0.07 0.90 6.13 -51.93 -0.32 0.58 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.05 0.61 6.99 -51.93 -0.36 0.25 16 35 H 0.09 1.93 4.89 -51.93 -0.25 1.68 16 36 H 0.02 0.34 8.00 -51.93 -0.42 -0.08 16 37 H 0.03 1.01 6.32 -51.93 -0.33 0.68 16 38 H -0.01 -0.28 8.11 -51.93 -0.42 -0.70 16 39 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 40 H 0.04 0.70 8.12 -51.93 -0.42 0.27 16 41 H 0.09 1.41 6.57 -51.93 -0.34 1.07 16 42 H 0.14 2.18 8.06 -52.49 -0.42 1.75 16 43 H 0.14 1.88 8.06 -52.48 -0.42 1.46 16 44 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 46 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 357.12 15.07 5.38 5.38 Total: -1.00 -30.65 357.12 -8.73 -39.38 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -7.82 Total: 1.75 kcal Atomic # 6 Polarization: -20.50 SS G_CDS: -1.18 Total: -21.68 kcal Atomic # 7 Polarization: -37.94 SS G_CDS: -0.15 Total: -38.09 kcal Atomic # 8 Polarization: -3.48 SS G_CDS: 0.06 Total: -3.42 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.65 -8.73 -39.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093100990.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.416 kcal (2) G-P(sol) polarization free energy of solvation -30.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds