Wall clock time and date at job start Tue Mar 31 2020 01:17:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47007 * 2 1 4 4 C 1.52998 * 109.47251 * 304.27975 * 3 2 1 5 5 C 1.52997 * 109.47278 * 293.36617 * 4 3 2 6 6 C 1.53005 * 109.47410 * 64.28012 * 3 2 1 7 7 N 1.46906 * 109.47044 * 63.59029 * 6 3 2 8 8 C 1.46897 * 111.00092 * 199.54052 * 7 6 3 9 9 C 1.50703 * 109.46635 * 67.07255 * 8 7 6 10 10 H 1.07994 * 120.00149 * 4.45600 * 9 8 7 11 11 C 1.37880 * 119.99413 * 184.46222 * 9 8 7 12 12 N 1.31511 * 120.00227 * 354.80363 * 11 9 8 13 13 Si 1.86803 * 119.99904 * 174.80498 * 11 9 8 14 14 H 1.48503 * 109.46934 * 5.00060 * 13 11 9 15 15 H 1.48494 * 109.47149 * 124.99744 * 13 11 9 16 16 H 1.48496 * 109.47238 * 245.00256 * 13 11 9 17 17 C 1.46904 * 110.99886 * 75.58693 * 7 6 3 18 18 C 1.50690 * 109.47272 * 190.00050 * 17 7 6 19 19 C 1.34519 * 125.78906 * 90.00080 * 18 17 7 20 20 C 1.41385 * 106.83919 * 179.73931 * 19 18 17 21 21 C 1.34515 * 106.84410 * 0.02562 * 20 19 18 22 22 C 1.50701 * 125.79136 * 180.02562 * 21 20 19 23 23 O 1.34302 * 125.79235 * 269.69836 * 18 17 7 24 24 H 1.09001 * 109.47482 * 306.22425 * 1 2 3 25 25 H 1.09000 * 109.46906 * 66.22626 * 1 2 3 26 26 H 1.08994 * 109.47228 * 186.22325 * 1 2 3 27 27 H 1.08990 * 109.47560 * 239.99714 * 2 1 3 28 28 H 1.09004 * 109.46516 * 119.99366 * 2 1 3 29 29 H 1.09000 * 109.47289 * 184.28095 * 3 2 1 30 30 H 1.09005 * 109.47144 * 53.36333 * 4 3 2 31 31 H 1.09000 * 109.47562 * 173.36399 * 4 3 2 32 32 H 1.08999 * 109.47261 * 185.63493 * 5 4 3 33 33 H 1.09004 * 109.47166 * 305.63366 * 5 4 3 34 34 H 1.09001 * 109.47000 * 65.63284 * 5 4 3 35 35 H 1.09001 * 109.47319 * 303.59457 * 6 3 2 36 36 H 1.09005 * 109.47217 * 183.58928 * 6 3 2 37 37 H 1.09000 * 109.46766 * 187.06814 * 8 7 6 38 38 H 1.08999 * 109.46987 * 307.07472 * 8 7 6 39 39 H 0.96997 * 120.00180 * 180.02562 * 12 11 9 40 40 H 1.09003 * 109.46753 * 70.00021 * 17 7 6 41 41 H 1.09004 * 109.47016 * 310.00325 * 17 7 6 42 42 H 1.07990 * 126.58150 * 359.69826 * 19 18 17 43 43 H 1.08004 * 126.57984 * 179.97438 * 20 19 18 44 44 H 1.08992 * 109.46937 * 89.99716 * 22 21 20 45 45 H 1.09005 * 109.46690 * 209.99762 * 22 21 20 46 46 H 1.09000 * 109.46900 * 329.99650 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4440 2.1941 -1.1919 5 6 1.9958 1.6073 -2.4926 6 6 1.6198 2.1321 1.2996 7 7 2.2614 1.4623 2.4389 8 6 1.5568 1.7644 3.6920 9 6 0.1865 1.1380 3.6613 10 1 -0.1029 0.5127 2.8297 11 6 -0.6978 1.3634 4.6949 12 7 -0.3118 2.0395 5.7548 13 14 -2.4440 0.7084 4.5897 14 1 -2.5908 -0.1147 3.3624 15 1 -2.7321 -0.1269 5.7832 16 1 -3.3972 1.8459 4.5398 17 6 3.6814 1.8269 2.5323 18 6 4.3609 0.9443 3.5472 19 6 4.9521 -0.2368 3.2923 20 6 5.4609 -0.7140 4.5221 21 6 5.1497 0.2036 5.4551 22 6 5.4915 0.1216 6.9205 23 8 4.4839 1.2061 4.8587 24 1 -0.3634 0.6073 0.8290 25 1 -0.3633 0.4143 -0.9405 26 1 -0.3633 -1.0215 0.1114 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 3.1273 1.4435 -0.0767 30 1 0.3587 2.0930 -1.1794 31 1 1.7114 3.2488 -1.1270 32 1 1.6506 2.2051 -3.3362 33 1 3.0854 1.6171 -2.4622 34 1 1.6447 0.5817 -2.6062 35 1 0.5366 2.0749 1.4075 36 1 1.9276 3.1774 1.2723 37 1 2.1218 1.3614 4.5326 38 1 1.4603 2.8443 3.8033 39 1 -0.9338 2.1978 6.4821 40 1 3.7695 2.8688 2.8399 41 1 4.1554 1.6938 1.5597 42 1 5.0238 -0.7268 2.3326 43 1 5.9960 -1.6385 4.6820 44 1 6.4621 0.5861 7.0937 45 1 4.7303 0.6432 7.5008 46 1 5.5290 -0.9238 7.2268 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093100990.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:17:54 Heat of formation + Delta-G solvation = -22.766503 kcal Electronic energy + Delta-G solvation = -22982.413442 eV Core-core repulsion = 19872.329487 eV Total energy + Delta-G solvation = -3110.083955 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -43.43130 -39.54580 -36.83488 -34.72517 -34.01079 -32.91732 -31.86291 -30.00022 -29.73847 -27.32170 -25.21896 -24.95874 -24.15216 -22.68800 -21.94266 -20.95675 -19.67684 -18.56904 -17.62338 -17.20299 -16.76726 -16.41767 -15.99024 -15.71805 -15.47731 -15.22532 -14.40738 -14.17402 -14.08948 -13.76499 -13.68257 -13.64137 -13.59176 -13.39735 -13.31258 -13.19627 -12.77163 -12.71635 -12.58290 -12.57784 -12.35673 -12.02694 -11.99990 -11.74068 -11.32868 -11.15787 -11.04602 -10.94303 -10.70077 -10.56645 -9.18218 -8.96116 -8.18927 -6.26926 0.84656 1.37395 1.37982 1.51414 1.77349 2.14343 2.39243 3.13613 3.35538 3.81188 4.00315 4.05732 4.12012 4.22037 4.23408 4.34135 4.40717 4.53351 4.59710 4.63892 4.70566 4.71822 4.77717 4.87466 4.88220 4.93084 4.97931 5.01719 5.10112 5.14155 5.18716 5.19260 5.27563 5.34012 5.37054 5.42814 5.48968 5.54583 5.65654 5.75418 5.78252 5.83225 6.09379 6.32064 6.41263 6.59495 6.90955 7.41533 8.92810 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.009755 B = 0.007709 C = 0.004776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2869.615453 B = 3631.094232 C = 5860.726021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.101 4.101 3 C -0.071 4.071 4 C -0.121 4.121 5 C -0.143 4.143 6 C 0.064 3.936 7 N -0.525 5.525 8 C 0.211 3.789 9 C -0.511 4.511 10 H 0.072 0.928 11 C 0.000 4.000 12 N -0.936 5.936 13 Si 0.960 3.040 14 H -0.259 1.259 15 H -0.283 1.283 16 H -0.278 1.278 17 C 0.132 3.868 18 C -0.018 4.018 19 C -0.198 4.198 20 C -0.219 4.219 21 C -0.041 4.041 22 C -0.070 4.070 23 O -0.205 6.205 24 H 0.039 0.961 25 H 0.065 0.935 26 H 0.043 0.957 27 H 0.071 0.929 28 H 0.050 0.950 29 H 0.072 0.928 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.068 0.932 36 H 0.018 0.982 37 H 0.001 0.999 38 H -0.047 1.047 39 H 0.261 0.739 40 H 0.025 0.975 41 H 0.126 0.874 42 H 0.164 0.836 43 H 0.173 0.827 44 H 0.099 0.901 45 H 0.062 0.938 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.795 -3.696 -10.228 14.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.138 4.138 3 C -0.090 4.090 4 C -0.159 4.159 5 C -0.201 4.201 6 C -0.063 4.063 7 N -0.249 5.249 8 C 0.085 3.915 9 C -0.549 4.549 10 H 0.090 0.910 11 C -0.197 4.197 12 N -0.577 5.577 13 Si 0.785 3.215 14 H -0.183 1.183 15 H -0.209 1.209 16 H -0.203 1.203 17 C 0.004 3.996 18 C -0.068 4.068 19 C -0.218 4.218 20 C -0.238 4.238 21 C -0.090 4.090 22 C -0.126 4.126 23 O -0.103 6.103 24 H 0.058 0.942 25 H 0.084 0.916 26 H 0.062 0.938 27 H 0.089 0.911 28 H 0.069 0.931 29 H 0.091 0.909 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.087 0.913 36 H 0.036 0.964 37 H 0.019 0.981 38 H -0.030 1.030 39 H 0.070 0.930 40 H 0.043 0.957 41 H 0.143 0.857 42 H 0.182 0.818 43 H 0.191 0.809 44 H 0.118 0.882 45 H 0.081 0.919 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 9.590 -3.874 -10.006 14.391 hybrid contribution -0.990 0.829 0.849 1.545 sum 8.601 -3.046 -9.156 12.926 Atomic orbital electron populations 1.21863 0.96974 1.00805 1.01325 1.21295 0.95312 0.95998 1.01196 1.21137 0.99952 0.95460 0.92422 1.21589 1.00778 0.99124 0.94375 1.21726 1.01070 1.01110 0.96150 1.22195 0.99816 0.94000 0.90319 1.62097 0.99966 1.58161 1.04651 1.19351 0.93492 0.91638 0.87009 1.21532 0.98187 1.29310 1.05916 0.90982 1.25890 1.03139 0.95908 0.94812 1.70135 1.36758 1.42885 1.07948 0.85466 0.79425 0.78264 0.78354 1.18257 1.20892 1.20344 1.20637 0.89784 0.93699 0.95465 1.22529 1.03175 0.99455 0.81664 1.21728 1.03901 0.95517 1.00645 1.21851 1.07613 1.02343 0.92007 1.23248 0.99186 0.88594 0.98013 1.20428 1.02679 1.05082 0.84396 1.84009 1.60326 1.44036 1.21911 0.94195 0.91617 0.93769 0.91077 0.93142 0.90925 0.91989 0.92375 0.92146 0.92405 0.92391 0.91345 0.96362 0.98132 1.02954 0.92992 0.95672 0.85665 0.81832 0.80943 0.88223 0.91904 0.87266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.72 9.12 71.98 0.66 -4.06 16 2 C -0.10 -2.95 5.33 30.59 0.16 -2.79 16 3 C -0.07 -2.01 2.19 -10.79 -0.02 -2.03 16 4 C -0.12 -2.84 5.12 30.59 0.16 -2.68 16 5 C -0.14 -2.65 9.56 71.98 0.69 -1.96 16 6 C 0.06 2.42 4.07 86.30 0.35 2.77 16 7 N -0.52 -22.72 3.73 -905.33 -3.38 -26.09 16 8 C 0.21 11.71 4.59 85.56 0.39 12.11 16 9 C -0.51 -29.40 8.15 25.60 0.21 -29.19 16 10 H 0.07 4.02 6.16 -2.91 -0.02 4.00 16 11 C 0.00 0.00 5.45 84.66 0.46 0.46 16 12 N -0.94 -58.40 13.29 21.45 0.29 -58.11 16 13 Si 0.96 45.33 29.54 68.60 2.03 47.36 16 14 H -0.26 -11.60 7.11 99.48 0.71 -10.90 16 15 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 16 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 17 C 0.13 4.97 5.32 85.55 0.46 5.42 16 18 C -0.02 -0.73 5.90 24.83 0.15 -0.59 16 19 C -0.20 -6.76 10.81 22.19 0.24 -6.52 16 20 C -0.22 -6.93 10.81 22.19 0.24 -6.69 16 21 C -0.04 -1.42 7.32 24.83 0.18 -1.24 16 22 C -0.07 -1.75 10.42 71.24 0.74 -1.01 16 23 O -0.21 -8.91 9.77 -2.49 -0.02 -8.93 16 24 H 0.04 1.50 4.79 -2.39 -0.01 1.49 16 25 H 0.06 1.71 6.58 -2.39 -0.02 1.69 16 26 H 0.04 1.32 8.14 -2.39 -0.02 1.31 16 27 H 0.07 1.72 6.96 -2.39 -0.02 1.70 16 28 H 0.05 1.77 7.59 -2.38 -0.02 1.75 16 29 H 0.07 1.89 6.68 -2.39 -0.02 1.87 16 30 H 0.06 1.53 6.13 -2.38 -0.01 1.52 16 31 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.06 0.97 8.14 -2.39 -0.02 0.96 16 33 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 34 H 0.06 1.05 6.99 -2.39 -0.02 1.03 16 35 H 0.07 2.93 4.89 -2.39 -0.01 2.92 16 36 H 0.02 0.68 8.00 -2.38 -0.02 0.66 16 37 H 0.00 0.04 6.32 -2.39 -0.02 0.02 16 38 H -0.05 -2.90 8.11 -2.39 -0.02 -2.92 16 39 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 40 H 0.03 1.00 8.12 -2.39 -0.02 0.98 16 41 H 0.13 3.75 6.57 -2.38 -0.02 3.73 16 42 H 0.16 4.67 8.06 -2.92 -0.02 4.65 16 43 H 0.17 4.13 8.06 -2.91 -0.02 4.11 16 44 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 45 H 0.06 1.75 8.14 -2.38 -0.02 1.73 16 46 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -69.97 357.12 4.91 -65.06 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: 0.94 Total: 18.73 kcal Atomic # 6 Polarization: -43.06 SS G_CDS: 5.06 Total: -38.00 kcal Atomic # 7 Polarization: -81.12 SS G_CDS: -3.09 Total: -84.21 kcal Atomic # 8 Polarization: -8.91 SS G_CDS: -0.02 Total: -8.93 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -69.97 4.91 -65.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093100990.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.290 kcal (2) G-P(sol) polarization free energy of solvation -69.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds