Wall clock time and date at job start Tue Mar 31 2020 01:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.47326 * 2 1 4 4 C 1.52992 * 109.47105 * 65.91825 * 3 2 1 5 5 C 1.52997 * 109.47439 * 186.49135 * 4 3 2 6 6 C 1.53002 * 109.47032 * 185.92075 * 3 2 1 7 7 N 1.46897 * 109.47275 * 63.50969 * 6 3 2 8 8 C 1.46899 * 110.99964 * 194.81405 * 7 6 3 9 9 C 1.50704 * 109.47145 * 170.00141 * 8 7 6 10 10 H 1.07996 * 119.99846 * 359.97438 * 9 8 7 11 11 C 1.37878 * 119.99986 * 180.02562 * 9 8 7 12 12 N 1.31517 * 119.99873 * 359.97438 * 11 9 8 13 13 Si 1.86794 * 119.99912 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47103 * 59.99778 * 13 11 9 15 15 H 1.48501 * 109.46961 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.46946 * 299.99585 * 13 11 9 17 17 C 1.46902 * 110.99966 * 70.86261 * 7 6 3 18 18 C 1.50699 * 109.47465 * 59.19926 * 17 7 6 19 19 O 1.34304 * 125.79235 * 276.18138 * 18 17 7 20 20 C 1.34302 * 109.47837 * 180.23670 * 19 18 17 21 21 C 1.34511 * 108.41827 * 359.76683 * 20 19 18 22 22 C 1.34507 * 125.78882 * 96.01244 * 18 17 7 23 23 C 1.50699 * 126.58194 * 0.04131 * 22 18 17 24 24 H 1.09009 * 109.46801 * 63.58794 * 1 2 3 25 25 H 1.08999 * 109.47299 * 183.58210 * 1 2 3 26 26 H 1.09000 * 109.47176 * 303.58943 * 1 2 3 27 27 H 1.09005 * 109.47412 * 239.99956 * 2 1 3 28 28 H 1.09002 * 109.47101 * 119.99943 * 2 1 3 29 29 H 1.09004 * 109.47235 * 305.91979 * 3 2 1 30 30 H 1.09000 * 109.47575 * 306.49345 * 4 3 2 31 31 H 1.09005 * 109.47134 * 66.49348 * 4 3 2 32 32 H 1.09004 * 109.47275 * 303.59560 * 5 4 3 33 33 H 1.08999 * 109.47192 * 63.59275 * 5 4 3 34 34 H 1.08998 * 109.47837 * 183.59531 * 5 4 3 35 35 H 1.09001 * 109.47010 * 303.50416 * 6 3 2 36 36 H 1.09007 * 109.46572 * 183.50804 * 6 3 2 37 37 H 1.09010 * 109.47049 * 289.99840 * 8 7 6 38 38 H 1.09002 * 109.47138 * 49.99745 * 8 7 6 39 39 H 0.97001 * 119.99702 * 179.97438 * 12 11 9 40 40 H 1.08999 * 109.46932 * 299.20020 * 17 7 6 41 41 H 1.09002 * 109.47342 * 179.19983 * 17 7 6 42 42 H 1.08003 * 125.78677 * 179.74943 * 20 19 18 43 43 H 1.08005 * 126.57581 * 179.97438 * 21 20 19 44 44 H 1.09000 * 109.46999 * 264.37713 * 23 22 18 45 45 H 1.09000 * 109.47697 * 144.37558 * 23 22 18 46 46 H 1.09004 * 109.46811 * 24.37839 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6551 2.1195 1.3169 5 6 2.0206 3.6038 1.2532 6 6 3.5628 1.4450 -0.1488 7 7 3.9285 0.8710 -1.4506 8 6 5.3571 0.5318 -1.4937 9 6 5.6455 -0.2716 -2.7357 10 1 4.8472 -0.5070 -3.4239 11 6 6.9282 -0.7070 -2.9927 12 7 7.9002 -0.4208 -2.1543 13 14 7.2857 -1.7022 -4.5326 14 1 6.9311 -0.9023 -5.7323 15 1 8.7299 -2.0453 -4.5760 16 1 6.4804 -2.9498 -4.5136 17 6 3.5703 1.7813 -2.5466 18 6 4.2846 3.0953 -2.3621 19 8 3.8723 4.1113 -1.5864 20 6 4.7522 5.1226 -1.6679 21 6 5.7446 4.7566 -2.4989 22 6 5.4448 3.4485 -2.9438 23 6 6.2645 2.6129 -3.8929 24 1 -0.3633 0.4572 -0.9205 25 1 -0.3634 -1.0256 0.0642 26 1 -0.3633 0.5685 0.8561 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.5927 1.9861 -0.8323 30 1 0.5821 2.0162 1.4786 31 1 2.1935 1.6477 2.1389 32 1 3.0822 3.7073 1.0282 33 1 1.4348 4.0891 0.4726 34 1 1.8055 4.0726 2.2135 35 1 4.0067 0.8492 0.6487 36 1 3.9322 2.4686 -0.0863 37 1 5.9479 1.4478 -1.5082 38 1 5.6180 -0.0548 -0.6127 39 1 8.8025 -0.7274 -2.3350 40 1 2.4934 1.9493 -2.5420 41 1 3.8649 1.3381 -3.4979 42 1 4.6758 6.0693 -1.1536 43 1 6.6051 5.3486 -2.7738 44 1 7.0457 2.0935 -3.3379 45 1 6.7202 3.2578 -4.6443 46 1 5.6204 1.8828 -4.3832 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093101030.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:17:58 Heat of formation + Delta-G solvation = -21.100631 kcal Electronic energy + Delta-G solvation = -23688.936705 eV Core-core repulsion = 20578.924988 eV Total energy + Delta-G solvation = -3110.011718 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.44507 -39.43239 -36.92437 -34.73768 -34.51072 -32.51253 -31.44826 -29.89141 -29.12563 -27.29580 -26.35217 -24.67547 -23.34063 -22.66144 -22.00254 -20.79579 -19.96873 -18.43848 -17.60346 -17.38566 -16.81447 -16.22598 -15.71859 -15.56192 -15.20617 -15.09316 -14.68484 -14.57937 -14.19878 -14.03380 -13.75716 -13.56043 -13.46387 -13.19659 -13.03481 -12.85613 -12.67177 -12.60120 -12.47799 -12.34207 -12.20678 -12.10197 -11.98605 -11.80260 -11.47692 -11.19141 -11.18719 -10.86761 -10.55299 -10.33974 -9.24742 -8.92802 -8.09389 -6.15552 0.93696 1.44397 1.45369 1.52144 1.78066 2.25599 2.45472 3.24354 3.39765 3.90782 3.95763 4.07471 4.12853 4.19573 4.24035 4.43279 4.48311 4.56275 4.62560 4.70306 4.71330 4.80691 4.85239 4.92858 4.97287 5.00503 5.03953 5.05591 5.17092 5.18931 5.23813 5.29960 5.34654 5.36699 5.41896 5.44341 5.51134 5.54604 5.62649 5.73648 5.75659 5.79751 6.13821 6.32022 6.41008 6.67663 6.96782 7.51396 9.01248 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.014373 B = 0.007029 C = 0.005243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.674153 B = 3982.385836 C = 5339.518724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.112 4.112 3 C -0.068 4.068 4 C -0.115 4.115 5 C -0.146 4.146 6 C 0.056 3.944 7 N -0.520 5.520 8 C 0.208 3.792 9 C -0.499 4.499 10 H 0.061 0.939 11 C 0.018 3.982 12 N -0.930 5.930 13 Si 0.945 3.055 14 H -0.265 1.265 15 H -0.290 1.290 16 H -0.273 1.273 17 C 0.145 3.855 18 C -0.052 4.052 19 O -0.177 6.177 20 C -0.045 4.045 21 C -0.233 4.233 22 C -0.180 4.180 23 C -0.067 4.067 24 H 0.052 0.948 25 H 0.054 0.946 26 H 0.064 0.936 27 H 0.055 0.945 28 H 0.048 0.952 29 H 0.066 0.934 30 H 0.081 0.919 31 H 0.054 0.946 32 H 0.038 0.962 33 H 0.054 0.946 34 H 0.062 0.938 35 H 0.044 0.956 36 H 0.033 0.967 37 H -0.018 1.018 38 H -0.013 1.013 39 H 0.259 0.741 40 H 0.091 0.909 41 H 0.094 0.906 42 H 0.238 0.762 43 H 0.156 0.844 44 H 0.049 0.951 45 H 0.062 0.938 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.813 9.296 2.846 15.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.150 4.150 3 C -0.087 4.087 4 C -0.153 4.153 5 C -0.204 4.204 6 C -0.072 4.072 7 N -0.242 5.242 8 C 0.082 3.918 9 C -0.538 4.538 10 H 0.079 0.921 11 C -0.180 4.180 12 N -0.571 5.571 13 Si 0.771 3.229 14 H -0.189 1.189 15 H -0.216 1.216 16 H -0.198 1.198 17 C 0.017 3.983 18 C -0.103 4.103 19 O -0.073 6.073 20 C -0.112 4.112 21 C -0.252 4.252 22 C -0.182 4.182 23 C -0.124 4.124 24 H 0.071 0.929 25 H 0.073 0.927 26 H 0.083 0.917 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.084 0.916 30 H 0.100 0.900 31 H 0.073 0.927 32 H 0.057 0.943 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.063 0.937 36 H 0.051 0.949 37 H 0.000 1.000 38 H 0.005 0.995 39 H 0.068 0.932 40 H 0.109 0.891 41 H 0.112 0.888 42 H 0.254 0.746 43 H 0.174 0.826 44 H 0.068 0.932 45 H 0.080 0.920 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.165 8.786 2.988 15.300 hybrid contribution 1.796 0.081 -0.596 1.894 sum -10.369 8.867 2.392 13.851 Atomic orbital electron populations 1.21781 0.94746 1.01663 1.01956 1.21423 0.96197 0.95871 1.01499 1.21072 0.92873 0.96588 0.98176 1.21577 1.01887 0.95515 0.96278 1.21753 1.00866 0.96099 1.01647 1.22284 0.97078 0.96979 0.90859 1.62396 1.20301 1.39174 1.02292 1.19419 0.82860 0.93857 0.95694 1.21197 0.93443 1.32518 1.06608 0.92084 1.25575 0.96087 0.97222 0.99150 1.70082 1.01142 1.47695 1.38145 0.85806 0.76699 0.79610 0.80810 1.18945 1.21584 1.19844 1.20850 0.98470 0.82060 0.96916 1.23481 0.98300 0.91706 0.96850 1.84058 1.45865 1.22441 1.54966 1.24623 0.90233 0.93712 1.02622 1.21964 1.02805 0.96580 1.03876 1.20549 0.97271 0.96603 1.03791 1.20068 0.98635 0.97209 0.96480 0.92854 0.92690 0.91713 0.92594 0.93361 0.91576 0.90022 0.92709 0.94278 0.92684 0.91878 0.93741 0.94944 0.99990 0.99465 0.93176 0.89093 0.88770 0.74601 0.82626 0.93210 0.91959 0.92170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 9.77 71.98 0.70 -2.45 16 2 C -0.11 -3.18 5.34 30.59 0.16 -3.01 16 3 C -0.07 -1.96 1.81 -10.79 -0.02 -1.98 16 4 C -0.11 -2.71 5.29 30.59 0.16 -2.55 16 5 C -0.15 -3.36 9.77 71.98 0.70 -2.66 16 6 C 0.06 2.07 4.07 86.30 0.35 2.42 16 7 N -0.52 -21.90 3.96 -905.33 -3.58 -25.48 16 8 C 0.21 10.77 4.31 85.56 0.37 11.14 16 9 C -0.50 -26.71 6.66 25.60 0.17 -26.54 16 10 H 0.06 3.21 7.13 -2.91 -0.02 3.19 16 11 C 0.02 0.98 5.14 84.65 0.43 1.41 16 12 N -0.93 -54.57 13.29 21.45 0.28 -54.29 16 13 Si 0.94 43.22 29.54 68.60 2.03 45.25 16 14 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 15 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 16 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 17 C 0.15 5.56 5.40 85.56 0.46 6.02 16 18 C -0.05 -1.98 4.93 24.83 0.12 -1.86 16 19 O -0.18 -5.96 9.31 -2.49 -0.02 -5.98 16 20 C -0.04 -1.27 12.09 66.97 0.81 -0.46 16 21 C -0.23 -7.70 10.87 22.19 0.24 -7.46 16 22 C -0.18 -7.10 5.21 -19.94 -0.10 -7.21 16 23 C -0.07 -2.80 8.64 71.24 0.62 -2.18 16 24 H 0.05 1.13 8.14 -2.38 -0.02 1.11 16 25 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.06 1.22 6.32 -2.39 -0.02 1.20 16 27 H 0.06 1.87 7.54 -2.38 -0.02 1.85 16 28 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.07 1.92 6.60 -2.38 -0.02 1.90 16 30 H 0.08 1.62 6.26 -2.39 -0.01 1.60 16 31 H 0.05 1.33 8.14 -2.38 -0.02 1.31 16 32 H 0.04 1.05 6.39 -2.39 -0.02 1.04 16 33 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.04 1.77 7.83 -2.39 -0.02 1.75 16 36 H 0.03 1.25 3.98 -2.38 -0.01 1.24 16 37 H -0.02 -0.99 5.45 -2.38 -0.01 -1.01 16 38 H -0.01 -0.75 7.87 -2.39 -0.02 -0.77 16 39 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 40 H 0.09 3.03 6.62 -2.39 -0.02 3.01 16 41 H 0.09 3.84 5.48 -2.39 -0.01 3.83 16 42 H 0.24 4.26 8.06 -2.91 -0.02 4.24 16 43 H 0.16 4.42 8.06 -2.91 -0.02 4.40 16 44 H 0.05 2.46 7.16 -2.39 -0.02 2.44 16 45 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 46 H 0.06 2.57 6.29 -2.38 -0.02 2.55 16 Total: -1.00 -61.84 349.04 4.84 -57.00 By element: Atomic # 1 Polarization: 19.93 SS G_CDS: 0.95 Total: 20.88 kcal Atomic # 6 Polarization: -42.56 SS G_CDS: 5.18 Total: -37.38 kcal Atomic # 7 Polarization: -76.47 SS G_CDS: -3.30 Total: -79.77 kcal Atomic # 8 Polarization: -5.96 SS G_CDS: -0.02 Total: -5.98 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -61.84 4.84 -57.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093101030.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.900 kcal (2) G-P(sol) polarization free energy of solvation -61.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds