Wall clock time and date at job start Tue Mar 31 2020 00:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50705 * 109.46536 * 2 1 4 4 C 1.34513 * 125.78742 * 90.00192 * 3 2 1 5 5 C 1.41376 * 106.83997 * 179.97438 * 4 3 2 6 6 C 1.34518 * 106.84281 * 0.22936 * 5 4 3 7 7 C 1.50698 * 125.79151 * 179.77366 * 6 5 4 8 8 N 1.46897 * 109.47271 * 82.99820 * 7 6 5 9 9 C 1.46906 * 110.99980 * 153.38600 * 8 7 6 10 10 C 1.50698 * 109.46842 * 199.33024 * 9 8 7 11 11 H 1.07995 * 120.00106 * 359.97438 * 10 9 8 12 12 C 1.37884 * 119.99414 * 179.97438 * 10 9 8 13 13 N 1.31508 * 120.00218 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 119.99668 * 179.97438 * 12 10 9 15 15 H 1.48508 * 109.47111 * 60.00266 * 14 12 10 16 16 H 1.48498 * 109.47019 * 179.97438 * 14 12 10 17 17 H 1.48494 * 109.47542 * 300.00443 * 14 12 10 18 18 C 1.46901 * 111.00203 * 277.33807 * 8 7 6 19 19 C 1.52999 * 109.46959 * 316.97229 * 18 8 7 20 20 C 1.52997 * 109.47443 * 82.03888 * 19 18 8 21 21 C 1.53007 * 109.46976 * 202.03817 * 19 18 8 22 22 C 1.53001 * 109.47092 * 322.03473 * 19 18 8 23 23 O 1.34298 * 125.79140 * 269.97216 * 3 2 1 24 24 H 1.09006 * 109.46721 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47448 * 299.99558 * 1 2 3 26 26 H 1.08993 * 109.46872 * 60.00184 * 1 2 3 27 27 H 1.08993 * 109.46968 * 240.00249 * 2 1 3 28 28 H 1.08993 * 109.46872 * 119.99816 * 2 1 3 29 29 H 1.08000 * 126.58060 * 359.94723 * 4 3 2 30 30 H 1.08006 * 126.58427 * 179.97438 * 5 4 3 31 31 H 1.09000 * 109.46836 * 203.00138 * 7 6 5 32 32 H 1.09005 * 109.46700 * 322.99750 * 7 6 5 33 33 H 1.08997 * 109.46826 * 319.33088 * 9 8 7 34 34 H 1.08999 * 109.46923 * 79.32844 * 9 8 7 35 35 H 0.97005 * 120.00345 * 180.02562 * 13 12 10 36 36 H 1.09004 * 109.46797 * 76.96779 * 18 8 7 37 37 H 1.08998 * 109.47045 * 196.96980 * 18 8 7 38 38 H 1.09009 * 109.46928 * 68.40848 * 20 19 18 39 39 H 1.08995 * 109.47287 * 188.40710 * 20 19 18 40 40 H 1.08994 * 109.47189 * 308.41039 * 20 19 18 41 41 H 1.08999 * 109.47190 * 59.99872 * 21 19 18 42 42 H 1.09000 * 109.46965 * 179.97438 * 21 19 18 43 43 H 1.09000 * 109.46979 * 299.99895 * 21 19 18 44 44 H 1.08996 * 109.46938 * 41.24183 * 22 19 18 45 45 H 1.09003 * 109.46910 * 161.23944 * 22 19 18 46 46 H 1.08992 * 109.47337 * 281.23690 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2944 2.1625 1.0912 5 6 2.7406 3.4231 0.6321 6 6 2.7195 3.3781 -0.7122 7 6 3.1100 4.5014 -1.6378 8 7 4.5688 4.5090 -1.8104 9 6 4.9430 5.1012 -3.1017 10 6 6.3444 4.6790 -3.4606 11 1 6.9015 4.0355 -2.7958 12 6 6.9153 5.1144 -4.6377 13 7 6.2371 5.8984 -5.4469 14 14 8.6527 4.5916 -5.0824 15 1 8.7145 3.1110 -5.1797 16 1 9.0305 5.1892 -6.3882 17 1 9.5940 5.0584 -4.0330 18 6 5.2268 5.2096 -0.6995 19 6 4.4516 6.4873 -0.3718 20 6 3.2603 6.1454 0.5252 21 6 5.3720 7.4699 0.3552 22 6 3.9476 7.1247 -1.6682 23 8 2.2945 2.1613 -1.0894 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.1847 1.8544 2.1204 30 1 3.0371 4.2627 1.2434 31 1 2.6302 4.3578 -2.6059 32 1 2.7897 5.4519 -1.2109 33 1 4.2519 4.7593 -3.8721 34 1 4.8981 6.1879 -3.0296 35 1 6.6386 6.2044 -6.2753 36 1 5.2472 4.5621 0.1772 37 1 6.2468 5.4665 -0.9853 38 1 3.6214 5.8313 1.5046 39 1 2.6254 7.0242 0.6367 40 1 2.6857 5.3369 0.0734 41 1 6.2207 7.7136 -0.2838 42 1 4.8199 8.3804 0.5882 43 1 5.7311 7.0159 1.2788 44 1 3.5806 6.3462 -2.3370 45 1 3.1390 7.8194 -1.4411 46 1 4.7640 7.6625 -2.1501 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093101184.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:23 Heat of formation + Delta-G solvation = 72.758794 kcal Electronic energy + Delta-G solvation = -23260.874372 eV Core-core repulsion = 20154.932704 eV Total energy + Delta-G solvation = -3105.941668 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.31506 -39.64379 -34.23450 -33.90394 -32.91253 -32.20596 -30.01222 -27.70449 -27.02034 -26.69033 -25.83554 -23.93189 -22.62167 -21.35204 -20.50222 -19.64250 -18.52049 -16.63682 -16.05746 -15.91676 -15.38472 -14.82670 -14.67588 -14.31809 -14.15475 -14.00967 -13.28049 -13.20217 -12.99365 -12.63029 -12.42252 -12.29896 -11.86925 -11.85848 -11.55245 -11.42833 -11.27527 -11.13324 -11.09372 -10.89695 -10.83435 -10.73991 -10.49342 -10.26997 -10.04683 -9.76388 -9.66432 -9.45175 -9.17978 -8.37562 -7.90147 -7.07696 -5.98491 -3.98331 2.10462 2.96568 3.28386 3.35689 3.39565 3.43396 4.46041 4.79771 4.96416 5.03163 5.14909 5.18737 5.20711 5.29452 5.35838 5.42927 5.46344 5.49547 5.62851 5.71563 5.77095 5.84893 5.89066 5.93797 6.01797 6.05188 6.05642 6.14113 6.20573 6.27657 6.33529 6.34978 6.40050 6.55447 6.58890 6.69468 6.81711 6.85644 6.93164 7.23786 7.39275 7.61913 7.84789 8.11090 8.22084 8.56534 9.07851 9.64275 11.11234 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.015459 B = 0.005383 C = 0.004373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.770642 B = 5200.176578 C = 6400.770654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.041 4.041 3 C -0.028 4.028 4 C -0.210 4.210 5 C -0.239 4.239 6 C 0.027 3.973 7 C 0.079 3.921 8 N -0.525 5.525 9 C 0.164 3.836 10 C -0.501 4.501 11 H 0.060 0.940 12 C 0.055 3.945 13 N -0.900 5.900 14 Si 0.895 3.105 15 H -0.277 1.277 16 H -0.289 1.289 17 H -0.278 1.278 18 C 0.070 3.930 19 C -0.102 4.102 20 C -0.187 4.187 21 C -0.134 4.134 22 C -0.167 4.167 23 O -0.169 6.169 24 H 0.061 0.939 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.079 0.921 28 H 0.088 0.912 29 H 0.139 0.861 30 H 0.161 0.839 31 H 0.078 0.922 32 H 0.112 0.888 33 H 0.025 0.975 34 H 0.035 0.965 35 H 0.261 0.739 36 H 0.058 0.942 37 H 0.084 0.916 38 H 0.055 0.945 39 H 0.048 0.952 40 H 0.101 0.899 41 H 0.058 0.942 42 H 0.047 0.953 43 H 0.049 0.951 44 H 0.087 0.913 45 H 0.040 0.960 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.681 -3.518 12.862 16.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.078 4.078 3 C -0.078 4.078 4 C -0.229 4.229 5 C -0.258 4.258 6 C -0.025 4.025 7 C -0.048 4.048 8 N -0.248 5.248 9 C 0.040 3.960 10 C -0.540 4.540 11 H 0.079 0.921 12 C -0.145 4.145 13 N -0.540 5.540 14 Si 0.723 3.277 15 H -0.203 1.203 16 H -0.214 1.214 17 H -0.203 1.203 18 C -0.059 4.059 19 C -0.103 4.103 20 C -0.243 4.243 21 C -0.192 4.192 22 C -0.224 4.224 23 O -0.065 6.065 24 H 0.080 0.920 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.097 0.903 28 H 0.106 0.894 29 H 0.156 0.844 30 H 0.179 0.821 31 H 0.096 0.904 32 H 0.129 0.871 33 H 0.043 0.957 34 H 0.052 0.948 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.102 0.898 38 H 0.073 0.927 39 H 0.067 0.933 40 H 0.119 0.881 41 H 0.077 0.923 42 H 0.066 0.934 43 H 0.068 0.932 44 H 0.105 0.895 45 H 0.059 0.941 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -9.525 -4.018 12.349 16.105 hybrid contribution 0.852 0.595 -0.100 1.044 sum -8.673 -3.423 12.249 15.394 Atomic orbital electron populations 1.21783 0.94397 1.01858 1.02540 1.19996 0.95974 0.88128 1.03710 1.22276 1.05821 0.95084 0.84656 1.21491 1.07738 0.95002 0.98719 1.22234 1.09191 0.99865 0.94486 1.22744 1.00091 0.85059 0.94559 1.21688 0.92558 0.92748 0.97814 1.62113 1.02901 1.55148 1.04642 1.20532 0.96680 0.95451 0.83329 1.21139 0.98790 1.29354 1.04723 0.92148 1.24933 0.97889 0.95367 0.96333 1.69930 1.37335 1.34881 1.11903 0.86604 0.84723 0.78898 0.77434 1.20302 1.21440 1.20346 1.22226 0.98812 0.90865 0.93958 1.21189 0.96059 0.97474 0.95625 1.23296 0.98639 1.02944 0.99420 1.21821 0.99252 0.98220 0.99876 1.22782 1.00952 1.01350 0.97305 1.83992 1.65114 1.22543 1.34817 0.92013 0.92369 0.92305 0.90286 0.89379 0.84354 0.82135 0.90400 0.87111 0.95676 0.94753 0.92976 0.92365 0.89807 0.92665 0.93260 0.88136 0.92332 0.93433 0.93157 0.89466 0.94085 0.91526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.89 37.16 0.37 -1.01 16 2 C -0.04 -0.45 6.47 -27.88 -0.18 -0.63 16 3 C -0.03 -0.42 6.57 -35.62 -0.23 -0.66 16 4 C -0.21 -3.05 10.81 -39.71 -0.43 -3.48 16 5 C -0.24 -3.75 8.73 -39.70 -0.35 -4.10 16 6 C 0.03 0.48 6.53 -35.62 -0.23 0.24 16 7 C 0.08 1.45 3.93 -4.98 -0.02 1.43 16 8 N -0.52 -11.17 4.51 -237.51 -1.07 -12.24 16 9 C 0.16 4.09 3.73 -4.97 -0.02 4.07 16 10 C -0.50 -13.96 8.49 -34.44 -0.29 -14.26 16 11 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 12 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 13 N -0.90 -26.29 13.29 55.43 0.74 -25.56 16 14 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 16 15 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 16 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 18 C 0.07 1.32 4.79 -3.82 -0.02 1.30 16 19 C -0.10 -1.61 0.77 -154.51 -0.12 -1.73 16 20 C -0.19 -2.54 6.08 37.16 0.23 -2.32 16 21 C -0.13 -1.91 8.27 37.16 0.31 -1.60 16 22 C -0.17 -2.88 6.28 37.16 0.23 -2.65 16 23 O -0.17 -3.09 10.65 5.73 0.06 -3.03 16 24 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.14 1.64 8.06 -52.49 -0.42 1.21 16 30 H 0.16 2.28 4.30 -52.48 -0.23 2.05 16 31 H 0.08 1.48 7.47 -51.93 -0.39 1.10 16 32 H 0.11 1.82 2.39 -51.93 -0.12 1.70 16 33 H 0.03 0.69 7.54 -51.93 -0.39 0.29 16 34 H 0.04 0.87 4.00 -51.93 -0.21 0.66 16 35 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 36 H 0.06 1.05 7.49 -51.93 -0.39 0.66 16 37 H 0.08 1.76 7.07 -51.93 -0.37 1.39 16 38 H 0.05 0.69 7.00 -51.92 -0.36 0.33 16 39 H 0.05 0.61 7.96 -51.93 -0.41 0.19 16 40 H 0.10 1.44 1.97 -51.93 -0.10 1.34 16 41 H 0.06 0.89 8.11 -51.93 -0.42 0.47 16 42 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.09 1.65 2.96 -51.93 -0.15 1.50 16 45 H 0.04 0.61 7.88 -51.93 -0.41 0.20 16 46 H 0.07 1.27 7.21 -51.93 -0.37 0.90 16 LS Contribution 340.63 15.07 5.13 5.13 Total: -1.00 -29.95 340.63 -8.27 -38.22 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -7.26 Total: 4.62 kcal Atomic # 6 Polarization: -23.05 SS G_CDS: -0.85 Total: -23.90 kcal Atomic # 7 Polarization: -37.46 SS G_CDS: -0.33 Total: -37.80 kcal Atomic # 8 Polarization: -3.09 SS G_CDS: 0.06 Total: -3.03 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.95 -8.27 -38.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093101184.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.982 kcal (2) G-P(sol) polarization free energy of solvation -29.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds