Wall clock time and date at job start Tue Mar 31 2020 00:54:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50705 * 109.46536 * 2 1 4 4 C 1.34513 * 125.78742 * 90.00192 * 3 2 1 5 5 C 1.41376 * 106.83997 * 179.97438 * 4 3 2 6 6 C 1.34518 * 106.84281 * 0.22936 * 5 4 3 7 7 C 1.50698 * 125.79151 * 179.77366 * 6 5 4 8 8 N 1.46897 * 109.47271 * 82.99820 * 7 6 5 9 9 C 1.46906 * 110.99980 * 153.38600 * 8 7 6 10 10 C 1.50698 * 109.46842 * 199.33024 * 9 8 7 11 11 H 1.07995 * 120.00106 * 359.97438 * 10 9 8 12 12 C 1.37884 * 119.99414 * 179.97438 * 10 9 8 13 13 N 1.31508 * 120.00218 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 119.99668 * 179.97438 * 12 10 9 15 15 H 1.48508 * 109.47111 * 60.00266 * 14 12 10 16 16 H 1.48498 * 109.47019 * 179.97438 * 14 12 10 17 17 H 1.48494 * 109.47542 * 300.00443 * 14 12 10 18 18 C 1.46901 * 111.00203 * 277.33807 * 8 7 6 19 19 C 1.52999 * 109.46959 * 316.97229 * 18 8 7 20 20 C 1.52997 * 109.47443 * 82.03888 * 19 18 8 21 21 C 1.53007 * 109.46976 * 202.03817 * 19 18 8 22 22 C 1.53001 * 109.47092 * 322.03473 * 19 18 8 23 23 O 1.34298 * 125.79140 * 269.97216 * 3 2 1 24 24 H 1.09006 * 109.46721 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47448 * 299.99558 * 1 2 3 26 26 H 1.08993 * 109.46872 * 60.00184 * 1 2 3 27 27 H 1.08993 * 109.46968 * 240.00249 * 2 1 3 28 28 H 1.08993 * 109.46872 * 119.99816 * 2 1 3 29 29 H 1.08000 * 126.58060 * 359.94723 * 4 3 2 30 30 H 1.08006 * 126.58427 * 179.97438 * 5 4 3 31 31 H 1.09000 * 109.46836 * 203.00138 * 7 6 5 32 32 H 1.09005 * 109.46700 * 322.99750 * 7 6 5 33 33 H 1.08997 * 109.46826 * 319.33088 * 9 8 7 34 34 H 1.08999 * 109.46923 * 79.32844 * 9 8 7 35 35 H 0.97005 * 120.00345 * 180.02562 * 13 12 10 36 36 H 1.09004 * 109.46797 * 76.96779 * 18 8 7 37 37 H 1.08998 * 109.47045 * 196.96980 * 18 8 7 38 38 H 1.09009 * 109.46928 * 68.40848 * 20 19 18 39 39 H 1.08995 * 109.47287 * 188.40710 * 20 19 18 40 40 H 1.08994 * 109.47189 * 308.41039 * 20 19 18 41 41 H 1.08999 * 109.47190 * 59.99872 * 21 19 18 42 42 H 1.09000 * 109.46965 * 179.97438 * 21 19 18 43 43 H 1.09000 * 109.46979 * 299.99895 * 21 19 18 44 44 H 1.08996 * 109.46938 * 41.24183 * 22 19 18 45 45 H 1.09003 * 109.46910 * 161.23944 * 22 19 18 46 46 H 1.08992 * 109.47337 * 281.23690 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2944 2.1625 1.0912 5 6 2.7406 3.4231 0.6321 6 6 2.7195 3.3781 -0.7122 7 6 3.1100 4.5014 -1.6378 8 7 4.5688 4.5090 -1.8104 9 6 4.9430 5.1012 -3.1017 10 6 6.3444 4.6790 -3.4606 11 1 6.9015 4.0355 -2.7958 12 6 6.9153 5.1144 -4.6377 13 7 6.2371 5.8984 -5.4469 14 14 8.6527 4.5916 -5.0824 15 1 8.7145 3.1110 -5.1797 16 1 9.0305 5.1892 -6.3882 17 1 9.5940 5.0584 -4.0330 18 6 5.2268 5.2096 -0.6995 19 6 4.4516 6.4873 -0.3718 20 6 3.2603 6.1454 0.5252 21 6 5.3720 7.4699 0.3552 22 6 3.9476 7.1247 -1.6682 23 8 2.2945 2.1613 -1.0894 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.1847 1.8544 2.1204 30 1 3.0371 4.2627 1.2434 31 1 2.6302 4.3578 -2.6059 32 1 2.7897 5.4519 -1.2109 33 1 4.2519 4.7593 -3.8721 34 1 4.8981 6.1879 -3.0296 35 1 6.6386 6.2044 -6.2753 36 1 5.2472 4.5621 0.1772 37 1 6.2468 5.4665 -0.9853 38 1 3.6214 5.8313 1.5046 39 1 2.6254 7.0242 0.6367 40 1 2.6857 5.3369 0.0734 41 1 6.2207 7.7136 -0.2838 42 1 4.8199 8.3804 0.5882 43 1 5.7311 7.0159 1.2788 44 1 3.5806 6.3462 -2.3370 45 1 3.1390 7.8194 -1.4411 46 1 4.7640 7.6625 -2.1501 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093101184.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:22 Heat of formation + Delta-G solvation = 55.522278 kcal Electronic energy + Delta-G solvation = -23261.621803 eV Core-core repulsion = 20154.932704 eV Total energy + Delta-G solvation = -3106.689099 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.56555 -41.10184 -35.67800 -35.10927 -34.42149 -33.84953 -31.35029 -29.29557 -28.49577 -28.06151 -27.08456 -25.51296 -23.83254 -22.71055 -22.05037 -20.88065 -19.85348 -18.57587 -17.39299 -17.28899 -16.86751 -16.56383 -16.10505 -15.75592 -15.31940 -15.19089 -14.66633 -14.57843 -14.36372 -13.98501 -13.68852 -13.38957 -13.21699 -13.06216 -12.97311 -12.90160 -12.70736 -12.56825 -12.43108 -12.37276 -12.28256 -12.12997 -11.94982 -11.80683 -11.59205 -11.44495 -11.12517 -11.08650 -10.65296 -10.51858 -9.13572 -8.74561 -8.14351 -6.23534 0.86618 1.39089 1.41666 1.49436 1.77908 2.11669 2.41595 3.15331 3.45262 3.78056 3.86134 3.93088 4.05032 4.08800 4.17499 4.25653 4.36892 4.40682 4.41646 4.58362 4.65403 4.68367 4.72526 4.85575 4.87194 4.93122 4.96485 4.99659 5.03458 5.11378 5.12359 5.18279 5.23103 5.27455 5.30535 5.33236 5.40080 5.43831 5.48575 5.54476 5.70251 5.79376 6.13122 6.35828 6.47684 6.64258 6.90300 7.43534 8.93092 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.015459 B = 0.005383 C = 0.004373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.770642 B = 5200.176578 C = 6400.770654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.043 4.043 3 C -0.034 4.034 4 C -0.216 4.216 5 C -0.223 4.223 6 C -0.011 4.011 7 C 0.086 3.914 8 N -0.541 5.541 9 C 0.180 3.820 10 C -0.519 4.519 11 H 0.050 0.950 12 C 0.006 3.994 13 N -0.931 5.931 14 Si 0.960 3.040 15 H -0.275 1.275 16 H -0.281 1.281 17 H -0.268 1.268 18 C 0.074 3.926 19 C -0.097 4.097 20 C -0.182 4.182 21 C -0.130 4.130 22 C -0.165 4.165 23 O -0.201 6.201 24 H 0.085 0.915 25 H 0.064 0.936 26 H 0.041 0.959 27 H 0.074 0.926 28 H 0.115 0.885 29 H 0.171 0.829 30 H 0.179 0.821 31 H 0.054 0.946 32 H 0.134 0.866 33 H -0.011 1.011 34 H 0.033 0.967 35 H 0.263 0.737 36 H 0.069 0.931 37 H 0.054 0.946 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.091 0.909 41 H 0.038 0.962 42 H 0.066 0.934 43 H 0.067 0.933 44 H 0.064 0.936 45 H 0.068 0.932 46 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.032 -4.004 15.632 19.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.080 4.080 3 C -0.084 4.084 4 C -0.235 4.235 5 C -0.242 4.242 6 C -0.061 4.061 7 C -0.041 4.041 8 N -0.264 5.264 9 C 0.055 3.945 10 C -0.558 4.558 11 H 0.069 0.931 12 C -0.192 4.192 13 N -0.572 5.572 14 Si 0.785 3.215 15 H -0.201 1.201 16 H -0.207 1.207 17 H -0.193 1.193 18 C -0.055 4.055 19 C -0.098 4.098 20 C -0.238 4.238 21 C -0.188 4.188 22 C -0.222 4.222 23 O -0.098 6.098 24 H 0.104 0.896 25 H 0.083 0.917 26 H 0.061 0.939 27 H 0.093 0.907 28 H 0.133 0.867 29 H 0.188 0.812 30 H 0.196 0.804 31 H 0.073 0.927 32 H 0.151 0.849 33 H 0.008 0.992 34 H 0.050 0.950 35 H 0.072 0.928 36 H 0.088 0.912 37 H 0.073 0.927 38 H 0.094 0.906 39 H 0.088 0.912 40 H 0.109 0.891 41 H 0.058 0.942 42 H 0.085 0.915 43 H 0.086 0.914 44 H 0.083 0.917 45 H 0.086 0.914 46 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -9.882 -4.504 15.141 18.633 hybrid contribution 0.901 0.685 -0.928 1.464 sum -8.981 -3.819 14.212 17.241 Atomic orbital electron populations 1.21758 0.93020 1.03286 1.02035 1.20239 0.97097 0.85861 1.04794 1.23173 1.04707 0.96371 0.84101 1.21885 1.07258 0.94251 1.00075 1.22514 1.07317 1.00843 0.93554 1.22606 1.03024 0.85211 0.95251 1.21648 0.90428 0.94637 0.97350 1.61982 1.05180 1.55544 1.03703 1.20201 0.94559 0.95192 0.84560 1.21451 1.00145 1.29257 1.04937 0.93126 1.25744 1.01922 0.95308 0.96183 1.70046 1.39036 1.35812 1.12272 0.85583 0.79973 0.78425 0.77502 1.20094 1.20664 1.19300 1.22178 0.97553 0.92562 0.93174 1.21119 0.97084 0.96086 0.95536 1.23192 0.97519 1.03594 0.99485 1.21780 0.98426 0.98664 0.99890 1.22679 1.00804 1.01042 0.97634 1.83965 1.65913 1.23185 1.36756 0.89627 0.91735 0.93940 0.90718 0.86727 0.81172 0.80366 0.92711 0.84910 0.99243 0.94995 0.92824 0.91218 0.92717 0.90647 0.91172 0.89062 0.94242 0.91451 0.91415 0.91738 0.91364 0.94189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 9.89 71.98 0.71 -1.65 16 2 C -0.04 -0.85 6.47 29.85 0.19 -0.66 16 3 C -0.03 -0.97 6.57 24.83 0.16 -0.81 16 4 C -0.22 -5.70 10.81 22.19 0.24 -5.46 16 5 C -0.22 -6.59 8.73 22.19 0.19 -6.39 16 6 C -0.01 -0.38 6.53 24.83 0.16 -0.22 16 7 C 0.09 3.27 3.93 85.56 0.34 3.61 16 8 N -0.54 -23.97 4.51 -905.36 -4.08 -28.05 16 9 C 0.18 9.53 3.73 85.56 0.32 9.85 16 10 C -0.52 -30.16 8.49 25.60 0.22 -29.94 16 11 H 0.05 2.96 7.81 -2.91 -0.02 2.94 16 12 C 0.01 0.36 5.46 84.66 0.46 0.83 16 13 N -0.93 -56.11 13.29 21.45 0.28 -55.83 16 14 Si 0.96 45.45 29.54 68.60 2.03 47.48 16 15 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 16 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 17 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 18 C 0.07 2.80 4.79 86.30 0.41 3.21 16 19 C -0.10 -2.95 0.77 -52.18 -0.04 -2.99 16 20 C -0.18 -4.40 6.08 71.98 0.44 -3.96 16 21 C -0.13 -3.45 8.27 71.98 0.60 -2.86 16 22 C -0.16 -5.73 6.28 71.98 0.45 -5.28 16 23 O -0.20 -7.46 10.65 -2.42 -0.03 -7.49 16 24 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 25 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.17 3.31 8.06 -2.91 -0.02 3.28 16 30 H 0.18 4.47 4.30 -2.91 -0.01 4.46 16 31 H 0.05 2.27 7.47 -2.39 -0.02 2.25 16 32 H 0.13 4.38 2.39 -2.38 -0.01 4.37 16 33 H -0.01 -0.62 7.54 -2.39 -0.02 -0.64 16 34 H 0.03 1.72 4.00 -2.39 -0.01 1.71 16 35 H 0.26 15.00 8.31 -92.70 -0.77 14.23 16 36 H 0.07 2.46 7.49 -2.38 -0.02 2.44 16 37 H 0.05 2.37 7.07 -2.39 -0.02 2.35 16 38 H 0.07 1.56 7.00 -2.38 -0.02 1.54 16 39 H 0.07 1.45 7.96 -2.39 -0.02 1.43 16 40 H 0.09 2.43 1.97 -2.39 0.00 2.43 16 41 H 0.04 1.18 8.11 -2.39 -0.02 1.16 16 42 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 44 H 0.06 2.55 2.96 -2.39 -0.01 2.54 16 45 H 0.07 1.95 7.88 -2.39 -0.02 1.94 16 46 H 0.04 1.57 7.21 -2.39 -0.02 1.56 16 Total: -1.00 -67.50 340.63 4.03 -63.48 By element: Atomic # 1 Polarization: 22.16 SS G_CDS: 0.97 Total: 23.13 kcal Atomic # 6 Polarization: -47.58 SS G_CDS: 4.86 Total: -42.72 kcal Atomic # 7 Polarization: -80.08 SS G_CDS: -3.80 Total: -83.87 kcal Atomic # 8 Polarization: -7.46 SS G_CDS: -0.03 Total: -7.49 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -67.50 4.03 -63.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093101184.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.998 kcal (2) G-P(sol) polarization free energy of solvation -67.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds