Wall clock time and date at job start Tue Mar 31 2020 01:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47141 * 2 1 4 4 C 1.52997 * 109.46779 * 120.00041 * 2 1 3 5 5 C 1.53001 * 109.47463 * 64.99540 * 4 2 1 6 6 N 1.46501 * 109.47059 * 179.97438 * 5 4 2 7 7 C 1.46492 * 120.00528 * 270.00540 * 6 5 4 8 8 C 1.50701 * 109.47304 * 269.99989 * 7 6 5 9 9 H 1.08006 * 119.99691 * 0.02562 * 8 7 6 10 10 C 1.37871 * 120.00426 * 179.97438 * 8 7 6 11 11 N 1.31517 * 119.99922 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 120.00424 * 180.02562 * 10 8 7 13 13 H 1.48506 * 109.46855 * 359.97438 * 12 10 8 14 14 H 1.48499 * 109.47701 * 119.99698 * 12 10 8 15 15 H 1.48502 * 109.47333 * 240.00110 * 12 10 8 16 16 C 1.34777 * 119.99395 * 90.00633 * 6 5 4 17 17 O 1.21276 * 120.00337 * 359.97438 * 16 6 5 18 18 C 1.50707 * 119.99733 * 179.97438 * 16 6 5 19 19 C 1.53005 * 109.46975 * 179.97438 * 18 16 6 20 20 H 1.08997 * 110.34410 * 307.28962 * 19 18 16 21 21 C 1.51102 * 110.38599 * 69.69726 * 19 18 16 22 22 C 1.30527 * 111.10270 * 135.24890 * 21 19 18 23 23 C 1.51198 * 111.11340 * 0.02562 * 22 21 19 24 24 C 1.54631 * 110.38528 * 184.99904 * 19 18 16 25 25 H 1.09005 * 109.46776 * 60.00284 * 1 2 3 26 26 H 1.09004 * 109.47324 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47050 * 300.00480 * 1 2 3 28 28 H 1.08995 * 109.47050 * 239.99520 * 2 1 3 29 29 H 1.08997 * 109.47347 * 180.02562 * 3 2 1 30 30 H 1.09005 * 109.47054 * 299.99546 * 3 2 1 31 31 H 1.08995 * 109.47540 * 59.99820 * 3 2 1 32 32 H 1.09003 * 109.47100 * 304.99462 * 4 2 1 33 33 H 1.09005 * 109.47054 * 185.00148 * 4 2 1 34 34 H 1.09005 * 109.46865 * 60.00630 * 5 4 2 35 35 H 1.08991 * 109.47622 * 300.00144 * 5 4 2 36 36 H 1.08998 * 109.47362 * 30.00208 * 7 6 5 37 37 H 1.08998 * 109.47363 * 150.00442 * 7 6 5 38 38 H 0.96997 * 120.00064 * 179.97438 * 11 10 8 39 39 H 1.08994 * 109.47193 * 59.99867 * 18 16 6 40 40 H 1.08996 * 109.46772 * 299.99728 * 18 16 6 41 41 H 1.07997 * 124.44801 * 315.26503 * 21 19 18 42 42 H 1.08003 * 124.44329 * 180.02562 * 22 21 19 43 43 H 1.09000 * 110.42455 * 224.75891 * 23 22 21 44 44 H 1.09008 * 110.40054 * 102.35058 * 23 22 21 45 45 H 1.09002 * 111.03841 * 334.58822 * 24 19 18 46 46 H 1.09002 * 111.03772 * 98.48327 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 1.6351 -2.1955 1.1881 6 7 2.1239 -2.8861 2.3840 7 6 3.4521 -3.5041 2.3816 8 6 3.3413 -4.9313 1.9104 9 1 2.3778 -5.3372 1.6394 10 6 4.4699 -5.7185 1.8243 11 7 5.6434 -5.2237 2.1529 12 14 4.3327 -7.4873 1.2396 13 1 2.9134 -7.7986 0.9332 14 1 5.1551 -7.6697 0.0166 15 1 4.8203 -8.4000 2.3047 16 6 1.3515 -2.9530 3.4865 17 8 0.2521 -2.4410 3.4886 18 6 1.8540 -3.6640 4.7166 19 6 0.7921 -3.5937 5.8158 20 1 0.4828 -2.5613 5.9785 21 6 -0.3980 -4.4514 5.4536 22 6 -0.7925 -5.1631 6.4742 23 6 0.0688 -4.8982 7.6883 24 6 1.3337 -4.2070 7.1280 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8901 31 1 1.6767 1.9563 0.8899 32 1 1.6053 -0.2617 2.1370 33 1 3.1263 -0.6443 1.2952 34 1 2.0698 -2.6551 0.3004 35 1 0.5488 -2.2724 1.1421 36 1 4.1094 -2.9502 1.7114 37 1 3.8632 -3.4857 3.3909 38 1 6.4373 -5.7776 2.0927 39 1 2.7691 -3.1849 5.0648 40 1 2.0591 -4.7069 4.4751 41 1 -0.8612 -4.4730 4.4782 42 1 -1.6249 -5.8510 6.4540 43 1 0.3342 -5.8351 8.1781 44 1 -0.4486 -4.2380 8.3845 45 1 2.1199 -4.9341 6.9248 46 1 1.6877 -3.4303 7.8059 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103440590.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:45:38 Heat of formation + Delta-G solvation = -64.500529 kcal Electronic energy + Delta-G solvation = -22547.878984 eV Core-core repulsion = 19435.985306 eV Total energy + Delta-G solvation = -3111.893678 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.05292 -39.29182 -37.73058 -36.35986 -34.47854 -32.61778 -30.54943 -29.74969 -28.79489 -28.02075 -26.45245 -24.98461 -23.88459 -21.34550 -20.90372 -20.14917 -19.32739 -18.62015 -17.83164 -17.14341 -16.80847 -16.33713 -16.27371 -15.96189 -15.49198 -14.88650 -14.55011 -14.45501 -14.22654 -13.86762 -13.54551 -13.44314 -13.10935 -12.91693 -12.80649 -12.73912 -12.72918 -12.66532 -12.53787 -12.27349 -12.08537 -12.01901 -11.99195 -11.87690 -11.64442 -11.56144 -11.54119 -11.42125 -10.70005 -10.47713 -9.75116 -9.40681 -8.21216 -6.35834 1.38470 1.41832 1.42944 1.52111 1.82812 2.32544 2.46506 3.08568 3.65236 3.77975 3.87693 3.95902 4.01673 4.07164 4.11685 4.33421 4.39525 4.54219 4.58512 4.66398 4.68683 4.71564 4.75434 4.77643 4.81634 4.91313 4.95719 4.99129 5.01536 5.06476 5.11705 5.14073 5.14761 5.21112 5.31526 5.32211 5.45590 5.46297 5.49490 5.65747 5.69881 5.89017 6.03741 6.05789 6.59240 6.82649 7.31988 7.44906 8.84297 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.008735 B = 0.007084 C = 0.004339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3204.800070 B = 3951.544685 C = 6451.114348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.092 4.092 3 C -0.141 4.141 4 C -0.115 4.115 5 C 0.117 3.883 6 N -0.603 5.603 7 C 0.254 3.746 8 C -0.545 4.545 9 H 0.048 0.952 10 C 0.024 3.976 11 N -0.918 5.918 12 Si 0.954 3.046 13 H -0.274 1.274 14 H -0.277 1.277 15 H -0.275 1.275 16 C 0.511 3.489 17 O -0.589 6.589 18 C -0.120 4.120 19 C -0.050 4.050 20 H 0.075 0.925 21 C -0.165 4.165 22 C -0.173 4.173 23 C -0.093 4.093 24 C -0.120 4.120 25 H 0.070 0.930 26 H 0.045 0.955 27 H 0.047 0.953 28 H 0.073 0.927 29 H 0.054 0.946 30 H 0.070 0.930 31 H 0.051 0.949 32 H 0.049 0.951 33 H 0.055 0.945 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.019 0.981 37 H 0.031 0.969 38 H 0.268 0.732 39 H 0.093 0.907 40 H 0.086 0.914 41 H 0.097 0.903 42 H 0.135 0.865 43 H 0.084 0.916 44 H 0.087 0.913 45 H 0.071 0.929 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.208 5.697 4.110 10.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.111 4.111 3 C -0.198 4.198 4 C -0.154 4.154 5 C -0.006 4.006 6 N -0.332 5.332 7 C 0.133 3.867 8 C -0.584 4.584 9 H 0.066 0.934 10 C -0.177 4.177 11 N -0.557 5.557 12 Si 0.779 3.221 13 H -0.199 1.199 14 H -0.203 1.203 15 H -0.200 1.200 16 C 0.300 3.700 17 O -0.471 6.471 18 C -0.159 4.159 19 C -0.068 4.068 20 H 0.093 0.907 21 C -0.183 4.183 22 C -0.191 4.191 23 C -0.130 4.130 24 C -0.157 4.157 25 H 0.089 0.911 26 H 0.064 0.936 27 H 0.066 0.934 28 H 0.092 0.908 29 H 0.073 0.927 30 H 0.089 0.911 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.037 0.963 37 H 0.049 0.951 38 H 0.077 0.923 39 H 0.111 0.889 40 H 0.104 0.896 41 H 0.115 0.885 42 H 0.153 0.847 43 H 0.102 0.898 44 H 0.106 0.894 45 H 0.089 0.911 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -7.547 5.917 4.110 10.434 hybrid contribution 0.293 -1.027 -0.713 1.285 sum -7.254 4.890 3.396 9.384 Atomic orbital electron populations 1.21835 0.94861 1.01422 1.01906 1.21055 0.96224 0.96831 0.96965 1.21785 1.00936 0.94861 1.02213 1.21870 1.00378 0.94432 0.98677 1.21440 0.99322 0.92383 0.87405 1.48290 1.18621 1.53522 1.12813 1.19050 0.78557 0.91726 0.97356 1.21677 0.93647 0.97645 1.45415 0.93354 1.25609 0.94753 1.02235 0.95074 1.70008 0.99017 1.38140 1.48557 0.85568 0.78069 0.80142 0.78281 1.19860 1.20264 1.20043 1.20954 0.84260 0.79272 0.85475 1.90551 1.21896 1.50140 1.84542 1.21627 0.99878 1.01695 0.92728 1.20809 0.92618 0.99418 0.93974 0.90725 1.23199 0.98371 0.98163 0.98583 1.23537 1.00722 0.99462 0.95390 1.21379 0.94216 1.01267 0.96119 1.22589 0.97928 1.00287 0.94936 0.91083 0.93625 0.93371 0.90823 0.92737 0.91137 0.92943 0.93257 0.92643 0.91366 0.91382 0.96308 0.95121 0.92261 0.88855 0.89579 0.88503 0.84694 0.89769 0.89434 0.91062 0.89242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.56 8.95 71.98 0.64 -2.92 16 2 C -0.09 -2.39 2.92 -10.80 -0.03 -2.42 16 3 C -0.14 -3.07 9.19 71.98 0.66 -2.41 16 4 C -0.11 -3.78 5.01 30.59 0.15 -3.63 16 5 C 0.12 4.52 5.16 86.38 0.45 4.96 16 6 N -0.60 -26.25 2.46 -826.17 -2.03 -28.28 16 7 C 0.25 12.34 4.96 85.63 0.43 12.76 16 8 C -0.55 -28.77 9.28 25.60 0.24 -28.54 16 9 H 0.05 2.63 7.81 -2.91 -0.02 2.61 16 10 C 0.02 1.25 5.46 84.65 0.46 1.72 16 11 N -0.92 -50.44 13.29 21.45 0.28 -50.16 16 12 Si 0.95 42.07 29.54 68.60 2.03 44.10 16 13 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 14 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 15 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 16 C 0.51 21.84 7.47 87.66 0.66 22.50 16 17 O -0.59 -26.66 14.50 -3.02 -0.04 -26.71 16 18 C -0.12 -4.51 3.65 29.85 0.11 -4.40 16 19 C -0.05 -1.60 2.52 -10.86 -0.03 -1.63 16 20 H 0.07 2.52 7.90 -2.39 -0.02 2.50 16 21 C -0.16 -5.47 9.26 26.26 0.24 -5.22 16 22 C -0.17 -4.62 10.78 26.29 0.28 -4.34 16 23 C -0.09 -2.06 6.82 30.57 0.21 -1.85 16 24 C -0.12 -3.03 6.71 31.71 0.21 -2.82 16 25 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 26 H 0.04 1.24 6.57 -2.38 -0.02 1.23 16 27 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.07 1.27 8.14 -2.38 -0.02 1.26 16 31 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 34 H 0.07 2.66 8.07 -2.38 -0.02 2.64 16 35 H 0.07 2.67 5.85 -2.39 -0.01 2.66 16 36 H 0.02 0.97 8.07 -2.39 -0.02 0.95 16 37 H 0.03 1.53 6.44 -2.39 -0.02 1.51 16 38 H 0.27 13.90 8.31 -92.71 -0.77 13.13 16 39 H 0.09 3.35 7.40 -2.39 -0.02 3.33 16 40 H 0.09 3.55 7.99 -2.39 -0.02 3.53 16 41 H 0.10 3.65 7.58 -2.91 -0.02 3.63 16 42 H 0.14 3.06 8.06 -2.91 -0.02 3.04 16 43 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.09 1.66 8.14 -2.38 -0.02 1.64 16 45 H 0.07 1.86 7.91 -2.39 -0.02 1.84 16 46 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -59.47 366.76 5.83 -53.64 By element: Atomic # 1 Polarization: 24.73 SS G_CDS: 0.91 Total: 25.64 kcal Atomic # 6 Polarization: -22.91 SS G_CDS: 4.68 Total: -18.23 kcal Atomic # 7 Polarization: -76.69 SS G_CDS: -1.74 Total: -78.44 kcal Atomic # 8 Polarization: -26.66 SS G_CDS: -0.04 Total: -26.71 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.10 kcal Total: -59.47 5.83 -53.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103440590.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.864 kcal (2) G-P(sol) polarization free energy of solvation -59.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds