Wall clock time and date at job start Tue Mar 31 2020 01:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47575 * 2 1 4 4 C 1.53006 * 109.46809 * 119.99919 * 2 1 3 5 5 C 1.53001 * 109.47110 * 64.99691 * 4 2 1 6 6 N 1.46501 * 109.47118 * 180.02562 * 5 4 2 7 7 C 1.46503 * 119.99807 * 270.00177 * 6 5 4 8 8 C 1.50692 * 109.46919 * 269.99806 * 7 6 5 9 9 H 1.07999 * 120.00562 * 359.97438 * 8 7 6 10 10 C 1.37879 * 120.00333 * 180.02562 * 8 7 6 11 11 N 1.31512 * 120.00643 * 180.02562 * 10 8 7 12 12 Si 1.86805 * 119.99528 * 359.97438 * 10 8 7 13 13 H 1.48504 * 109.47276 * 90.00186 * 12 10 8 14 14 H 1.48508 * 109.47084 * 210.00242 * 12 10 8 15 15 H 1.48500 * 109.47172 * 329.99988 * 12 10 8 16 16 C 1.34773 * 120.00102 * 89.99599 * 6 5 4 17 17 O 1.21283 * 120.00089 * 0.02562 * 16 6 5 18 18 C 1.50699 * 120.00103 * 180.02562 * 16 6 5 19 19 C 1.53005 * 109.47226 * 180.02562 * 18 16 6 20 20 H 1.09002 * 110.34757 * 54.29546 * 19 18 16 21 21 C 1.51098 * 110.38352 * 292.00905 * 19 18 16 22 22 C 1.30527 * 111.10479 * 224.64064 * 21 19 18 23 23 C 1.51106 * 111.10257 * 359.97438 * 22 21 19 24 24 C 1.54635 * 110.48298 * 176.64830 * 19 18 16 25 25 H 1.09001 * 109.46882 * 300.01147 * 1 2 3 26 26 H 1.08998 * 109.46274 * 59.99947 * 1 2 3 27 27 H 1.08996 * 109.47424 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47395 * 239.98932 * 2 1 3 29 29 H 1.08999 * 109.47115 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.46937 * 299.99625 * 3 2 1 31 31 H 1.09001 * 109.47373 * 60.00001 * 3 2 1 32 32 H 1.09004 * 109.46812 * 304.99915 * 4 2 1 33 33 H 1.08998 * 109.47200 * 185.00054 * 4 2 1 34 34 H 1.08997 * 109.46827 * 60.00139 * 5 4 2 35 35 H 1.09002 * 109.46910 * 300.00139 * 5 4 2 36 36 H 1.08996 * 109.47137 * 29.99997 * 7 6 5 37 37 H 1.09001 * 109.46569 * 149.99938 * 7 6 5 38 38 H 0.97001 * 120.00048 * 179.97438 * 11 10 8 39 39 H 1.08995 * 109.47405 * 60.00323 * 18 16 6 40 40 H 1.09006 * 109.47268 * 300.00215 * 18 16 6 41 41 H 1.08004 * 124.44814 * 44.61972 * 21 19 18 42 42 H 1.07995 * 124.44980 * 180.02562 * 22 21 19 43 43 H 1.09001 * 110.38465 * 135.25063 * 23 22 21 44 44 H 1.08995 * 110.38777 * 257.51309 * 23 22 21 45 45 H 1.08994 * 111.04125 * 261.52111 * 24 19 18 46 46 H 1.09000 * 111.03531 * 25.46233 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6351 -2.1955 1.1881 6 7 2.1228 -2.8860 2.3846 7 6 3.4511 -3.5041 2.3833 8 6 3.3405 -4.9312 1.9123 9 1 2.3771 -5.3374 1.6415 10 6 4.4690 -5.7189 1.8282 11 7 4.3726 -6.9642 1.4166 12 14 6.1352 -5.0166 2.2973 13 1 6.3819 -5.2508 3.7429 14 1 7.1958 -5.6832 1.4997 15 1 6.1525 -3.5573 2.0223 16 6 1.3497 -2.9524 3.4865 17 8 0.2499 -2.4411 3.4874 18 6 1.8516 -3.6622 4.7175 19 6 0.7882 -3.5929 5.8154 20 1 -0.1625 -3.9783 5.4471 21 6 0.6268 -2.1718 6.3028 22 6 0.5713 -2.1253 7.6060 23 6 0.6859 -3.5078 8.2051 24 6 1.2447 -4.3864 7.0617 25 1 -0.3633 0.5140 0.8899 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8934 -0.5140 -0.8899 29 1 3.1301 1.4424 0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6768 1.9563 0.8900 32 1 1.6053 -0.2617 2.1370 33 1 3.1262 -0.6444 1.2953 34 1 2.0697 -2.6550 0.3004 35 1 0.5487 -2.2723 1.1421 36 1 4.1088 -2.9503 1.7135 37 1 3.8614 -3.4854 3.3930 38 1 5.1666 -7.5182 1.3571 39 1 2.7660 -3.1824 5.0661 40 1 2.0575 -4.7053 4.4769 41 1 0.5657 -1.3079 5.6575 42 1 0.4576 -1.2180 8.1807 43 1 1.3756 -3.4999 9.0491 44 1 -0.2937 -3.8677 8.5196 45 1 0.7977 -5.3803 7.0781 46 1 2.3319 -4.4473 7.1102 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103440591.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:45:45 Heat of formation + Delta-G solvation = -47.598738 kcal Electronic energy + Delta-G solvation = -22602.707788 eV Core-core repulsion = 19491.547026 eV Total energy + Delta-G solvation = -3111.160762 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.59416 -38.08561 -36.48931 -34.77545 -32.51832 -31.30792 -29.33038 -28.68679 -27.48582 -27.04451 -25.21655 -22.88429 -22.32132 -20.24034 -19.80233 -18.72710 -17.92606 -17.03642 -16.39768 -15.69475 -15.55649 -14.96873 -14.73159 -14.54284 -14.00875 -13.71951 -13.35327 -13.05832 -12.68152 -12.55723 -12.22844 -12.09617 -11.88479 -11.78396 -11.60765 -11.54844 -11.41889 -11.10337 -11.03155 -10.96924 -10.84927 -10.75919 -10.64742 -10.46051 -10.37554 -10.22621 -10.14086 -9.62198 -8.97795 -8.72803 -8.65060 -7.69960 -6.22550 -4.24064 2.53785 3.16191 3.24547 3.25748 3.42441 3.87992 4.25502 4.84450 4.87085 5.02286 5.07970 5.09385 5.10802 5.18808 5.36996 5.52939 5.63850 5.69681 5.74778 5.77906 5.80224 5.84084 5.86840 5.92609 5.95711 5.98779 6.06800 6.08624 6.20668 6.23433 6.29549 6.35203 6.36372 6.47397 6.51100 6.58144 6.60321 6.62918 6.72390 6.80984 7.15955 7.38974 7.45252 8.16559 8.42997 8.82677 8.99911 9.37214 10.90121 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.008535 B = 0.007600 C = 0.004474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3279.871768 B = 3683.119248 C = 6256.184007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.094 4.094 3 C -0.144 4.144 4 C -0.127 4.127 5 C 0.119 3.881 6 N -0.592 5.592 7 C 0.208 3.792 8 C -0.540 4.540 9 H 0.078 0.922 10 C 0.076 3.924 11 N -0.891 5.891 12 Si 0.870 3.130 13 H -0.273 1.273 14 H -0.283 1.283 15 H -0.264 1.264 16 C 0.519 3.481 17 O -0.569 6.569 18 C -0.130 4.130 19 C -0.054 4.054 20 H 0.087 0.913 21 C -0.128 4.128 22 C -0.196 4.196 23 C -0.096 4.096 24 C -0.123 4.123 25 H 0.053 0.947 26 H 0.048 0.952 27 H 0.059 0.941 28 H 0.070 0.930 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.032 0.968 37 H 0.029 0.971 38 H 0.266 0.734 39 H 0.085 0.915 40 H 0.107 0.893 41 H 0.123 0.877 42 H 0.117 0.883 43 H 0.064 0.936 44 H 0.069 0.931 45 H 0.072 0.928 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.713 11.041 5.499 12.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.113 4.113 3 C -0.202 4.202 4 C -0.166 4.166 5 C -0.005 4.005 6 N -0.322 5.322 7 C 0.087 3.913 8 C -0.578 4.578 9 H 0.096 0.904 10 C -0.127 4.127 11 N -0.529 5.529 12 Si 0.697 3.303 13 H -0.198 1.198 14 H -0.209 1.209 15 H -0.189 1.189 16 C 0.308 3.692 17 O -0.450 6.450 18 C -0.169 4.169 19 C -0.072 4.072 20 H 0.105 0.895 21 C -0.145 4.145 22 C -0.214 4.214 23 C -0.133 4.133 24 C -0.160 4.160 25 H 0.072 0.928 26 H 0.067 0.933 27 H 0.078 0.922 28 H 0.088 0.912 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.050 0.950 37 H 0.047 0.953 38 H 0.076 0.924 39 H 0.104 0.896 40 H 0.125 0.875 41 H 0.140 0.860 42 H 0.135 0.865 43 H 0.082 0.918 44 H 0.087 0.913 45 H 0.091 0.909 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.145 11.111 5.443 13.049 hybrid contribution 1.136 0.176 0.070 1.151 sum -3.010 11.287 5.513 12.917 Atomic orbital electron populations 1.21868 0.95263 1.02142 1.01118 1.21055 0.95943 0.95846 0.98497 1.21821 1.00801 0.96254 1.01304 1.22001 1.00774 0.96130 0.97696 1.21364 1.00123 0.90765 0.88211 1.47937 1.18574 1.53526 1.12174 1.19790 0.79838 0.94266 0.97405 1.21391 0.96405 0.94327 1.45721 0.90414 1.24879 0.98804 0.94618 0.94422 1.69893 1.29835 1.06966 1.46164 0.86942 0.84315 0.79890 0.79184 1.19816 1.20893 1.18901 1.20501 0.84520 0.79400 0.84784 1.90583 1.21174 1.49154 1.84116 1.21684 0.99019 1.03402 0.92827 1.20835 0.98930 0.93254 0.94221 0.89469 1.23366 0.97547 0.97988 0.95642 1.23175 1.04485 0.97629 0.96106 1.21302 1.00608 0.93250 0.98120 1.22560 1.01196 0.98396 0.93878 0.92799 0.93290 0.92186 0.91154 0.92872 0.93017 0.92936 0.91970 0.92134 0.90602 0.90597 0.95008 0.95270 0.92373 0.89628 0.87473 0.85952 0.86528 0.91784 0.91285 0.90920 0.90838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 8.95 37.16 0.33 -1.50 16 2 C -0.09 -1.21 2.92 -90.62 -0.26 -1.48 16 3 C -0.14 -1.61 9.19 37.16 0.34 -1.27 16 4 C -0.13 -1.96 5.01 -26.73 -0.13 -2.09 16 5 C 0.12 2.15 5.16 -4.04 -0.02 2.13 16 6 N -0.59 -12.07 2.46 -175.06 -0.43 -12.50 16 7 C 0.21 4.58 4.03 -5.20 -0.02 4.56 16 8 C -0.54 -14.12 9.84 -34.44 -0.34 -14.46 16 9 H 0.08 2.29 8.06 -52.49 -0.42 1.86 16 10 C 0.08 2.04 5.47 -17.82 -0.10 1.95 16 11 N -0.89 -25.74 13.96 55.43 0.77 -24.96 16 12 Si 0.87 19.69 27.47 -169.99 -4.67 15.02 16 13 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 14 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 15 H -0.26 -5.68 6.54 56.52 0.37 -5.31 16 16 C 0.52 10.45 7.45 -10.99 -0.08 10.37 16 17 O -0.57 -12.22 14.37 5.55 0.08 -12.14 16 18 C -0.13 -2.31 3.66 -27.88 -0.10 -2.41 16 19 C -0.05 -0.85 2.53 -90.71 -0.23 -1.08 16 20 H 0.09 1.49 7.96 -51.93 -0.41 1.08 16 21 C -0.13 -1.95 9.23 -35.70 -0.33 -2.28 16 22 C -0.20 -2.57 10.78 -35.70 -0.38 -2.96 16 23 C -0.10 -1.15 6.81 -26.82 -0.18 -1.33 16 24 C -0.12 -1.63 6.71 -25.00 -0.17 -1.80 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.80 6.56 -51.93 -0.34 0.46 16 28 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.08 1.40 8.07 -51.93 -0.42 0.98 16 35 H 0.08 1.41 5.84 -51.93 -0.30 1.11 16 36 H 0.03 0.70 7.13 -51.93 -0.37 0.33 16 37 H 0.03 0.62 5.87 -51.93 -0.30 0.31 16 38 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 39 H 0.09 1.43 7.40 -51.93 -0.38 1.05 16 40 H 0.11 2.05 8.00 -51.93 -0.42 1.63 16 41 H 0.12 2.00 7.44 -52.48 -0.39 1.61 16 42 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 43 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 45 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 46 H 0.07 0.96 7.92 -51.93 -0.41 0.55 16 LS Contribution 362.92 15.07 5.47 5.47 Total: -1.00 -28.72 362.92 -8.87 -37.59 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -8.42 Total: 5.16 kcal Atomic # 6 Polarization: -11.96 SS G_CDS: -1.68 Total: -13.64 kcal Atomic # 7 Polarization: -37.80 SS G_CDS: 0.34 Total: -37.46 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: 0.08 Total: -12.14 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -4.67 Total: 15.02 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -28.72 -8.87 -37.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103440591.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.007 kcal (2) G-P(sol) polarization free energy of solvation -28.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds