Wall clock time and date at job start Tue Mar 31 2020 01:18:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.46781 * 2 1 4 4 C 1.52993 * 109.47324 * 305.66392 * 3 2 1 5 5 C 1.53001 * 109.47114 * 293.17148 * 4 3 2 6 6 C 1.53004 * 109.46847 * 65.66154 * 3 2 1 7 7 N 1.46496 * 109.46983 * 64.99960 * 6 3 2 8 8 C 1.46504 * 120.00050 * 90.00169 * 7 6 3 9 9 C 1.50694 * 109.47135 * 86.27112 * 8 7 6 10 10 H 1.07997 * 120.00149 * 359.97438 * 9 8 7 11 11 C 1.37882 * 119.99617 * 179.97438 * 9 8 7 12 12 N 1.31514 * 120.00250 * 0.02562 * 11 9 8 13 13 Si 1.86808 * 119.99607 * 179.97438 * 11 9 8 14 14 H 1.48496 * 109.47157 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.46816 * 120.00163 * 13 11 9 16 16 H 1.48495 * 109.46874 * 240.00038 * 13 11 9 17 17 C 1.34777 * 119.99921 * 269.72052 * 7 6 3 18 18 O 1.21275 * 120.00214 * 5.00698 * 17 7 6 19 19 C 1.50704 * 120.00051 * 184.99920 * 17 7 6 20 20 C 1.54634 * 111.03726 * 279.73184 * 19 17 7 21 21 C 1.51104 * 104.72204 * 217.33135 * 20 19 17 22 22 C 1.30527 * 111.10715 * 16.43650 * 21 20 19 23 23 C 1.51104 * 111.10370 * 359.97438 * 22 21 20 24 24 H 1.08999 * 109.47187 * 306.61865 * 1 2 3 25 25 H 1.09003 * 109.47477 * 66.62338 * 1 2 3 26 26 H 1.09009 * 109.46781 * 186.62487 * 1 2 3 27 27 H 1.09001 * 109.47279 * 240.00541 * 2 1 3 28 28 H 1.08991 * 109.47764 * 119.99929 * 2 1 3 29 29 H 1.09000 * 109.47339 * 185.65788 * 3 2 1 30 30 H 1.09003 * 109.47645 * 53.17241 * 4 3 2 31 31 H 1.09006 * 109.47482 * 173.17437 * 4 3 2 32 32 H 1.08997 * 109.47743 * 185.43373 * 5 4 3 33 33 H 1.09002 * 109.47303 * 305.43414 * 5 4 3 34 34 H 1.09005 * 109.46858 * 65.43473 * 5 4 3 35 35 H 1.08998 * 109.46992 * 305.00008 * 6 3 2 36 36 H 1.09002 * 109.47182 * 184.99670 * 6 3 2 37 37 H 1.09002 * 109.47072 * 206.27608 * 8 7 6 38 38 H 1.08999 * 109.46846 * 326.27112 * 8 7 6 39 39 H 0.97002 * 119.99477 * 180.02562 * 12 11 9 40 40 H 1.09007 * 110.91183 * 43.73617 * 19 17 7 41 41 H 1.09002 * 110.38710 * 336.13892 * 20 19 17 42 42 H 1.09001 * 110.39203 * 98.52318 * 20 19 17 43 43 H 1.07996 * 124.44899 * 196.45485 * 21 20 19 44 44 H 1.08002 * 124.45088 * 180.02562 * 22 21 20 45 45 H 1.08996 * 110.38941 * 224.75368 * 23 22 21 46 46 H 1.09002 * 110.48072 * 102.42094 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 1.4170 2.2037 -1.1719 5 6 1.9428 1.6306 -2.4894 6 6 1.6493 2.1215 1.3144 7 7 2.3410 1.4659 2.4270 8 6 3.6577 1.9448 2.8551 9 6 3.4862 3.0657 3.8476 10 1 2.4955 3.3894 4.1308 11 6 4.5941 3.6781 4.3941 12 7 5.8005 3.2843 4.0489 13 14 4.3815 5.0681 5.6239 14 1 2.9342 5.3194 5.8415 15 1 5.0171 4.6910 6.9119 16 1 5.0242 6.2984 5.0962 17 6 1.7635 0.4258 3.0603 18 8 0.7143 -0.0256 2.6528 19 6 2.4218 -0.1764 4.2749 20 6 3.5596 -1.1415 3.8686 21 6 3.4797 -2.2719 4.8681 22 6 2.3330 -2.2679 5.4916 23 6 1.4570 -1.1338 5.0122 24 1 -0.3633 0.6130 0.8248 25 1 -0.3634 0.4077 -0.9433 26 1 -0.3633 -1.0209 0.1186 27 1 1.8933 -0.5137 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 3.1252 1.4444 -0.1013 30 1 0.3325 2.0996 -1.1375 31 1 1.6831 3.2586 -1.1027 32 1 1.5755 2.2331 -3.3202 33 1 3.0327 1.6464 -2.4833 34 1 1.5949 0.6039 -2.6036 35 1 0.5719 2.0414 1.4585 36 1 1.9340 3.1731 1.2787 37 1 4.2076 1.1274 3.3216 38 1 4.2115 2.3077 1.9893 39 1 6.5798 3.7149 4.4337 40 1 2.7883 0.6015 4.9448 41 1 3.3969 -1.5161 2.8579 42 1 4.5253 -0.6408 3.9380 43 1 4.2681 -2.9888 5.0439 44 1 2.0480 -2.9809 6.2510 45 1 0.9932 -0.6281 5.8591 46 1 0.6940 -1.5043 4.3277 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000151674406.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:18:14 Heat of formation + Delta-G solvation = -53.457680 kcal Electronic energy + Delta-G solvation = -23480.362908 eV Core-core repulsion = 20368.948083 eV Total energy + Delta-G solvation = -3111.414825 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.42064 -39.10039 -37.65438 -36.39707 -34.39596 -31.98104 -30.90192 -29.64077 -29.07294 -28.43682 -25.49304 -24.95151 -24.20502 -22.35012 -20.03752 -19.67901 -19.53408 -18.59984 -18.04313 -17.28151 -16.71214 -16.56700 -16.33751 -16.15598 -15.05971 -14.85585 -14.37013 -14.27777 -13.93508 -13.82012 -13.48556 -13.43517 -13.32940 -12.98210 -12.88484 -12.78796 -12.72352 -12.65564 -12.41317 -12.23314 -12.12623 -12.06072 -11.98971 -11.95796 -11.64053 -11.36035 -11.23162 -11.18367 -10.64346 -10.41959 -9.75262 -9.31845 -8.19552 -6.34129 1.38541 1.39895 1.41993 1.52079 1.83401 2.33584 2.47507 3.09955 3.63661 3.77390 3.86316 3.93888 4.00944 4.09372 4.33551 4.39191 4.43405 4.49001 4.61120 4.67053 4.72429 4.75062 4.78900 4.85813 4.89402 4.91007 4.96035 5.01483 5.02608 5.08108 5.10957 5.16474 5.25248 5.28182 5.35306 5.37294 5.46333 5.56201 5.60516 5.68917 5.70205 5.93915 6.06493 6.07840 6.62957 6.85926 7.34259 7.48742 8.85452 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.011016 B = 0.007619 C = 0.005101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2541.096568 B = 3674.128913 C = 5487.469318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.103 4.103 3 C -0.094 4.094 4 C -0.115 4.115 5 C -0.145 4.145 6 C 0.121 3.879 7 N -0.595 5.595 8 C 0.251 3.749 9 C -0.545 4.545 10 H 0.050 0.950 11 C 0.023 3.977 12 N -0.918 5.918 13 Si 0.953 3.047 14 H -0.272 1.272 15 H -0.277 1.277 16 H -0.278 1.278 17 C 0.521 3.479 18 O -0.569 6.569 19 C -0.116 4.116 20 C -0.082 4.082 21 C -0.170 4.170 22 C -0.160 4.160 23 C -0.086 4.086 24 H 0.050 0.950 25 H 0.061 0.939 26 H 0.038 0.962 27 H 0.060 0.940 28 H 0.038 0.962 29 H 0.052 0.948 30 H 0.073 0.927 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.047 0.953 34 H 0.057 0.943 35 H 0.072 0.928 36 H 0.065 0.935 37 H 0.038 0.962 38 H 0.013 0.987 39 H 0.267 0.733 40 H 0.089 0.911 41 H 0.066 0.934 42 H 0.067 0.933 43 H 0.149 0.851 44 H 0.153 0.847 45 H 0.073 0.927 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.916 -7.102 -4.809 10.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.141 4.141 3 C -0.114 4.114 4 C -0.153 4.153 5 C -0.202 4.202 6 C -0.002 4.002 7 N -0.324 5.324 8 C 0.130 3.870 9 C -0.584 4.584 10 H 0.068 0.932 11 C -0.178 4.178 12 N -0.557 5.557 13 Si 0.779 3.221 14 H -0.197 1.197 15 H -0.203 1.203 16 H -0.204 1.204 17 C 0.310 3.690 18 O -0.451 6.451 19 C -0.137 4.137 20 C -0.119 4.119 21 C -0.188 4.188 22 C -0.177 4.177 23 C -0.124 4.124 24 H 0.069 0.931 25 H 0.080 0.920 26 H 0.057 0.943 27 H 0.079 0.921 28 H 0.056 0.944 29 H 0.071 0.929 30 H 0.092 0.908 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.066 0.934 34 H 0.076 0.924 35 H 0.090 0.910 36 H 0.083 0.917 37 H 0.056 0.944 38 H 0.031 0.969 39 H 0.076 0.924 40 H 0.108 0.892 41 H 0.084 0.916 42 H 0.086 0.914 43 H 0.166 0.834 44 H 0.171 0.829 45 H 0.092 0.908 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -6.256 -7.262 -5.010 10.816 hybrid contribution 0.488 1.090 0.778 1.425 sum -5.767 -6.172 -4.233 9.448 Atomic orbital electron populations 1.21649 0.95192 1.00825 1.00972 1.21381 0.96930 0.95503 1.00264 1.21502 0.99443 0.96041 0.94400 1.21539 1.00955 0.99067 0.93757 1.21734 1.00743 1.01251 0.96487 1.21521 0.97038 0.95926 0.85699 1.48123 1.20617 1.31220 1.32472 1.19108 0.79177 0.94519 0.94160 1.21716 0.92602 1.18571 1.25508 0.93169 1.25620 0.94757 0.99188 0.98215 1.70015 0.98247 1.42956 1.44509 0.85573 0.78183 0.79306 0.79028 1.19660 1.20263 1.20382 1.20435 0.84617 0.79643 0.84260 1.90554 1.24343 1.62505 1.67683 1.22104 0.97582 0.98430 0.95583 1.21213 0.97495 0.94380 0.98855 1.23359 0.99029 0.98970 0.97393 1.23435 0.95257 0.98894 1.00126 1.21280 0.97601 0.94240 0.99235 0.93102 0.92035 0.94252 0.92130 0.94362 0.92909 0.90821 0.92110 0.91490 0.93379 0.92420 0.90998 0.91689 0.94437 0.96938 0.92374 0.89245 0.91605 0.91411 0.83381 0.82918 0.90845 0.89962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.85 8.08 71.98 0.58 -3.27 16 2 C -0.10 -3.26 4.84 30.60 0.15 -3.12 16 3 C -0.09 -3.01 2.35 -10.79 -0.03 -3.04 16 4 C -0.12 -2.93 5.10 30.59 0.16 -2.78 16 5 C -0.14 -3.13 9.57 71.98 0.69 -2.44 16 6 C 0.12 4.53 4.91 86.38 0.42 4.96 16 7 N -0.60 -25.16 2.34 -826.15 -1.93 -27.09 16 8 C 0.25 12.13 4.81 85.63 0.41 12.54 16 9 C -0.55 -28.63 9.03 25.60 0.23 -28.40 16 10 H 0.05 2.69 7.81 -2.91 -0.02 2.67 16 11 C 0.02 1.19 5.46 84.66 0.46 1.66 16 12 N -0.92 -50.63 13.29 21.45 0.28 -50.34 16 13 Si 0.95 42.07 29.54 68.60 2.03 44.10 16 14 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 15 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 16 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 17 C 0.52 21.42 5.59 87.66 0.49 21.91 16 18 O -0.57 -23.75 10.96 -3.01 -0.03 -23.78 16 19 C -0.12 -4.38 2.51 -10.43 -0.03 -4.41 16 20 C -0.08 -2.81 5.66 30.53 0.17 -2.64 16 21 C -0.17 -4.72 10.77 26.26 0.28 -4.44 16 22 C -0.16 -4.24 10.78 26.26 0.28 -3.96 16 23 C -0.09 -2.76 6.27 30.53 0.19 -2.57 16 24 H 0.05 1.72 4.89 -2.39 -0.01 1.71 16 25 H 0.06 1.53 6.59 -2.39 -0.02 1.51 16 26 H 0.04 1.16 8.14 -2.38 -0.02 1.14 16 27 H 0.06 1.71 7.03 -2.39 -0.02 1.69 16 28 H 0.04 1.42 5.48 -2.39 -0.01 1.41 16 29 H 0.05 1.84 8.14 -2.39 -0.02 1.83 16 30 H 0.07 1.76 6.10 -2.39 -0.01 1.75 16 31 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 32 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.06 1.20 7.02 -2.38 -0.02 1.18 16 35 H 0.07 2.69 5.72 -2.39 -0.01 2.68 16 36 H 0.06 2.51 8.07 -2.39 -0.02 2.49 16 37 H 0.04 1.86 4.96 -2.39 -0.01 1.85 16 38 H 0.01 0.65 8.10 -2.39 -0.02 0.63 16 39 H 0.27 13.93 8.31 -92.71 -0.77 13.16 16 40 H 0.09 3.81 7.32 -2.38 -0.02 3.80 16 41 H 0.07 2.29 7.88 -2.39 -0.02 2.27 16 42 H 0.07 2.51 6.93 -2.39 -0.02 2.49 16 43 H 0.15 3.29 8.06 -2.91 -0.02 3.27 16 44 H 0.15 3.08 8.06 -2.91 -0.02 3.05 16 45 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 46 H 0.08 2.80 6.85 -2.39 -0.02 2.79 16 Total: -1.00 -57.25 347.19 5.76 -51.49 By element: Atomic # 1 Polarization: 24.67 SS G_CDS: 0.94 Total: 25.62 kcal Atomic # 6 Polarization: -24.46 SS G_CDS: 4.47 Total: -19.99 kcal Atomic # 7 Polarization: -75.79 SS G_CDS: -1.65 Total: -77.43 kcal Atomic # 8 Polarization: -23.75 SS G_CDS: -0.03 Total: -23.78 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.10 kcal Total: -57.25 5.76 -51.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000151674406.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.967 kcal (2) G-P(sol) polarization free energy of solvation -57.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds