Wall clock time and date at job start Tue Mar 31 2020 01:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47279 * 2 1 4 4 C 1.52998 * 109.47278 * 119.99983 * 2 1 3 5 5 C 1.53001 * 109.47210 * 175.00055 * 4 2 1 6 6 N 1.46496 * 109.47306 * 180.02562 * 5 4 2 7 7 C 1.46507 * 120.00047 * 270.00087 * 6 5 4 8 8 C 1.50701 * 109.46782 * 269.99887 * 7 6 5 9 9 H 1.07993 * 120.00165 * 359.97438 * 8 7 6 10 10 C 1.37879 * 119.99519 * 180.02562 * 8 7 6 11 11 N 1.31517 * 119.99677 * 180.02562 * 10 8 7 12 12 Si 1.86798 * 120.00228 * 359.97438 * 10 8 7 13 13 H 1.48498 * 109.47205 * 90.00215 * 12 10 8 14 14 H 1.48503 * 109.47051 * 210.00265 * 12 10 8 15 15 H 1.48504 * 109.47193 * 330.00039 * 12 10 8 16 16 C 1.34776 * 120.00081 * 89.99627 * 6 5 4 17 17 O 1.21277 * 120.00103 * 0.02562 * 16 6 5 18 18 C 1.50706 * 120.00001 * 180.02562 * 16 6 5 19 19 H 1.09000 * 115.54592 * 29.60912 * 18 16 6 20 20 C 1.52995 * 117.51976 * 243.90254 * 18 16 6 21 21 C 1.52997 * 60.00172 * 252.52171 * 20 18 16 22 22 H 1.09000 * 117.51723 * 252.52053 * 21 20 18 23 23 C 1.52999 * 117.49992 * 107.49198 * 21 20 18 24 24 C 1.53001 * 117.49951 * 186.26056 * 23 21 20 25 25 C 1.52995 * 117.50261 * 117.59636 * 23 21 20 26 26 H 1.09002 * 109.46823 * 300.00241 * 1 2 3 27 27 H 1.09000 * 109.47162 * 59.99645 * 1 2 3 28 28 H 1.08998 * 109.47251 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47409 * 240.00239 * 2 1 3 30 30 H 1.09002 * 109.47390 * 60.00106 * 3 2 1 31 31 H 1.08997 * 109.47232 * 180.02562 * 3 2 1 32 32 H 1.09005 * 109.47032 * 299.99857 * 3 2 1 33 33 H 1.08994 * 109.47069 * 55.00154 * 4 2 1 34 34 H 1.09003 * 109.47250 * 294.99981 * 4 2 1 35 35 H 1.08998 * 109.47493 * 60.00222 * 5 4 2 36 36 H 1.09003 * 109.46953 * 300.00107 * 5 4 2 37 37 H 1.08999 * 109.47131 * 29.99893 * 7 6 5 38 38 H 1.08998 * 109.46991 * 149.99781 * 7 6 5 39 39 H 0.97004 * 119.99687 * 179.97438 * 11 10 8 40 40 H 1.09003 * 117.49798 * 0.02562 * 20 18 16 41 41 H 1.09000 * 117.49401 * 145.02722 * 20 18 16 42 42 H 1.09003 * 115.54528 * 331.92428 * 23 21 20 43 43 H 1.09003 * 117.49803 * 359.97438 * 24 23 21 44 44 H 1.08996 * 117.49964 * 145.01899 * 24 23 21 45 45 H 1.08994 * 117.50138 * 214.98100 * 25 23 21 46 46 H 1.09005 * 117.49526 * 359.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.8310 1.1879 6 7 4.0532 -1.5221 2.3838 7 6 4.4016 -0.7549 3.5823 8 6 5.8555 -0.3630 3.5227 9 1 6.4597 -0.6564 2.6770 10 6 6.4146 0.3692 4.5485 11 7 7.6834 0.7117 4.4963 12 14 5.3698 0.8761 6.0116 13 1 5.4391 -0.1758 7.0575 14 1 5.8792 2.1572 6.5635 15 1 3.9605 1.0499 5.5770 16 6 4.1818 -2.8637 2.3814 17 8 3.8938 -3.4988 1.3892 18 6 4.6836 -3.5747 3.6118 19 1 4.4538 -3.0907 4.5610 20 6 6.0147 -4.3213 3.5034 21 6 4.7029 -5.1044 3.5852 22 1 4.4855 -5.6267 4.5169 23 6 4.2118 -5.7951 2.3114 24 6 2.8314 -6.4535 2.3521 25 6 4.0930 -7.3203 2.3357 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6054 -1.7197 1.2951 34 1 1.7517 -0.1583 2.1370 35 1 3.9995 0.1675 1.1420 36 1 3.8532 -1.3939 0.3002 37 1 3.7850 0.1426 3.6311 38 1 4.2257 -1.3652 4.4681 39 1 8.0766 1.2272 5.2178 40 1 6.5280 -4.2979 2.5421 41 1 6.6607 -4.3282 4.3814 42 1 4.5198 -5.3291 1.3754 43 1 2.2732 -6.3950 3.2865 44 1 2.2313 -6.4211 1.4428 45 1 4.3224 -7.8576 1.4156 46 1 4.3651 -7.8316 3.2591 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000175992947.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:47:03 Heat of formation + Delta-G solvation = -1.352391 kcal Electronic energy + Delta-G solvation = -22738.028552 eV Core-core repulsion = 19628.873182 eV Total energy + Delta-G solvation = -3109.155370 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.72936 -37.61788 -36.37104 -34.74934 -34.60681 -32.48743 -29.58245 -27.52261 -27.02067 -24.70770 -23.25200 -22.65413 -22.15852 -21.64317 -19.99857 -19.74565 -17.93896 -17.01420 -16.59028 -15.61005 -15.16316 -15.05243 -14.64415 -14.22786 -14.01329 -13.63334 -13.50498 -13.08949 -12.73987 -12.49797 -12.35871 -12.11027 -12.05717 -11.84137 -11.59478 -11.35600 -11.21482 -11.03592 -10.86451 -10.81873 -10.79568 -10.67052 -10.47767 -10.35890 -10.28919 -10.13134 -9.62256 -9.56127 -9.16332 -8.73845 -8.64093 -7.69807 -6.20149 -4.20601 3.16283 3.19434 3.24843 3.26191 3.73899 4.06276 4.26950 4.60449 4.83441 5.01882 5.05162 5.10465 5.11636 5.20484 5.27216 5.31680 5.56248 5.61222 5.68539 5.69072 5.69714 5.75497 5.81912 5.84957 5.86890 5.96116 5.98162 6.08131 6.10217 6.20523 6.23309 6.32460 6.34389 6.36164 6.38209 6.51317 6.52291 6.61227 6.63148 6.74108 6.86295 7.39848 7.46950 8.17332 8.44257 8.85519 9.00810 9.39676 10.92758 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.009276 B = 0.007660 C = 0.004602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3017.720189 B = 3654.370613 C = 6082.670781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.093 4.093 3 C -0.150 4.150 4 C -0.127 4.127 5 C 0.120 3.880 6 N -0.587 5.587 7 C 0.209 3.791 8 C -0.534 4.534 9 H 0.078 0.922 10 C 0.076 3.924 11 N -0.892 5.892 12 Si 0.869 3.131 13 H -0.274 1.274 14 H -0.283 1.283 15 H -0.265 1.265 16 C 0.550 3.450 17 O -0.562 6.562 18 C -0.169 4.169 19 H 0.122 0.878 20 C -0.131 4.131 21 C -0.105 4.105 22 H 0.102 0.898 23 C -0.103 4.103 24 C -0.175 4.175 25 C -0.194 4.194 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.069 0.931 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.049 0.951 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.080 0.920 36 H 0.072 0.928 37 H 0.031 0.969 38 H 0.029 0.971 39 H 0.265 0.735 40 H 0.097 0.903 41 H 0.101 0.899 42 H 0.132 0.868 43 H 0.085 0.915 44 H 0.088 0.912 45 H 0.087 0.913 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.347 -6.294 -3.559 12.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 C -0.207 4.207 4 C -0.166 4.166 5 C -0.003 4.003 6 N -0.316 5.316 7 C 0.088 3.912 8 C -0.572 4.572 9 H 0.096 0.904 10 C -0.127 4.127 11 N -0.530 5.530 12 Si 0.695 3.305 13 H -0.199 1.199 14 H -0.209 1.209 15 H -0.189 1.189 16 C 0.339 3.661 17 O -0.444 6.444 18 C -0.190 4.190 19 H 0.139 0.861 20 C -0.169 4.169 21 C -0.124 4.124 22 H 0.120 0.880 23 C -0.120 4.120 24 C -0.212 4.212 25 C -0.231 4.231 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.088 0.912 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.068 0.932 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.098 0.902 36 H 0.091 0.909 37 H 0.049 0.951 38 H 0.047 0.953 39 H 0.076 0.924 40 H 0.115 0.885 41 H 0.120 0.880 42 H 0.149 0.851 43 H 0.104 0.896 44 H 0.106 0.894 45 H 0.106 0.894 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -10.346 -6.473 -3.960 12.830 hybrid contribution -0.361 0.604 1.134 1.334 sum -10.706 -5.869 -2.826 12.532 Atomic orbital electron populations 1.21819 0.95607 1.01427 1.01318 1.21045 0.95333 0.96377 0.98502 1.21911 1.01750 0.95800 1.01284 1.22000 0.96621 1.00466 0.97522 1.21368 0.92754 0.97810 0.88361 1.47851 1.62924 1.05701 1.15123 1.19815 0.97108 0.91433 0.82858 1.21361 0.93295 1.34791 1.07756 0.90430 1.24861 0.94761 0.95261 0.97847 1.69895 1.11768 1.38146 1.33176 0.86966 0.81241 0.78763 0.83485 1.19929 1.20904 1.18925 1.19454 0.76766 0.81993 0.87929 1.90515 1.52779 1.65558 1.35513 1.22213 1.04012 0.93544 0.99197 0.86060 1.22836 0.89602 1.00672 1.03778 1.21808 1.01480 0.91332 0.97759 0.87959 1.22024 0.98913 0.91908 0.99185 1.22758 0.91119 1.04984 1.02313 1.22981 1.03337 0.94493 1.02294 0.92889 0.93030 0.92915 0.91250 0.92726 0.91977 0.93184 0.91941 0.92075 0.90212 0.90949 0.95067 0.95307 0.92447 0.88479 0.88030 0.85061 0.89649 0.89375 0.89409 0.89512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.19 37.16 0.34 -1.27 16 2 C -0.09 -1.20 2.92 -90.62 -0.26 -1.46 16 3 C -0.15 -1.85 8.95 37.16 0.33 -1.51 16 4 C -0.13 -1.96 5.01 -26.73 -0.13 -2.09 16 5 C 0.12 2.17 5.16 -4.04 -0.02 2.15 16 6 N -0.59 -12.02 2.46 -175.05 -0.43 -12.45 16 7 C 0.21 4.63 4.06 -5.19 -0.02 4.61 16 8 C -0.53 -14.01 9.94 -34.44 -0.34 -14.36 16 9 H 0.08 2.30 8.06 -52.49 -0.42 1.87 16 10 C 0.08 2.04 5.47 -17.82 -0.10 1.94 16 11 N -0.89 -25.85 13.96 55.43 0.77 -25.08 16 12 Si 0.87 19.79 27.47 -169.99 -4.67 15.12 16 13 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 14 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 15 H -0.26 -5.72 6.54 56.52 0.37 -5.35 16 16 C 0.55 11.17 7.43 -10.98 -0.08 11.09 16 17 O -0.56 -11.87 12.69 5.56 0.07 -11.80 16 18 C -0.17 -3.09 5.38 -91.77 -0.49 -3.59 16 19 H 0.12 2.20 6.27 -51.93 -0.33 1.87 16 20 C -0.13 -2.22 9.96 -26.73 -0.27 -2.49 16 21 C -0.11 -1.65 5.85 -90.62 -0.53 -2.18 16 22 H 0.10 1.41 8.14 -51.93 -0.42 0.98 16 23 C -0.10 -1.61 4.32 -90.62 -0.39 -2.00 16 24 C -0.17 -2.45 10.26 -26.69 -0.27 -2.72 16 25 C -0.19 -2.51 10.25 -26.69 -0.27 -2.78 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.81 6.57 -51.93 -0.34 0.47 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.08 1.46 6.50 -51.93 -0.34 1.12 16 36 H 0.07 1.34 7.42 -51.93 -0.39 0.96 16 37 H 0.03 0.69 7.13 -51.93 -0.37 0.32 16 38 H 0.03 0.62 5.36 -51.93 -0.28 0.34 16 39 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 40 H 0.10 1.72 8.14 -51.93 -0.42 1.29 16 41 H 0.10 1.59 8.14 -51.93 -0.42 1.16 16 42 H 0.13 2.39 5.97 -51.93 -0.31 2.08 16 43 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 45 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 46 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 365.18 15.07 5.50 5.50 Total: -1.00 -28.53 365.18 -9.55 -38.08 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: -8.28 Total: 7.28 kcal Atomic # 6 Polarization: -14.13 SS G_CDS: -2.52 Total: -16.64 kcal Atomic # 7 Polarization: -37.88 SS G_CDS: 0.34 Total: -37.53 kcal Atomic # 8 Polarization: -11.87 SS G_CDS: 0.07 Total: -11.80 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -4.67 Total: 15.12 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -28.53 -9.55 -38.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175992947.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.725 kcal (2) G-P(sol) polarization free energy of solvation -28.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds