Wall clock time and date at job start Tue Mar 31 2020 01:47:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47279 * 2 1 4 4 C 1.52998 * 109.47278 * 119.99983 * 2 1 3 5 5 C 1.53001 * 109.47210 * 175.00055 * 4 2 1 6 6 N 1.46496 * 109.47306 * 180.02562 * 5 4 2 7 7 C 1.46507 * 120.00047 * 270.00087 * 6 5 4 8 8 C 1.50701 * 109.46782 * 269.99887 * 7 6 5 9 9 H 1.07993 * 120.00165 * 359.97438 * 8 7 6 10 10 C 1.37879 * 119.99519 * 180.02562 * 8 7 6 11 11 N 1.31517 * 119.99677 * 180.02562 * 10 8 7 12 12 Si 1.86798 * 120.00228 * 359.97438 * 10 8 7 13 13 H 1.48498 * 109.47205 * 90.00215 * 12 10 8 14 14 H 1.48503 * 109.47051 * 210.00265 * 12 10 8 15 15 H 1.48504 * 109.47193 * 330.00039 * 12 10 8 16 16 C 1.34776 * 120.00081 * 89.99627 * 6 5 4 17 17 O 1.21277 * 120.00103 * 0.02562 * 16 6 5 18 18 C 1.50706 * 120.00001 * 180.02562 * 16 6 5 19 19 H 1.09000 * 115.54592 * 29.60912 * 18 16 6 20 20 C 1.52995 * 117.51976 * 243.90254 * 18 16 6 21 21 C 1.52997 * 60.00172 * 252.52171 * 20 18 16 22 22 H 1.09000 * 117.51723 * 252.52053 * 21 20 18 23 23 C 1.52999 * 117.49992 * 107.49198 * 21 20 18 24 24 C 1.53001 * 117.49951 * 186.26056 * 23 21 20 25 25 C 1.52995 * 117.50261 * 117.59636 * 23 21 20 26 26 H 1.09002 * 109.46823 * 300.00241 * 1 2 3 27 27 H 1.09000 * 109.47162 * 59.99645 * 1 2 3 28 28 H 1.08998 * 109.47251 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47409 * 240.00239 * 2 1 3 30 30 H 1.09002 * 109.47390 * 60.00106 * 3 2 1 31 31 H 1.08997 * 109.47232 * 180.02562 * 3 2 1 32 32 H 1.09005 * 109.47032 * 299.99857 * 3 2 1 33 33 H 1.08994 * 109.47069 * 55.00154 * 4 2 1 34 34 H 1.09003 * 109.47250 * 294.99981 * 4 2 1 35 35 H 1.08998 * 109.47493 * 60.00222 * 5 4 2 36 36 H 1.09003 * 109.46953 * 300.00107 * 5 4 2 37 37 H 1.08999 * 109.47131 * 29.99893 * 7 6 5 38 38 H 1.08998 * 109.46991 * 149.99781 * 7 6 5 39 39 H 0.97004 * 119.99687 * 179.97438 * 11 10 8 40 40 H 1.09003 * 117.49798 * 0.02562 * 20 18 16 41 41 H 1.09000 * 117.49401 * 145.02722 * 20 18 16 42 42 H 1.09003 * 115.54528 * 331.92428 * 23 21 20 43 43 H 1.09003 * 117.49803 * 359.97438 * 24 23 21 44 44 H 1.08996 * 117.49964 * 145.01899 * 24 23 21 45 45 H 1.08994 * 117.50138 * 214.98100 * 25 23 21 46 46 H 1.09005 * 117.49526 * 359.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.8310 1.1879 6 7 4.0532 -1.5221 2.3838 7 6 4.4016 -0.7549 3.5823 8 6 5.8555 -0.3630 3.5227 9 1 6.4597 -0.6564 2.6770 10 6 6.4146 0.3692 4.5485 11 7 7.6834 0.7117 4.4963 12 14 5.3698 0.8761 6.0116 13 1 5.4391 -0.1758 7.0575 14 1 5.8792 2.1572 6.5635 15 1 3.9605 1.0499 5.5770 16 6 4.1818 -2.8637 2.3814 17 8 3.8938 -3.4988 1.3892 18 6 4.6836 -3.5747 3.6118 19 1 4.4538 -3.0907 4.5610 20 6 6.0147 -4.3213 3.5034 21 6 4.7029 -5.1044 3.5852 22 1 4.4855 -5.6267 4.5169 23 6 4.2118 -5.7951 2.3114 24 6 2.8314 -6.4535 2.3521 25 6 4.0930 -7.3203 2.3357 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6054 -1.7197 1.2951 34 1 1.7517 -0.1583 2.1370 35 1 3.9995 0.1675 1.1420 36 1 3.8532 -1.3939 0.3002 37 1 3.7850 0.1426 3.6311 38 1 4.2257 -1.3652 4.4681 39 1 8.0766 1.2272 5.2178 40 1 6.5280 -4.2979 2.5421 41 1 6.6607 -4.3282 4.3814 42 1 4.5198 -5.3291 1.3754 43 1 2.2732 -6.3950 3.2865 44 1 2.2313 -6.4211 1.4428 45 1 4.3224 -7.8576 1.4156 46 1 4.3651 -7.8316 3.2591 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000175992947.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:47:02 Heat of formation + Delta-G solvation = -14.461126 kcal Electronic energy + Delta-G solvation = -22738.596989 eV Core-core repulsion = 19628.873182 eV Total energy + Delta-G solvation = -3109.723807 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.24054 -38.92202 -37.59894 -36.36907 -35.87072 -34.47225 -31.08109 -29.26931 -27.99918 -26.06992 -24.62307 -24.40785 -23.36960 -22.91782 -21.26948 -20.87443 -19.54601 -19.02025 -18.12188 -17.12453 -16.51729 -16.34150 -16.11064 -15.63131 -15.53413 -14.88008 -14.70562 -14.62697 -14.33348 -14.01243 -13.66331 -13.60595 -13.39291 -13.11427 -12.91835 -12.70314 -12.51883 -12.42291 -12.23347 -12.14354 -12.10448 -12.08710 -11.80037 -11.69000 -11.58137 -11.55781 -11.41590 -10.86320 -10.79300 -10.48349 -10.09364 -9.36899 -8.28618 -6.35104 1.38924 1.40714 1.50144 1.65075 2.23360 2.34532 2.76380 3.05168 3.36640 3.56715 3.74165 3.91462 3.96402 4.01076 4.07296 4.08316 4.26165 4.34931 4.43161 4.46154 4.48321 4.56334 4.66924 4.70602 4.78687 4.82869 4.83256 4.86303 4.87515 4.92722 5.02279 5.05189 5.09211 5.12440 5.15285 5.25630 5.31513 5.33397 5.45979 5.47455 5.50237 5.58650 5.77219 6.21604 6.64157 6.72140 7.27089 7.41943 8.88002 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.009276 B = 0.007660 C = 0.004602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3017.720189 B = 3654.370613 C = 6082.670781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.091 4.091 3 C -0.148 4.148 4 C -0.114 4.114 5 C 0.118 3.882 6 N -0.596 5.596 7 C 0.220 3.780 8 C -0.533 4.533 9 H 0.026 0.974 10 C 0.020 3.980 11 N -0.943 5.943 12 Si 0.939 3.061 13 H -0.260 1.260 14 H -0.285 1.285 15 H -0.241 1.241 16 C 0.541 3.459 17 O -0.575 6.575 18 C -0.194 4.194 19 H 0.125 0.875 20 C -0.139 4.139 21 C -0.075 4.075 22 H 0.133 0.867 23 C -0.132 4.132 24 C -0.172 4.172 25 C -0.169 4.169 26 H 0.056 0.944 27 H 0.067 0.933 28 H 0.051 0.949 29 H 0.066 0.934 30 H 0.055 0.945 31 H 0.045 0.955 32 H 0.068 0.932 33 H 0.052 0.948 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.059 0.941 37 H 0.041 0.959 38 H 0.045 0.955 39 H 0.268 0.732 40 H 0.078 0.922 41 H 0.115 0.885 42 H 0.098 0.902 43 H 0.097 0.903 44 H 0.084 0.916 45 H 0.096 0.904 46 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.798 -7.058 -2.100 14.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.110 4.110 3 C -0.206 4.206 4 C -0.153 4.153 5 C -0.004 4.004 6 N -0.325 5.325 7 C 0.098 3.902 8 C -0.572 4.572 9 H 0.045 0.955 10 C -0.179 4.179 11 N -0.583 5.583 12 Si 0.761 3.239 13 H -0.185 1.185 14 H -0.211 1.211 15 H -0.164 1.164 16 C 0.331 3.669 17 O -0.458 6.458 18 C -0.214 4.214 19 H 0.143 0.857 20 C -0.177 4.177 21 C -0.093 4.093 22 H 0.151 0.849 23 C -0.150 4.150 24 C -0.209 4.209 25 C -0.206 4.206 26 H 0.075 0.925 27 H 0.086 0.914 28 H 0.071 0.929 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.065 0.935 32 H 0.087 0.913 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.091 0.909 36 H 0.078 0.922 37 H 0.059 0.941 38 H 0.063 0.937 39 H 0.077 0.923 40 H 0.096 0.904 41 H 0.133 0.867 42 H 0.116 0.884 43 H 0.116 0.884 44 H 0.103 0.897 45 H 0.115 0.885 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -12.818 -7.253 -2.528 14.943 hybrid contribution 0.495 0.801 0.530 1.080 sum -12.323 -6.452 -1.997 14.053 Atomic orbital electron populations 1.21777 0.93783 1.01778 1.02369 1.21040 0.96794 0.96296 0.96918 1.21892 1.00744 0.95599 1.02322 1.21874 0.94089 1.00271 0.99021 1.21457 0.94833 0.96892 0.87232 1.47957 1.63228 1.06009 1.15295 1.19616 0.94308 0.92153 0.84158 1.21460 0.95041 1.34569 1.06092 0.95548 1.25758 0.95902 0.95078 1.01147 1.70059 1.14108 1.39529 1.34595 0.85850 0.80323 0.78373 0.79345 1.18488 1.21113 1.16394 1.19903 0.76428 0.81938 0.88611 1.90517 1.53260 1.65721 1.36255 1.22282 1.05296 0.95643 0.98216 0.85678 1.22866 0.89954 1.01441 1.03399 1.21915 0.99053 0.89439 0.98934 0.84936 1.21866 1.01113 0.94182 0.97848 1.22822 0.90776 1.04536 1.02813 1.23066 1.01390 0.92339 1.03761 0.92474 0.91354 0.92942 0.91513 0.92547 0.93543 0.91291 0.92962 0.91927 0.90895 0.92209 0.94082 0.93684 0.92338 0.90375 0.86700 0.88371 0.88413 0.89743 0.88525 0.87442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 9.19 71.98 0.66 -2.15 16 2 C -0.09 -2.25 2.92 -10.79 -0.03 -2.28 16 3 C -0.15 -3.48 8.95 71.98 0.64 -2.84 16 4 C -0.11 -3.46 5.01 30.59 0.15 -3.31 16 5 C 0.12 4.41 5.16 86.38 0.45 4.85 16 6 N -0.60 -24.86 2.46 -826.14 -2.03 -26.89 16 7 C 0.22 9.65 4.06 85.63 0.35 10.00 16 8 C -0.53 -28.76 9.94 25.60 0.25 -28.51 16 9 H 0.03 1.65 8.06 -2.91 -0.02 1.63 16 10 C 0.02 1.07 5.47 84.65 0.46 1.54 16 11 N -0.94 -56.20 13.96 21.45 0.30 -55.90 16 12 Si 0.94 39.99 27.47 68.60 1.88 41.87 16 13 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 14 H -0.29 -12.22 7.11 99.48 0.71 -11.51 16 15 H -0.24 -9.27 6.54 99.48 0.65 -8.62 16 16 C 0.54 22.44 7.43 87.66 0.65 23.09 16 17 O -0.58 -25.05 12.69 -3.02 -0.04 -25.09 16 18 C -0.19 -7.03 5.38 -11.54 -0.06 -7.09 16 19 H 0.13 4.38 6.27 -2.39 -0.01 4.37 16 20 C -0.14 -4.72 9.96 30.59 0.30 -4.41 16 21 C -0.08 -2.24 5.85 -10.79 -0.06 -2.30 16 22 H 0.13 3.17 8.14 -2.39 -0.02 3.15 16 23 C -0.13 -4.02 4.32 -10.80 -0.05 -4.06 16 24 C -0.17 -4.48 10.26 30.62 0.31 -4.17 16 25 C -0.17 -3.91 10.25 30.62 0.31 -3.60 16 26 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.05 1.22 6.57 -2.39 -0.02 1.20 16 32 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 33 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.07 2.77 6.50 -2.39 -0.02 2.76 16 36 H 0.06 2.34 7.42 -2.39 -0.02 2.32 16 37 H 0.04 1.74 7.13 -2.39 -0.02 1.72 16 38 H 0.05 1.86 5.36 -2.39 -0.01 1.85 16 39 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 40 H 0.08 2.91 8.14 -2.39 -0.02 2.89 16 41 H 0.11 3.53 8.14 -2.39 -0.02 3.51 16 42 H 0.10 3.68 5.97 -2.39 -0.01 3.67 16 43 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 44 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 45 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 46 H 0.11 2.09 8.14 -2.38 -0.02 2.07 16 Total: -1.00 -63.69 365.18 5.34 -58.35 By element: Atomic # 1 Polarization: 32.03 SS G_CDS: 0.87 Total: 32.90 kcal Atomic # 6 Polarization: -29.59 SS G_CDS: 4.35 Total: -25.24 kcal Atomic # 7 Polarization: -81.06 SS G_CDS: -1.73 Total: -82.79 kcal Atomic # 8 Polarization: -25.05 SS G_CDS: -0.04 Total: -25.09 kcal Atomic # 14 Polarization: 39.99 SS G_CDS: 1.88 Total: 41.87 kcal Total: -63.69 5.34 -58.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175992947.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.889 kcal (2) G-P(sol) polarization free energy of solvation -63.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds