Wall clock time and date at job start Tue Mar 31 2020 01:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53009 * 109.46955 * 2 1 4 4 C 1.52998 * 109.47197 * 119.99496 * 2 1 3 5 5 C 1.52997 * 109.47222 * 174.99891 * 4 2 1 6 6 N 1.46493 * 109.47377 * 180.02562 * 5 4 2 7 7 C 1.46505 * 119.99899 * 90.00269 * 6 5 4 8 8 C 1.50703 * 109.47064 * 270.00279 * 7 6 5 9 9 H 1.07996 * 119.99751 * 359.97438 * 8 7 6 10 10 C 1.37877 * 120.00001 * 180.02562 * 8 7 6 11 11 N 1.31517 * 120.00094 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 119.99955 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47171 * 89.99544 * 12 10 8 14 14 H 1.48500 * 109.46632 * 209.99795 * 12 10 8 15 15 H 1.48494 * 109.47053 * 329.99231 * 12 10 8 16 16 C 1.34773 * 120.00646 * 270.00434 * 6 5 4 17 17 O 1.21287 * 119.99667 * 359.97438 * 16 6 5 18 18 C 1.50702 * 120.00755 * 179.97438 * 16 6 5 19 19 H 1.09005 * 115.54438 * 325.72063 * 18 16 6 20 20 C 1.52991 * 117.50041 * 111.38758 * 18 16 6 21 21 C 1.52999 * 117.49976 * 180.02562 * 18 16 6 22 22 H 1.08998 * 117.49939 * 359.97438 * 21 18 16 23 23 C 1.53005 * 117.49618 * 145.02181 * 21 18 16 24 24 C 1.52997 * 117.49407 * 248.61612 * 23 21 18 25 25 C 1.53000 * 60.00108 * 252.51035 * 24 23 21 26 26 H 1.09002 * 109.47318 * 300.00017 * 1 2 3 27 27 H 1.09000 * 109.47387 * 59.99990 * 1 2 3 28 28 H 1.09000 * 109.46977 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47318 * 239.99983 * 2 1 3 30 30 H 1.09000 * 109.46731 * 179.97438 * 3 2 1 31 31 H 1.09005 * 109.46850 * 299.99800 * 3 2 1 32 32 H 1.09002 * 109.47122 * 59.99863 * 3 2 1 33 33 H 1.09006 * 109.46906 * 55.00336 * 4 2 1 34 34 H 1.08996 * 109.47330 * 295.00728 * 4 2 1 35 35 H 1.09006 * 109.46817 * 60.00390 * 5 4 2 36 36 H 1.08996 * 109.47652 * 300.00640 * 5 4 2 37 37 H 1.09002 * 109.47068 * 30.00248 * 7 6 5 38 38 H 1.09001 * 109.47372 * 150.00336 * 7 6 5 39 39 H 0.97000 * 120.00333 * 179.97438 * 11 10 8 40 40 H 1.09001 * 117.50242 * 214.98302 * 20 18 16 41 41 H 1.09001 * 117.50394 * 359.97438 * 20 18 16 42 42 H 1.08998 * 115.54870 * 34.32703 * 23 21 18 43 43 H 1.09001 * 117.50297 * 0.02562 * 24 23 21 44 44 H 1.09008 * 117.49686 * 145.02321 * 24 23 21 45 45 H 1.08993 * 117.50051 * 252.51216 * 25 24 23 46 46 H 1.09003 * 117.49672 * 107.49084 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5648 -0.8310 1.1880 6 7 4.0531 -1.5220 2.3839 7 6 4.1931 -2.9803 2.3814 8 6 2.9065 -3.6092 2.8509 9 1 2.0687 -2.9850 3.1242 10 6 2.7996 -4.9814 2.9325 11 7 3.8201 -5.7415 2.6001 12 14 1.2046 -5.7610 3.5138 13 1 0.3212 -6.0101 2.3465 14 1 1.5015 -7.0475 4.1935 15 1 0.5234 -4.8451 4.4636 16 6 4.3736 -0.8162 3.4864 17 8 4.2582 0.3911 3.4884 18 6 4.8754 -1.5271 4.7168 19 1 4.4447 -2.5117 4.8994 20 6 6.3383 -1.3121 5.1097 21 6 5.2218 -0.6701 5.9360 22 1 5.0872 0.4080 5.8480 23 6 4.9373 -1.2607 7.3185 24 6 3.8208 -0.6188 8.1446 25 6 5.2837 -0.4037 8.5377 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 3.1300 1.4426 0.0005 31 1 1.6766 1.9564 -0.8901 32 1 1.6766 1.9564 0.8900 33 1 1.6054 -1.7197 1.2952 34 1 1.7516 -0.1582 2.1370 35 1 3.9994 0.1677 1.1421 36 1 3.8533 -1.3938 0.3003 37 1 4.4170 -3.3221 1.3708 38 1 5.0038 -3.2687 3.0504 39 1 3.7450 -6.7068 2.6578 40 1 6.8701 -2.1551 5.5511 41 1 6.9381 -0.6569 4.4780 42 1 5.0727 -2.3386 7.4062 43 1 3.2888 0.2238 7.7031 44 1 3.2213 -1.2747 8.7760 45 1 5.6466 -0.9179 9.4276 46 1 5.7144 0.5808 8.3549 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000175992966.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:47:06 Heat of formation + Delta-G solvation = -15.495008 kcal Electronic energy + Delta-G solvation = -22565.587257 eV Core-core repulsion = 19455.818617 eV Total energy + Delta-G solvation = -3109.768640 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.52197 -37.71345 -36.39608 -34.68425 -34.54212 -32.50849 -29.22228 -27.02047 -26.91201 -24.70050 -23.29165 -22.93126 -22.25070 -21.65824 -19.81704 -19.60604 -18.11567 -16.63056 -16.40343 -15.73373 -15.10345 -14.89635 -14.58811 -14.25822 -14.09227 -13.53652 -13.28338 -13.12120 -12.69230 -12.31794 -12.18716 -11.97177 -11.83493 -11.61626 -11.45851 -11.36834 -11.15974 -11.04506 -10.92755 -10.87510 -10.68917 -10.60787 -10.52412 -10.42598 -10.17282 -9.87089 -9.71235 -9.60001 -9.21247 -8.93374 -8.53873 -7.65937 -6.16777 -4.23353 3.21326 3.22475 3.30037 3.34693 3.79744 3.98553 4.33899 4.53273 4.77148 5.04313 5.15291 5.16771 5.17440 5.26544 5.27126 5.35341 5.51651 5.56786 5.60125 5.71794 5.74701 5.82230 5.93217 5.94174 6.01353 6.02016 6.07205 6.09181 6.13557 6.23771 6.24521 6.35063 6.35848 6.41847 6.52341 6.53701 6.69219 6.78689 6.81780 6.96703 7.22432 7.61312 7.78667 8.08845 8.38846 8.82667 9.08293 9.44290 10.89858 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.009623 B = 0.006813 C = 0.004746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2909.048467 B = 4108.776734 C = 5898.842222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.094 4.094 3 C -0.146 4.146 4 C -0.128 4.128 5 C 0.124 3.876 6 N -0.592 5.592 7 C 0.238 3.762 8 C -0.533 4.533 9 H 0.062 0.938 10 C 0.065 3.935 11 N -0.892 5.892 12 Si 0.892 3.108 13 H -0.280 1.280 14 H -0.285 1.285 15 H -0.273 1.273 16 C 0.546 3.454 17 O -0.578 6.578 18 C -0.165 4.165 19 H 0.138 0.862 20 C -0.150 4.150 21 C -0.099 4.099 22 H 0.111 0.889 23 C -0.118 4.118 24 C -0.177 4.177 25 C -0.179 4.179 26 H 0.051 0.949 27 H 0.048 0.952 28 H 0.055 0.945 29 H 0.067 0.933 30 H 0.056 0.944 31 H 0.046 0.954 32 H 0.052 0.948 33 H 0.078 0.922 34 H 0.059 0.941 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.034 0.966 38 H 0.040 0.960 39 H 0.264 0.736 40 H 0.100 0.900 41 H 0.093 0.907 42 H 0.106 0.894 43 H 0.094 0.906 44 H 0.092 0.908 45 H 0.091 0.909 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.696 8.348 2.408 8.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 C -0.203 4.203 4 C -0.166 4.166 5 C 0.000 4.000 6 N -0.321 5.321 7 C 0.118 3.882 8 C -0.571 4.571 9 H 0.080 0.920 10 C -0.138 4.138 11 N -0.530 5.530 12 Si 0.720 3.280 13 H -0.206 1.206 14 H -0.211 1.211 15 H -0.197 1.197 16 C 0.334 3.666 17 O -0.460 6.460 18 C -0.186 4.186 19 H 0.156 0.844 20 C -0.187 4.187 21 C -0.117 4.117 22 H 0.129 0.871 23 C -0.136 4.136 24 C -0.214 4.214 25 C -0.216 4.216 26 H 0.070 0.930 27 H 0.067 0.933 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.097 0.903 34 H 0.078 0.922 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.052 0.948 38 H 0.058 0.942 39 H 0.074 0.926 40 H 0.118 0.882 41 H 0.112 0.888 42 H 0.124 0.876 43 H 0.113 0.887 44 H 0.111 0.889 45 H 0.109 0.891 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.701 8.741 2.361 9.081 hybrid contribution -0.999 -0.859 0.221 1.336 sum -0.298 7.881 2.582 8.299 Atomic orbital electron populations 1.21812 0.95655 1.01663 1.01039 1.21073 0.95438 0.96079 0.98756 1.21876 1.01231 0.96204 1.00996 1.22010 0.96195 1.01473 0.96934 1.21328 0.94012 0.97111 0.87514 1.48138 1.62312 1.09901 1.11712 1.19449 0.97551 0.72824 0.98414 1.21522 0.99134 0.91451 1.45014 0.91973 1.24929 0.96567 0.97124 0.95158 1.69924 1.30202 1.05030 1.47874 0.86577 0.83615 0.78781 0.79036 1.20554 1.21115 1.19745 1.19505 0.76982 0.86321 0.83744 1.90566 1.57001 1.14656 1.83738 1.22347 0.99594 1.02433 0.94205 0.84444 1.22903 0.90262 1.02976 1.02573 1.21716 1.02541 0.98486 0.88996 0.87096 1.21725 1.03574 0.98191 0.90114 1.22916 0.91400 1.03593 1.03514 1.22914 0.98646 1.01518 0.98528 0.92975 0.93277 0.92629 0.91441 0.92507 0.93477 0.92838 0.90331 0.92249 0.91216 0.91440 0.94828 0.94165 0.92607 0.88198 0.88846 0.87589 0.88738 0.88937 0.89051 0.88920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 9.19 37.16 0.34 -1.57 16 2 C -0.09 -1.37 2.92 -90.62 -0.26 -1.63 16 3 C -0.15 -1.96 8.95 37.16 0.33 -1.63 16 4 C -0.13 -2.29 5.01 -26.73 -0.13 -2.42 16 5 C 0.12 2.33 5.21 -4.05 -0.02 2.31 16 6 N -0.59 -12.64 2.46 -175.06 -0.43 -13.06 16 7 C 0.24 5.62 4.85 -5.19 -0.03 5.60 16 8 C -0.53 -13.64 8.61 -34.44 -0.30 -13.94 16 9 H 0.06 1.63 7.42 -52.49 -0.39 1.24 16 10 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 11 N -0.89 -24.37 13.29 55.43 0.74 -23.63 16 12 Si 0.89 20.51 29.54 -169.99 -5.02 15.49 16 13 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 14 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 15 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 16 C 0.55 11.68 7.46 -10.99 -0.08 11.60 16 17 O -0.58 -13.23 15.84 5.55 0.09 -13.15 16 18 C -0.17 -3.14 4.52 -91.78 -0.41 -3.56 16 19 H 0.14 2.86 7.00 -51.93 -0.36 2.50 16 20 C -0.15 -2.37 9.96 -26.72 -0.27 -2.64 16 21 C -0.10 -1.61 5.36 -90.60 -0.49 -2.09 16 22 H 0.11 1.91 7.67 -51.93 -0.40 1.51 16 23 C -0.12 -1.67 5.85 -90.62 -0.53 -2.20 16 24 C -0.18 -2.31 10.25 -26.73 -0.27 -2.58 16 25 C -0.18 -2.11 10.25 -26.73 -0.27 -2.38 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.06 0.78 6.56 -51.93 -0.34 0.44 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.08 1.56 7.26 -51.93 -0.38 1.19 16 34 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 35 H 0.07 1.29 5.85 -51.93 -0.30 0.99 16 36 H 0.07 1.20 7.89 -51.93 -0.41 0.79 16 37 H 0.03 0.84 7.89 -51.93 -0.41 0.43 16 38 H 0.04 0.99 6.64 -51.93 -0.34 0.64 16 39 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 40 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 41 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 42 H 0.11 1.49 8.14 -51.93 -0.42 1.07 16 43 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 44 H 0.09 1.10 8.14 -51.92 -0.42 0.68 16 45 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 46 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 372.75 15.07 5.62 5.62 Total: -1.00 -27.89 372.75 -9.89 -37.78 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -8.39 Total: 6.48 kcal Atomic # 6 Polarization: -13.03 SS G_CDS: -2.49 Total: -15.52 kcal Atomic # 7 Polarization: -37.01 SS G_CDS: 0.31 Total: -36.70 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: 0.09 Total: -13.15 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -27.89 -9.89 -37.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175992966.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.284 kcal (2) G-P(sol) polarization free energy of solvation -27.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds