Wall clock time and date at job start Tue Mar 31 2020 01:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53009 * 109.46955 * 2 1 4 4 C 1.52998 * 109.47197 * 119.99496 * 2 1 3 5 5 C 1.52997 * 109.47222 * 174.99891 * 4 2 1 6 6 N 1.46493 * 109.47377 * 180.02562 * 5 4 2 7 7 C 1.46505 * 119.99899 * 90.00269 * 6 5 4 8 8 C 1.50703 * 109.47064 * 270.00279 * 7 6 5 9 9 H 1.07996 * 119.99751 * 359.97438 * 8 7 6 10 10 C 1.37877 * 120.00001 * 180.02562 * 8 7 6 11 11 N 1.31517 * 120.00094 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 119.99955 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47171 * 89.99544 * 12 10 8 14 14 H 1.48500 * 109.46632 * 209.99795 * 12 10 8 15 15 H 1.48494 * 109.47053 * 329.99231 * 12 10 8 16 16 C 1.34773 * 120.00646 * 270.00434 * 6 5 4 17 17 O 1.21287 * 119.99667 * 359.97438 * 16 6 5 18 18 C 1.50702 * 120.00755 * 179.97438 * 16 6 5 19 19 H 1.09005 * 115.54438 * 325.72063 * 18 16 6 20 20 C 1.52991 * 117.50041 * 111.38758 * 18 16 6 21 21 C 1.52999 * 117.49976 * 180.02562 * 18 16 6 22 22 H 1.08998 * 117.49939 * 359.97438 * 21 18 16 23 23 C 1.53005 * 117.49618 * 145.02181 * 21 18 16 24 24 C 1.52997 * 117.49407 * 248.61612 * 23 21 18 25 25 C 1.53000 * 60.00108 * 252.51035 * 24 23 21 26 26 H 1.09002 * 109.47318 * 300.00017 * 1 2 3 27 27 H 1.09000 * 109.47387 * 59.99990 * 1 2 3 28 28 H 1.09000 * 109.46977 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47318 * 239.99983 * 2 1 3 30 30 H 1.09000 * 109.46731 * 179.97438 * 3 2 1 31 31 H 1.09005 * 109.46850 * 299.99800 * 3 2 1 32 32 H 1.09002 * 109.47122 * 59.99863 * 3 2 1 33 33 H 1.09006 * 109.46906 * 55.00336 * 4 2 1 34 34 H 1.08996 * 109.47330 * 295.00728 * 4 2 1 35 35 H 1.09006 * 109.46817 * 60.00390 * 5 4 2 36 36 H 1.08996 * 109.47652 * 300.00640 * 5 4 2 37 37 H 1.09002 * 109.47068 * 30.00248 * 7 6 5 38 38 H 1.09001 * 109.47372 * 150.00336 * 7 6 5 39 39 H 0.97000 * 120.00333 * 179.97438 * 11 10 8 40 40 H 1.09001 * 117.50242 * 214.98302 * 20 18 16 41 41 H 1.09001 * 117.50394 * 359.97438 * 20 18 16 42 42 H 1.08998 * 115.54870 * 34.32703 * 23 21 18 43 43 H 1.09001 * 117.50297 * 0.02562 * 24 23 21 44 44 H 1.09008 * 117.49686 * 145.02321 * 24 23 21 45 45 H 1.08993 * 117.50051 * 252.51216 * 25 24 23 46 46 H 1.09003 * 117.49672 * 107.49084 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5648 -0.8310 1.1880 6 7 4.0531 -1.5220 2.3839 7 6 4.1931 -2.9803 2.3814 8 6 2.9065 -3.6092 2.8509 9 1 2.0687 -2.9850 3.1242 10 6 2.7996 -4.9814 2.9325 11 7 3.8201 -5.7415 2.6001 12 14 1.2046 -5.7610 3.5138 13 1 0.3212 -6.0101 2.3465 14 1 1.5015 -7.0475 4.1935 15 1 0.5234 -4.8451 4.4636 16 6 4.3736 -0.8162 3.4864 17 8 4.2582 0.3911 3.4884 18 6 4.8754 -1.5271 4.7168 19 1 4.4447 -2.5117 4.8994 20 6 6.3383 -1.3121 5.1097 21 6 5.2218 -0.6701 5.9360 22 1 5.0872 0.4080 5.8480 23 6 4.9373 -1.2607 7.3185 24 6 3.8208 -0.6188 8.1446 25 6 5.2837 -0.4037 8.5377 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 3.1300 1.4426 0.0005 31 1 1.6766 1.9564 -0.8901 32 1 1.6766 1.9564 0.8900 33 1 1.6054 -1.7197 1.2952 34 1 1.7516 -0.1582 2.1370 35 1 3.9994 0.1677 1.1421 36 1 3.8533 -1.3938 0.3003 37 1 4.4170 -3.3221 1.3708 38 1 5.0038 -3.2687 3.0504 39 1 3.7450 -6.7068 2.6578 40 1 6.8701 -2.1551 5.5511 41 1 6.9381 -0.6569 4.4780 42 1 5.0727 -2.3386 7.4062 43 1 3.2888 0.2238 7.7031 44 1 3.2213 -1.2747 8.7760 45 1 5.6466 -0.9179 9.4276 46 1 5.7144 0.5808 8.3549 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000175992966.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:47:05 Heat of formation + Delta-G solvation = -27.024768 kcal Electronic energy + Delta-G solvation = -22566.087225 eV Core-core repulsion = 19455.818617 eV Total energy + Delta-G solvation = -3110.268607 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.13118 -39.00290 -37.75566 -36.35080 -35.85764 -34.46618 -30.75786 -28.92103 -28.01085 -26.16781 -24.85550 -24.51861 -23.39246 -22.97505 -21.03763 -20.88665 -19.77220 -18.60408 -18.05687 -17.26774 -16.48145 -16.38170 -16.16665 -15.77472 -15.46766 -14.84464 -14.63438 -14.45382 -14.36437 -13.86656 -13.66346 -13.44468 -13.31906 -13.14880 -12.97951 -12.73550 -12.58992 -12.43714 -12.28795 -12.26338 -12.12359 -12.03795 -11.87470 -11.74301 -11.59413 -11.50251 -11.33351 -10.94920 -10.78605 -10.53695 -10.33023 -9.44207 -8.19644 -6.32628 1.38640 1.40965 1.49749 1.61212 2.27420 2.41454 2.67555 3.10452 3.27994 3.51441 3.80728 3.87439 3.94165 4.00298 4.08163 4.09532 4.25747 4.29965 4.38620 4.40729 4.48841 4.58431 4.65721 4.77722 4.78975 4.80997 4.81170 4.91074 4.93945 5.01678 5.04079 5.10200 5.13348 5.19287 5.20051 5.21089 5.29696 5.34417 5.39955 5.49071 5.50666 5.68797 5.88178 6.07660 6.56755 6.82628 7.30990 7.42462 8.86102 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.009623 B = 0.006813 C = 0.004746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2909.048467 B = 4108.776734 C = 5898.842222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.091 4.091 3 C -0.141 4.141 4 C -0.116 4.116 5 C 0.119 3.881 6 N -0.596 5.596 7 C 0.255 3.745 8 C -0.536 4.536 9 H 0.050 0.950 10 C 0.024 3.976 11 N -0.919 5.919 12 Si 0.949 3.051 13 H -0.275 1.275 14 H -0.279 1.279 15 H -0.273 1.273 16 C 0.541 3.459 17 O -0.597 6.597 18 C -0.194 4.194 19 H 0.116 0.884 20 C -0.130 4.130 21 C -0.082 4.082 22 H 0.101 0.899 23 C -0.140 4.140 24 C -0.184 4.184 25 C -0.153 4.153 26 H 0.047 0.953 27 H 0.073 0.927 28 H 0.048 0.952 29 H 0.077 0.923 30 H 0.050 0.950 31 H 0.072 0.928 32 H 0.043 0.957 33 H 0.054 0.946 34 H 0.037 0.963 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.019 0.981 38 H 0.030 0.970 39 H 0.267 0.733 40 H 0.119 0.881 41 H 0.098 0.902 42 H 0.106 0.894 43 H 0.085 0.915 44 H 0.103 0.897 45 H 0.114 0.886 46 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.522 8.807 2.918 9.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.110 4.110 3 C -0.199 4.199 4 C -0.155 4.155 5 C -0.003 4.003 6 N -0.325 5.325 7 C 0.134 3.866 8 C -0.575 4.575 9 H 0.068 0.932 10 C -0.176 4.176 11 N -0.558 5.558 12 Si 0.775 3.225 13 H -0.200 1.200 14 H -0.205 1.205 15 H -0.198 1.198 16 C 0.331 3.669 17 O -0.480 6.480 18 C -0.215 4.215 19 H 0.134 0.866 20 C -0.168 4.168 21 C -0.100 4.100 22 H 0.119 0.881 23 C -0.158 4.158 24 C -0.221 4.221 25 C -0.190 4.190 26 H 0.066 0.934 27 H 0.092 0.908 28 H 0.067 0.933 29 H 0.096 0.904 30 H 0.069 0.931 31 H 0.091 0.909 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.056 0.944 35 H 0.092 0.908 36 H 0.095 0.905 37 H 0.037 0.963 38 H 0.048 0.952 39 H 0.076 0.924 40 H 0.137 0.863 41 H 0.116 0.884 42 H 0.124 0.876 43 H 0.104 0.896 44 H 0.122 0.878 45 H 0.132 0.868 46 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 0.523 9.208 2.864 9.658 hybrid contribution -0.927 -0.964 0.053 1.338 sum -0.403 8.244 2.917 8.754 Atomic orbital electron populations 1.21794 0.94470 1.01602 1.02071 1.21069 0.96443 0.96468 0.97009 1.21831 1.00838 0.95392 1.01789 1.21874 0.95399 1.00181 0.98044 1.21502 0.94653 0.97172 0.86999 1.48170 1.62503 1.09105 1.12706 1.19087 0.96490 0.74059 0.96985 1.21616 0.99350 0.91662 1.44862 0.93164 1.25574 0.99270 0.97526 0.95240 1.70004 1.31752 1.05335 1.48728 0.85681 0.80233 0.77948 0.78617 1.20030 1.20468 1.19833 1.19911 0.76513 0.86230 0.84273 1.90538 1.57927 1.15354 1.84202 1.22215 1.02394 1.01996 0.94865 0.86605 1.23023 0.88759 1.03333 1.01660 1.21716 1.01576 0.97522 0.89209 0.88070 1.21724 1.05706 0.98562 0.89781 1.22992 0.92256 1.03414 1.03475 1.23009 0.97141 1.01266 0.97555 0.93374 0.90809 0.93267 0.90422 0.93076 0.90903 0.93787 0.92745 0.94431 0.90763 0.90504 0.96268 0.95150 0.92378 0.86257 0.88400 0.87578 0.89630 0.87833 0.86821 0.88234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.57 9.19 71.98 0.66 -2.91 16 2 C -0.09 -2.55 2.92 -10.79 -0.03 -2.58 16 3 C -0.14 -3.61 8.95 71.99 0.64 -2.96 16 4 C -0.12 -4.26 5.01 30.59 0.15 -4.11 16 5 C 0.12 4.58 5.21 86.38 0.45 5.02 16 6 N -0.60 -26.24 2.46 -826.15 -2.03 -28.27 16 7 C 0.25 12.43 4.85 85.63 0.42 12.85 16 8 C -0.54 -28.13 8.61 25.60 0.22 -27.91 16 9 H 0.05 2.72 7.42 -2.91 -0.02 2.70 16 10 C 0.02 1.28 5.46 84.65 0.46 1.74 16 11 N -0.92 -50.59 13.29 21.45 0.28 -50.30 16 12 Si 0.95 42.20 29.54 68.60 2.03 44.23 16 13 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 14 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 15 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 16 C 0.54 23.77 7.46 87.66 0.65 24.42 16 17 O -0.60 -27.87 15.84 -3.05 -0.05 -27.92 16 18 C -0.19 -7.54 4.52 -11.54 -0.05 -7.59 16 19 H 0.12 5.01 7.00 -2.38 -0.02 5.00 16 20 C -0.13 -4.05 9.96 30.60 0.30 -3.75 16 21 C -0.08 -2.62 5.36 -10.78 -0.06 -2.68 16 22 H 0.10 3.47 7.67 -2.39 -0.02 3.45 16 23 C -0.14 -3.79 5.85 -10.79 -0.06 -3.86 16 24 C -0.18 -4.56 10.25 30.59 0.31 -4.25 16 25 C -0.15 -3.21 10.25 30.59 0.31 -2.90 16 26 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.05 1.28 8.14 -2.39 -0.02 1.27 16 29 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.05 1.35 6.56 -2.39 -0.02 1.33 16 31 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 32 H 0.04 1.19 8.14 -2.39 -0.02 1.18 16 33 H 0.05 2.23 7.26 -2.38 -0.02 2.22 16 34 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.07 2.79 5.85 -2.38 -0.01 2.77 16 36 H 0.08 2.77 7.89 -2.39 -0.02 2.75 16 37 H 0.02 0.99 7.89 -2.39 -0.02 0.97 16 38 H 0.03 1.54 6.64 -2.39 -0.02 1.53 16 39 H 0.27 13.95 8.31 -92.71 -0.77 13.18 16 40 H 0.12 3.23 8.14 -2.39 -0.02 3.21 16 41 H 0.10 2.95 8.14 -2.39 -0.02 2.93 16 42 H 0.11 2.88 8.14 -2.39 -0.02 2.86 16 43 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 44 H 0.10 2.31 8.14 -2.38 -0.02 2.29 16 45 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 46 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -59.91 372.75 5.54 -54.37 By element: Atomic # 1 Polarization: 28.45 SS G_CDS: 0.92 Total: 29.37 kcal Atomic # 6 Polarization: -25.86 SS G_CDS: 4.39 Total: -21.47 kcal Atomic # 7 Polarization: -76.83 SS G_CDS: -1.74 Total: -78.57 kcal Atomic # 8 Polarization: -27.87 SS G_CDS: -0.05 Total: -27.92 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.23 kcal Total: -59.91 5.54 -54.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175992966.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.344 kcal (2) G-P(sol) polarization free energy of solvation -59.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds