Wall clock time and date at job start Tue Mar 31 2020 01:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46695 * 2 1 4 4 C 1.52992 * 109.47279 * 120.00234 * 2 1 3 5 5 C 1.52997 * 109.47482 * 65.00040 * 4 2 1 6 6 N 1.46505 * 109.47212 * 179.97438 * 5 4 2 7 7 C 1.46496 * 119.99619 * 89.99960 * 6 5 4 8 8 C 1.50707 * 109.47188 * 90.00204 * 7 6 5 9 9 H 1.07994 * 119.99863 * 359.97438 * 8 7 6 10 10 C 1.37875 * 119.99908 * 179.97438 * 8 7 6 11 11 N 1.31517 * 119.99785 * 179.97438 * 10 8 7 12 12 Si 1.86797 * 120.00190 * 359.97438 * 10 8 7 13 13 H 1.48503 * 109.47415 * 90.00179 * 12 10 8 14 14 H 1.48500 * 109.47043 * 209.99828 * 12 10 8 15 15 H 1.48500 * 109.47319 * 330.00133 * 12 10 8 16 16 C 1.34774 * 120.00261 * 270.00136 * 6 5 4 17 17 O 1.21270 * 120.00172 * 180.02562 * 16 6 5 18 18 C 1.50706 * 119.99638 * 359.97438 * 16 6 5 19 19 H 1.08994 * 115.55054 * 34.41517 * 18 16 6 20 20 C 1.53005 * 117.49449 * 248.74818 * 18 16 6 21 21 C 1.52997 * 117.49516 * 180.08994 * 18 16 6 22 22 H 1.09003 * 117.50008 * 359.97438 * 21 18 16 23 23 C 1.53004 * 117.49749 * 214.97899 * 21 18 16 24 24 C 1.52999 * 117.50076 * 128.61985 * 23 21 18 25 25 C 1.52998 * 60.00047 * 252.50967 * 24 23 21 26 26 H 1.09001 * 109.46924 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47104 * 299.99452 * 1 2 3 28 28 H 1.08993 * 109.47832 * 59.99829 * 1 2 3 29 29 H 1.09001 * 109.46580 * 240.00538 * 2 1 3 30 30 H 1.09007 * 109.46964 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.47224 * 300.00155 * 3 2 1 32 32 H 1.09000 * 109.47346 * 60.00132 * 3 2 1 33 33 H 1.09002 * 109.47103 * 304.99792 * 4 2 1 34 34 H 1.08998 * 109.46862 * 185.00605 * 4 2 1 35 35 H 1.09002 * 109.47153 * 59.99783 * 5 4 2 36 36 H 1.09001 * 109.46832 * 299.99974 * 5 4 2 37 37 H 1.09006 * 109.47349 * 209.99918 * 7 6 5 38 38 H 1.09003 * 109.47665 * 330.00083 * 7 6 5 39 39 H 0.96996 * 120.00048 * 180.02562 * 11 10 8 40 40 H 1.08998 * 117.49866 * 0.02562 * 20 18 16 41 41 H 1.09004 * 117.49325 * 145.02284 * 20 18 16 42 42 H 1.08996 * 115.54745 * 274.32847 * 23 21 18 43 43 H 1.08998 * 117.49714 * 0.02562 * 24 23 21 44 44 H 1.08998 * 117.49929 * 145.01513 * 24 23 21 45 45 H 1.08998 * 117.50143 * 252.50952 * 25 24 23 46 46 H 1.09002 * 117.49839 * 107.48648 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.6353 -2.1955 1.1879 6 7 2.1243 -2.8862 2.3838 7 6 1.2849 -2.9589 3.5822 8 6 0.4307 -4.1992 3.5228 9 1 0.5054 -4.8662 2.6767 10 6 -0.4460 -4.4822 4.5485 11 7 -1.1917 -5.5643 4.4964 12 14 -0.5747 -3.3288 6.0123 13 1 -1.6115 -2.3005 5.7426 14 1 -0.9495 -4.1042 7.2220 15 1 0.7347 -2.6648 6.2359 16 6 3.3463 -3.4547 2.3814 17 8 3.7508 -4.0268 3.3712 18 6 4.2095 -3.3803 1.1483 19 1 4.1192 -2.4634 0.5659 20 6 4.4623 -4.6811 0.3835 21 6 5.5853 -4.0469 1.2080 22 1 5.8663 -4.5389 2.1392 23 6 6.7292 -3.3756 0.4451 24 6 8.0257 -3.1044 1.2108 25 6 7.0987 -1.9447 0.8411 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8932 -0.5138 -0.8901 30 1 3.1300 1.4426 -0.0005 31 1 1.6765 1.9564 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6054 -0.2618 2.1369 34 1 3.1263 -0.6442 1.2950 35 1 2.0699 -2.6550 0.3001 36 1 0.5490 -2.2724 1.1420 37 1 1.9188 -2.9965 4.4682 38 1 0.6441 -2.0785 3.6311 39 1 -1.8088 -5.7632 5.2179 40 1 4.0039 -5.5905 0.7719 41 1 4.5388 -4.6198 -0.7022 42 1 6.8130 -3.6439 -0.6080 43 1 8.0639 -3.4045 2.2579 44 1 8.9629 -3.1944 0.6615 45 1 7.4259 -1.2717 0.0486 46 1 6.5268 -1.4815 1.6452 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000175992981.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:47:10 Heat of formation + Delta-G solvation = -6.632671 kcal Electronic energy + Delta-G solvation = -22582.909337 eV Core-core repulsion = 19473.524997 eV Total energy + Delta-G solvation = -3109.384340 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.70978 -37.85493 -36.78272 -34.88894 -34.38287 -32.49288 -29.41326 -27.76434 -27.09587 -24.76816 -23.37719 -23.13056 -22.44877 -21.57345 -19.90257 -19.82401 -18.21628 -16.87385 -16.72572 -15.85823 -15.44728 -15.02613 -14.75861 -14.31124 -14.13090 -13.76635 -13.52232 -13.36869 -12.80758 -12.59652 -12.36196 -12.18731 -11.94934 -11.79871 -11.66096 -11.63340 -11.37301 -11.24241 -10.95689 -10.84229 -10.81596 -10.75921 -10.59433 -10.47257 -10.41630 -10.04592 -9.93572 -9.55809 -9.50828 -8.94144 -8.57382 -7.66062 -6.06915 -4.05147 3.13058 3.27709 3.35913 3.40799 3.58982 3.90023 4.14076 4.41393 4.59348 4.82962 4.88796 4.90293 4.95028 4.99107 5.11735 5.15298 5.25792 5.34987 5.39481 5.46647 5.50328 5.57996 5.61227 5.69576 5.73829 5.78791 5.82027 5.86206 5.88573 5.99161 6.06931 6.08993 6.13846 6.15272 6.23385 6.24924 6.41412 6.46841 6.51773 6.71568 7.01188 7.40521 7.63773 8.31566 8.49639 8.95837 9.04864 9.53891 11.06585 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.011698 B = 0.006009 C = 0.004457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2392.930398 B = 4658.748621 C = 6281.002064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.093 4.093 3 C -0.145 4.145 4 C -0.134 4.134 5 C 0.112 3.888 6 N -0.588 5.588 7 C 0.216 3.784 8 C -0.526 4.526 9 H 0.074 0.926 10 C 0.072 3.928 11 N -0.898 5.898 12 Si 0.873 3.127 13 H -0.275 1.275 14 H -0.284 1.284 15 H -0.264 1.264 16 C 0.537 3.463 17 O -0.543 6.543 18 C -0.178 4.178 19 H 0.119 0.881 20 C -0.146 4.146 21 C -0.098 4.098 22 H 0.118 0.882 23 C -0.122 4.122 24 C -0.176 4.176 25 C -0.178 4.178 26 H 0.062 0.938 27 H 0.055 0.945 28 H 0.050 0.950 29 H 0.069 0.931 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.053 0.947 33 H 0.066 0.934 34 H 0.060 0.940 35 H 0.069 0.931 36 H 0.085 0.915 37 H 0.039 0.961 38 H 0.024 0.976 39 H 0.264 0.736 40 H 0.101 0.899 41 H 0.099 0.901 42 H 0.106 0.894 43 H 0.096 0.904 44 H 0.092 0.908 45 H 0.091 0.909 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.310 11.264 -12.186 20.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.112 4.112 3 C -0.203 4.203 4 C -0.173 4.173 5 C -0.012 4.012 6 N -0.318 5.318 7 C 0.096 3.904 8 C -0.564 4.564 9 H 0.092 0.908 10 C -0.130 4.130 11 N -0.537 5.537 12 Si 0.700 3.300 13 H -0.201 1.201 14 H -0.209 1.209 15 H -0.189 1.189 16 C 0.323 3.677 17 O -0.420 6.420 18 C -0.199 4.199 19 H 0.137 0.863 20 C -0.183 4.183 21 C -0.116 4.116 22 H 0.136 0.864 23 C -0.140 4.140 24 C -0.213 4.213 25 C -0.215 4.215 26 H 0.081 0.919 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.087 0.913 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.103 0.897 37 H 0.057 0.943 38 H 0.042 0.958 39 H 0.074 0.926 40 H 0.120 0.880 41 H 0.118 0.882 42 H 0.124 0.876 43 H 0.114 0.886 44 H 0.110 0.890 45 H 0.110 0.890 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 11.348 10.858 -11.524 19.481 hybrid contribution -0.376 0.579 0.742 1.014 sum 10.972 11.438 -10.782 19.169 Atomic orbital electron populations 1.21918 0.95091 1.02454 1.01437 1.21051 0.96108 0.95874 0.98182 1.21831 1.00722 0.96232 1.01504 1.22138 1.00861 0.96207 0.98112 1.21551 1.00983 0.90835 0.87862 1.47802 1.15572 1.53436 1.15023 1.19642 0.89981 0.97193 0.83599 1.21333 1.20427 1.07167 1.07521 0.90778 1.24845 0.95172 0.95168 0.97785 1.69897 1.24988 1.25507 1.33289 0.86887 0.78946 0.81245 0.82930 1.20097 1.20949 1.18874 1.19445 0.81582 0.78746 0.87885 1.90648 1.72866 1.43225 1.35291 1.22395 0.98948 0.98962 0.99639 0.86325 1.23015 1.01480 0.95726 0.98115 1.21801 0.87253 1.01709 1.00840 0.86449 1.21753 0.95255 0.98268 0.98759 1.22972 0.93817 1.03220 1.01295 1.22959 1.03756 0.91106 1.03654 0.91877 0.92629 0.93112 0.91263 0.92917 0.92969 0.92777 0.91506 0.92096 0.91249 0.89690 0.94270 0.95777 0.92610 0.88032 0.88220 0.87641 0.88598 0.88966 0.89014 0.88621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 8.95 37.16 0.33 -1.33 16 2 C -0.09 -0.99 2.92 -90.62 -0.26 -1.25 16 3 C -0.15 -1.37 9.19 37.16 0.34 -1.03 16 4 C -0.13 -1.77 4.89 -26.74 -0.13 -1.90 16 5 C 0.11 1.79 4.80 -4.04 -0.02 1.77 16 6 N -0.59 -12.27 2.46 -175.05 -0.43 -12.70 16 7 C 0.22 5.37 4.23 -5.19 -0.02 5.35 16 8 C -0.53 -15.26 9.94 -34.44 -0.34 -15.60 16 9 H 0.07 2.36 8.06 -52.49 -0.42 1.93 16 10 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 11 N -0.90 -27.91 13.96 55.43 0.77 -27.14 16 12 Si 0.87 21.79 27.47 -169.99 -4.67 17.12 16 13 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 14 H -0.28 -7.06 7.11 56.52 0.40 -6.65 16 15 H -0.26 -6.47 6.54 56.52 0.37 -6.10 16 16 C 0.54 11.22 7.46 -10.98 -0.08 11.14 16 17 O -0.54 -13.72 15.84 5.57 0.09 -13.63 16 18 C -0.18 -2.74 4.44 -91.77 -0.41 -3.15 16 19 H 0.12 1.56 6.48 -51.93 -0.34 1.23 16 20 C -0.15 -2.01 9.96 -26.69 -0.27 -2.27 16 21 C -0.10 -1.36 5.38 -90.58 -0.49 -1.85 16 22 H 0.12 1.91 7.67 -51.93 -0.40 1.51 16 23 C -0.12 -1.34 5.87 -90.62 -0.53 -1.87 16 24 C -0.18 -1.78 10.25 -26.73 -0.27 -2.06 16 25 C -0.18 -1.83 10.18 -26.73 -0.27 -2.10 16 26 H 0.06 0.74 6.56 -51.93 -0.34 0.40 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.05 0.47 8.14 -51.92 -0.42 0.05 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.06 0.78 7.45 -51.93 -0.39 0.39 16 35 H 0.07 0.98 6.64 -51.93 -0.34 0.64 16 36 H 0.08 1.44 6.50 -51.93 -0.34 1.10 16 37 H 0.04 1.06 6.48 -51.93 -0.34 0.72 16 38 H 0.02 0.56 7.50 -51.93 -0.39 0.18 16 39 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 40 H 0.10 1.58 8.14 -51.93 -0.42 1.16 16 41 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.11 1.01 8.14 -51.93 -0.42 0.58 16 43 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 45 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 46 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 370.03 15.07 5.58 5.58 Total: -1.00 -33.19 370.03 -9.56 -42.75 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -8.38 Total: 2.13 kcal Atomic # 6 Polarization: -11.59 SS G_CDS: -2.52 Total: -14.11 kcal Atomic # 7 Polarization: -40.18 SS G_CDS: 0.34 Total: -39.84 kcal Atomic # 8 Polarization: -13.72 SS G_CDS: 0.09 Total: -13.63 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.67 Total: 17.12 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.19 -9.56 -42.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175992981.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.119 kcal (2) G-P(sol) polarization free energy of solvation -33.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds