Wall clock time and date at job start Tue Mar 31 2020 01:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46695 * 2 1 4 4 C 1.52992 * 109.47279 * 120.00234 * 2 1 3 5 5 C 1.52997 * 109.47482 * 65.00040 * 4 2 1 6 6 N 1.46505 * 109.47212 * 179.97438 * 5 4 2 7 7 C 1.46496 * 119.99619 * 89.99960 * 6 5 4 8 8 C 1.50707 * 109.47188 * 90.00204 * 7 6 5 9 9 H 1.07994 * 119.99863 * 359.97438 * 8 7 6 10 10 C 1.37875 * 119.99908 * 179.97438 * 8 7 6 11 11 N 1.31517 * 119.99785 * 179.97438 * 10 8 7 12 12 Si 1.86797 * 120.00190 * 359.97438 * 10 8 7 13 13 H 1.48503 * 109.47415 * 90.00179 * 12 10 8 14 14 H 1.48500 * 109.47043 * 209.99828 * 12 10 8 15 15 H 1.48500 * 109.47319 * 330.00133 * 12 10 8 16 16 C 1.34774 * 120.00261 * 270.00136 * 6 5 4 17 17 O 1.21270 * 120.00172 * 180.02562 * 16 6 5 18 18 C 1.50706 * 119.99638 * 359.97438 * 16 6 5 19 19 H 1.08994 * 115.55054 * 34.41517 * 18 16 6 20 20 C 1.53005 * 117.49449 * 248.74818 * 18 16 6 21 21 C 1.52997 * 117.49516 * 180.08994 * 18 16 6 22 22 H 1.09003 * 117.50008 * 359.97438 * 21 18 16 23 23 C 1.53004 * 117.49749 * 214.97899 * 21 18 16 24 24 C 1.52999 * 117.50076 * 128.61985 * 23 21 18 25 25 C 1.52998 * 60.00047 * 252.50967 * 24 23 21 26 26 H 1.09001 * 109.46924 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47104 * 299.99452 * 1 2 3 28 28 H 1.08993 * 109.47832 * 59.99829 * 1 2 3 29 29 H 1.09001 * 109.46580 * 240.00538 * 2 1 3 30 30 H 1.09007 * 109.46964 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.47224 * 300.00155 * 3 2 1 32 32 H 1.09000 * 109.47346 * 60.00132 * 3 2 1 33 33 H 1.09002 * 109.47103 * 304.99792 * 4 2 1 34 34 H 1.08998 * 109.46862 * 185.00605 * 4 2 1 35 35 H 1.09002 * 109.47153 * 59.99783 * 5 4 2 36 36 H 1.09001 * 109.46832 * 299.99974 * 5 4 2 37 37 H 1.09006 * 109.47349 * 209.99918 * 7 6 5 38 38 H 1.09003 * 109.47665 * 330.00083 * 7 6 5 39 39 H 0.96996 * 120.00048 * 180.02562 * 11 10 8 40 40 H 1.08998 * 117.49866 * 0.02562 * 20 18 16 41 41 H 1.09004 * 117.49325 * 145.02284 * 20 18 16 42 42 H 1.08996 * 115.54745 * 274.32847 * 23 21 18 43 43 H 1.08998 * 117.49714 * 0.02562 * 24 23 21 44 44 H 1.08998 * 117.49929 * 145.01513 * 24 23 21 45 45 H 1.08998 * 117.50143 * 252.50952 * 25 24 23 46 46 H 1.09002 * 117.49839 * 107.48648 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.6353 -2.1955 1.1879 6 7 2.1243 -2.8862 2.3838 7 6 1.2849 -2.9589 3.5822 8 6 0.4307 -4.1992 3.5228 9 1 0.5054 -4.8662 2.6767 10 6 -0.4460 -4.4822 4.5485 11 7 -1.1917 -5.5643 4.4964 12 14 -0.5747 -3.3288 6.0123 13 1 -1.6115 -2.3005 5.7426 14 1 -0.9495 -4.1042 7.2220 15 1 0.7347 -2.6648 6.2359 16 6 3.3463 -3.4547 2.3814 17 8 3.7508 -4.0268 3.3712 18 6 4.2095 -3.3803 1.1483 19 1 4.1192 -2.4634 0.5659 20 6 4.4623 -4.6811 0.3835 21 6 5.5853 -4.0469 1.2080 22 1 5.8663 -4.5389 2.1392 23 6 6.7292 -3.3756 0.4451 24 6 8.0257 -3.1044 1.2108 25 6 7.0987 -1.9447 0.8411 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8932 -0.5138 -0.8901 30 1 3.1300 1.4426 -0.0005 31 1 1.6765 1.9564 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6054 -0.2618 2.1369 34 1 3.1263 -0.6442 1.2950 35 1 2.0699 -2.6550 0.3001 36 1 0.5490 -2.2724 1.1420 37 1 1.9188 -2.9965 4.4682 38 1 0.6441 -2.0785 3.6311 39 1 -1.8088 -5.7632 5.2179 40 1 4.0039 -5.5905 0.7719 41 1 4.5388 -4.6198 -0.7022 42 1 6.8130 -3.6439 -0.6080 43 1 8.0639 -3.4045 2.2579 44 1 8.9629 -3.1944 0.6615 45 1 7.4259 -1.2717 0.0486 46 1 6.5268 -1.4815 1.6452 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000175992981.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:47:09 Heat of formation + Delta-G solvation = -25.114121 kcal Electronic energy + Delta-G solvation = -22583.710753 eV Core-core repulsion = 19473.524997 eV Total energy + Delta-G solvation = -3110.185756 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.19546 -38.97445 -37.97104 -36.20396 -35.73449 -34.63927 -31.08112 -29.32705 -27.93178 -26.28791 -24.56681 -24.48024 -23.38382 -23.03463 -20.89345 -20.80826 -19.74663 -19.10546 -18.17344 -17.33281 -16.57759 -16.34922 -16.01649 -15.82652 -15.37908 -15.18283 -14.74819 -14.64996 -14.37699 -13.94230 -13.68343 -13.57209 -13.39415 -13.12418 -12.94835 -12.70073 -12.52339 -12.47620 -12.27587 -12.18460 -12.13649 -11.87457 -11.81079 -11.75886 -11.60505 -11.48687 -11.38753 -10.95047 -10.85109 -10.69463 -10.48764 -9.41390 -8.37014 -6.41821 1.27663 1.32292 1.43101 1.61285 2.18998 2.28012 2.74396 2.96698 3.08160 3.51485 3.75769 3.82563 3.95085 3.98012 4.07979 4.15911 4.19468 4.26137 4.31983 4.38911 4.54852 4.55673 4.66712 4.74076 4.78531 4.84262 4.86784 4.88279 4.90138 4.98509 5.01491 5.06864 5.10752 5.18133 5.21094 5.23189 5.32469 5.37942 5.38961 5.43736 5.53117 5.58329 5.65124 6.21425 6.58805 6.68935 7.18653 7.40063 8.80075 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.011698 B = 0.006009 C = 0.004457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2392.930398 B = 4658.748621 C = 6281.002064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.087 4.087 3 C -0.143 4.143 4 C -0.124 4.124 5 C 0.108 3.892 6 N -0.595 5.595 7 C 0.227 3.773 8 C -0.535 4.535 9 H 0.028 0.972 10 C 0.014 3.986 11 N -0.944 5.944 12 Si 0.945 3.055 13 H -0.249 1.249 14 H -0.279 1.279 15 H -0.259 1.259 16 C 0.524 3.476 17 O -0.601 6.601 18 C -0.181 4.181 19 H 0.151 0.849 20 C -0.135 4.135 21 C -0.092 4.092 22 H 0.083 0.917 23 C -0.123 4.123 24 C -0.178 4.178 25 C -0.172 4.172 26 H 0.048 0.952 27 H 0.046 0.954 28 H 0.067 0.933 29 H 0.086 0.914 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.047 0.953 33 H 0.051 0.949 34 H 0.069 0.931 35 H 0.093 0.907 36 H 0.071 0.929 37 H 0.015 0.985 38 H 0.044 0.956 39 H 0.269 0.731 40 H 0.073 0.927 41 H 0.143 0.857 42 H 0.133 0.867 43 H 0.078 0.922 44 H 0.116 0.884 45 H 0.118 0.882 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.561 13.982 -14.302 23.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.106 4.106 3 C -0.200 4.200 4 C -0.163 4.163 5 C -0.014 4.014 6 N -0.324 5.324 7 C 0.104 3.896 8 C -0.573 4.573 9 H 0.047 0.953 10 C -0.185 4.185 11 N -0.584 5.584 12 Si 0.767 3.233 13 H -0.173 1.173 14 H -0.205 1.205 15 H -0.184 1.184 16 C 0.314 3.686 17 O -0.483 6.483 18 C -0.201 4.201 19 H 0.169 0.831 20 C -0.172 4.172 21 C -0.111 4.111 22 H 0.102 0.898 23 C -0.140 4.140 24 C -0.215 4.215 25 C -0.209 4.209 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.086 0.914 29 H 0.104 0.896 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.088 0.912 35 H 0.111 0.889 36 H 0.090 0.910 37 H 0.033 0.967 38 H 0.062 0.938 39 H 0.078 0.922 40 H 0.092 0.908 41 H 0.161 0.839 42 H 0.150 0.850 43 H 0.097 0.903 44 H 0.134 0.866 45 H 0.136 0.864 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 12.591 13.607 -13.691 23.046 hybrid contribution -0.776 -0.377 1.374 1.622 sum 11.815 13.230 -12.316 21.595 Atomic orbital electron populations 1.21935 0.95569 1.01667 1.01917 1.21031 0.95644 0.96687 0.97202 1.21804 1.01230 0.95049 1.01933 1.22047 1.01322 0.93876 0.99050 1.21831 1.00354 0.92628 0.86624 1.47923 1.15335 1.53790 1.15308 1.19271 0.89590 0.95822 0.84901 1.21522 1.21387 1.08113 1.06303 0.95350 1.25812 0.94559 0.96989 1.01095 1.70044 1.25984 1.27646 1.34694 0.85757 0.79695 0.79348 0.78477 1.17331 1.20472 1.18373 1.20474 0.81828 0.77292 0.89053 1.90607 1.74173 1.45618 1.37860 1.22327 0.98919 1.01160 0.97715 0.83106 1.23131 1.00387 0.93499 1.00197 1.21778 0.87987 1.01236 1.00117 0.89829 1.21762 0.94083 0.98651 0.99541 1.23052 0.94630 1.03145 1.00696 1.23009 1.03124 0.90989 1.03754 0.93293 0.93488 0.91353 0.89588 0.92111 0.91531 0.93421 0.93033 0.91209 0.88870 0.91017 0.96655 0.93772 0.92213 0.90835 0.83940 0.84954 0.90315 0.86621 0.86420 0.90340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.07 8.95 71.98 0.64 -2.43 16 2 C -0.09 -1.59 2.92 -10.80 -0.03 -1.62 16 3 C -0.14 -2.21 9.19 71.98 0.66 -1.54 16 4 C -0.12 -3.04 4.89 30.59 0.15 -2.89 16 5 C 0.11 3.37 4.80 86.38 0.41 3.79 16 6 N -0.59 -25.36 2.46 -826.14 -2.03 -27.39 16 7 C 0.23 11.58 4.23 85.64 0.36 11.94 16 8 C -0.53 -32.47 9.94 25.60 0.25 -32.22 16 9 H 0.03 1.92 8.06 -2.91 -0.02 1.90 16 10 C 0.01 0.82 5.47 84.65 0.46 1.28 16 11 N -0.94 -60.66 13.96 21.45 0.30 -60.36 16 12 Si 0.94 45.64 27.47 68.60 1.88 47.52 16 13 H -0.25 -10.97 7.11 99.48 0.71 -10.27 16 14 H -0.28 -13.23 7.11 99.48 0.71 -12.53 16 15 H -0.26 -12.26 6.54 99.48 0.65 -11.61 16 16 C 0.52 22.59 7.46 87.66 0.65 23.24 16 17 O -0.60 -32.19 15.84 -3.00 -0.05 -32.24 16 18 C -0.18 -5.37 4.44 -11.54 -0.05 -5.42 16 19 H 0.15 3.48 6.48 -2.39 -0.02 3.46 16 20 C -0.13 -3.53 9.96 30.62 0.30 -3.23 16 21 C -0.09 -2.52 5.38 -10.77 -0.06 -2.58 16 22 H 0.08 2.86 7.67 -2.39 -0.02 2.84 16 23 C -0.12 -2.32 5.87 -10.79 -0.06 -2.39 16 24 C -0.18 -3.22 10.25 30.59 0.31 -2.91 16 25 C -0.17 -3.01 10.18 30.59 0.31 -2.69 16 26 H 0.05 1.10 6.56 -2.39 -0.02 1.09 16 27 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 31 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 32 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.07 1.60 7.45 -2.39 -0.02 1.58 16 35 H 0.09 2.45 6.64 -2.39 -0.02 2.44 16 36 H 0.07 2.44 6.50 -2.39 -0.02 2.42 16 37 H 0.02 0.86 6.48 -2.38 -0.02 0.84 16 38 H 0.04 2.07 7.50 -2.39 -0.02 2.05 16 39 H 0.27 16.02 8.31 -92.71 -0.77 15.25 16 40 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 41 H 0.14 2.53 8.14 -2.38 -0.02 2.51 16 42 H 0.13 1.87 8.14 -2.39 -0.02 1.85 16 43 H 0.08 1.68 8.14 -2.39 -0.02 1.67 16 44 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 45 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 46 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -77.70 370.03 5.30 -72.39 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: 0.87 Total: 19.73 kcal Atomic # 6 Polarization: -23.99 SS G_CDS: 4.33 Total: -19.66 kcal Atomic # 7 Polarization: -86.02 SS G_CDS: -1.73 Total: -87.75 kcal Atomic # 8 Polarization: -32.19 SS G_CDS: -0.05 Total: -32.24 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 1.88 Total: 47.52 kcal Total: -77.70 5.30 -72.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175992981.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.281 kcal (2) G-P(sol) polarization free energy of solvation -77.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds