Wall clock time and date at job start Tue Mar 31 2020 01:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46847 * 2 1 4 4 C 1.52997 * 109.47090 * 119.99636 * 2 1 3 5 5 C 1.53005 * 109.46791 * 65.00494 * 4 2 1 6 6 N 1.46496 * 109.46942 * 179.97438 * 5 4 2 7 7 C 1.46497 * 120.00129 * 269.99599 * 6 5 4 8 8 C 1.50709 * 109.47273 * 270.00327 * 7 6 5 9 9 H 1.07999 * 119.99476 * 359.97438 * 8 7 6 10 10 C 1.37873 * 120.00210 * 179.97438 * 8 7 6 11 11 N 1.31517 * 119.99914 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 120.00074 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.46996 * 90.00193 * 12 10 8 14 14 H 1.48502 * 109.46931 * 210.00078 * 12 10 8 15 15 H 1.48498 * 109.47167 * 330.00145 * 12 10 8 16 16 C 1.34777 * 120.00345 * 90.00092 * 6 5 4 17 17 O 1.21283 * 120.00463 * 179.97438 * 16 6 5 18 18 C 1.50700 * 119.99675 * 359.72090 * 16 6 5 19 19 H 1.09000 * 115.55056 * 325.94110 * 18 16 6 20 20 C 1.53002 * 117.50158 * 111.65860 * 18 16 6 21 21 C 1.52998 * 60.00121 * 107.49017 * 20 18 16 22 22 H 1.08997 * 117.49966 * 107.49314 * 21 20 18 23 23 C 1.53008 * 117.49527 * 252.51473 * 21 20 18 24 24 C 1.52999 * 117.49708 * 197.24633 * 23 21 20 25 25 C 1.52995 * 117.49846 * 128.62569 * 23 21 20 26 26 H 1.09002 * 109.47058 * 60.00037 * 1 2 3 27 27 H 1.08997 * 109.46986 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47302 * 300.00300 * 1 2 3 29 29 H 1.08994 * 109.47043 * 240.00439 * 2 1 3 30 30 H 1.09001 * 109.47125 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.47262 * 299.99838 * 3 2 1 32 32 H 1.09000 * 109.47362 * 60.00513 * 3 2 1 33 33 H 1.08998 * 109.47437 * 305.00656 * 4 2 1 34 34 H 1.08997 * 109.47195 * 184.99765 * 4 2 1 35 35 H 1.08995 * 109.47592 * 59.99458 * 5 4 2 36 36 H 1.09002 * 109.47093 * 299.99765 * 5 4 2 37 37 H 1.09000 * 109.46889 * 29.99981 * 7 6 5 38 38 H 1.09001 * 109.47460 * 150.00590 * 7 6 5 39 39 H 0.97000 * 120.00447 * 179.97438 * 11 10 8 40 40 H 1.08997 * 117.49663 * 214.97926 * 20 18 16 41 41 H 1.09000 * 117.49678 * 359.97438 * 20 18 16 42 42 H 1.08999 * 115.54912 * 342.95011 * 23 21 20 43 43 H 1.09009 * 117.49780 * 359.97438 * 24 23 21 44 44 H 1.08998 * 117.50067 * 145.01542 * 24 23 21 45 45 H 1.08997 * 117.49643 * 214.97616 * 25 23 21 46 46 H 1.09007 * 117.50119 * 359.97055 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6353 -2.1954 1.1879 6 7 2.1241 -2.8861 2.3838 7 6 3.4523 -3.5041 2.3813 8 6 3.3415 -4.9313 1.9100 9 1 2.3780 -5.3374 1.6398 10 6 4.4702 -5.7184 1.8237 11 7 5.6435 -5.2240 2.1532 12 14 4.3327 -7.4876 1.2402 13 1 4.4889 -7.5355 -0.2358 14 1 5.3977 -8.3031 1.8774 15 1 3.0024 -8.0305 1.6151 16 6 1.3519 -2.9531 3.4864 17 8 1.7563 -3.5253 4.4763 18 6 -0.0120 -2.3121 3.4911 19 1 -0.1027 -1.3956 2.9081 20 6 -1.2281 -3.2389 3.5450 21 6 -0.8376 -2.4171 4.7750 22 1 -1.4717 -1.5699 5.0363 23 6 -0.2152 -3.1650 5.9558 24 6 -0.1956 -2.4546 7.3107 25 6 1.1018 -2.6264 6.5181 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8933 -0.5137 -0.8900 30 1 3.1300 1.4426 0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 1.6053 -0.2617 2.1370 34 1 3.1263 -0.6443 1.2952 35 1 2.0698 -2.6549 0.3002 36 1 0.5489 -2.2724 1.1420 37 1 4.1095 -2.9501 1.7110 38 1 3.8636 -3.4858 3.3906 39 1 6.4375 -5.7778 2.0929 40 1 -2.1191 -2.9324 2.9971 41 1 -1.0417 -4.3124 3.5766 42 1 -0.3580 -4.2456 5.9558 43 1 -0.6257 -1.4542 7.3608 44 1 -0.3256 -3.0678 8.2024 45 1 1.8253 -3.3526 6.8884 46 1 1.5252 -1.7394 6.0466 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000175992995.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:47:13 Heat of formation + Delta-G solvation = 0.056216 kcal Electronic energy + Delta-G solvation = -22949.387318 eV Core-core repulsion = 19840.293030 eV Total energy + Delta-G solvation = -3109.094288 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.73126 -37.49208 -36.43524 -34.65981 -34.30935 -32.52541 -29.04618 -27.27789 -27.15383 -24.49013 -23.28210 -23.19458 -22.09634 -21.54651 -19.94008 -19.85142 -17.80369 -16.64761 -16.35158 -15.55691 -15.11654 -14.97202 -14.50912 -14.39450 -14.02724 -13.74311 -13.37173 -13.17707 -12.84419 -12.43354 -12.21762 -12.16621 -11.88553 -11.71748 -11.26719 -11.19468 -11.09330 -10.96572 -10.86863 -10.80320 -10.65444 -10.59049 -10.57464 -10.42196 -10.32387 -10.06023 -9.66000 -9.46070 -9.35959 -8.40604 -8.32889 -7.50775 -6.01170 -4.05452 3.28499 3.31137 3.37805 3.42363 3.91009 4.11064 4.38940 4.46788 4.86112 4.94031 5.00759 5.03351 5.12255 5.17440 5.31294 5.34877 5.43630 5.53482 5.57739 5.60330 5.65653 5.72406 5.78316 5.81607 5.85485 5.88832 5.91021 5.96657 5.97450 6.13307 6.19459 6.24371 6.29481 6.35992 6.48053 6.48501 6.59146 6.64758 6.74885 7.15186 7.50163 7.64968 7.96496 8.28450 8.55244 8.95616 9.25144 9.59963 11.06657 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.009768 B = 0.007130 C = 0.004719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2865.781828 B = 3926.280676 C = 5931.752490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.096 4.096 3 C -0.145 4.145 4 C -0.133 4.133 5 C 0.113 3.887 6 N -0.596 5.596 7 C 0.249 3.751 8 C -0.522 4.522 9 H 0.056 0.944 10 C 0.061 3.939 11 N -0.896 5.896 12 Si 0.896 3.104 13 H -0.281 1.281 14 H -0.286 1.286 15 H -0.275 1.275 16 C 0.531 3.469 17 O -0.523 6.523 18 C -0.183 4.183 19 H 0.115 0.885 20 C -0.151 4.151 21 C -0.093 4.093 22 H 0.105 0.895 23 C -0.106 4.106 24 C -0.208 4.208 25 C -0.111 4.111 26 H 0.050 0.950 27 H 0.058 0.942 28 H 0.052 0.948 29 H 0.072 0.928 30 H 0.054 0.946 31 H 0.050 0.950 32 H 0.051 0.949 33 H 0.059 0.941 34 H 0.067 0.933 35 H 0.078 0.922 36 H 0.067 0.933 37 H 0.029 0.971 38 H 0.042 0.958 39 H 0.262 0.738 40 H 0.097 0.903 41 H 0.099 0.901 42 H 0.099 0.901 43 H 0.083 0.917 44 H 0.084 0.916 45 H 0.091 0.909 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.545 11.136 -0.627 16.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.115 4.115 3 C -0.203 4.203 4 C -0.172 4.172 5 C -0.011 4.011 6 N -0.327 5.327 7 C 0.129 3.871 8 C -0.561 4.561 9 H 0.074 0.926 10 C -0.141 4.141 11 N -0.535 5.535 12 Si 0.723 3.277 13 H -0.207 1.207 14 H -0.211 1.211 15 H -0.200 1.200 16 C 0.317 3.683 17 O -0.400 6.400 18 C -0.205 4.205 19 H 0.132 0.868 20 C -0.188 4.188 21 C -0.112 4.112 22 H 0.123 0.877 23 C -0.124 4.124 24 C -0.245 4.245 25 C -0.148 4.148 26 H 0.069 0.931 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.090 0.910 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.096 0.904 36 H 0.085 0.915 37 H 0.047 0.953 38 H 0.060 0.940 39 H 0.072 0.928 40 H 0.116 0.884 41 H 0.117 0.883 42 H 0.117 0.883 43 H 0.102 0.898 44 H 0.103 0.897 45 H 0.109 0.891 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -12.091 10.762 -0.088 16.187 hybrid contribution 0.049 -0.920 -0.620 1.110 sum -12.042 9.842 -0.707 15.568 Atomic orbital electron populations 1.21907 0.95553 1.01888 1.01275 1.21074 0.95613 0.96023 0.98749 1.21827 1.01105 0.96114 1.01242 1.22119 1.01858 0.95965 0.97208 1.21480 0.98833 0.91149 0.89666 1.48166 1.19249 1.53800 1.11480 1.19213 0.77137 0.92177 0.98525 1.21446 0.93688 0.96847 1.44123 0.92589 1.24922 0.95209 0.98487 0.95486 1.69933 0.98392 1.36724 1.48437 0.86537 0.77823 0.84702 0.78597 1.20691 1.21133 1.19960 1.19367 0.84935 0.80579 0.83374 1.90693 1.73429 1.43385 1.32457 1.22435 0.92494 1.02171 1.03380 0.86756 1.22952 0.96564 0.98325 1.01009 1.21729 1.00561 1.00676 0.88225 0.87660 1.21397 1.02088 0.97864 0.91019 1.23254 1.05117 1.01096 0.95052 1.22487 0.90038 1.02080 1.00177 0.93082 0.92272 0.92927 0.90983 0.92669 0.93046 0.92948 0.92272 0.91389 0.90391 0.91464 0.95314 0.93989 0.92811 0.88429 0.88271 0.88251 0.89840 0.89714 0.89052 0.89937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 8.95 37.16 0.33 -1.12 16 2 C -0.10 -1.07 2.92 -90.62 -0.26 -1.33 16 3 C -0.15 -1.47 9.19 37.16 0.34 -1.13 16 4 C -0.13 -1.85 4.89 -26.73 -0.13 -1.98 16 5 C 0.11 1.85 4.79 -4.04 -0.02 1.83 16 6 N -0.60 -12.54 2.46 -175.06 -0.43 -12.97 16 7 C 0.25 6.49 5.16 -5.19 -0.03 6.46 16 8 C -0.52 -14.84 9.39 -34.44 -0.32 -15.16 16 9 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 10 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 11 N -0.90 -26.75 13.29 55.43 0.74 -26.01 16 12 Si 0.90 22.04 29.54 -169.99 -5.02 17.02 16 13 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 14 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 15 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 16 C 0.53 10.87 7.29 -10.98 -0.08 10.78 16 17 O -0.52 -12.38 11.11 5.55 0.06 -12.32 16 18 C -0.18 -2.82 4.79 -91.77 -0.44 -3.26 16 19 H 0.11 1.52 6.46 -51.93 -0.34 1.18 16 20 C -0.15 -2.06 9.95 -26.73 -0.27 -2.32 16 21 C -0.09 -1.31 5.87 -90.62 -0.53 -1.84 16 22 H 0.11 1.24 8.14 -51.93 -0.42 0.82 16 23 C -0.11 -1.67 4.48 -90.62 -0.41 -2.08 16 24 C -0.21 -2.85 10.25 -26.73 -0.27 -3.12 16 25 C -0.11 -1.88 7.08 -26.74 -0.19 -2.07 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.58 6.57 -51.93 -0.34 0.24 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.81 7.43 -51.93 -0.39 0.42 16 34 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 36 H 0.07 0.96 5.07 -51.93 -0.26 0.70 16 37 H 0.03 0.77 8.07 -51.93 -0.42 0.35 16 38 H 0.04 1.24 7.42 -51.93 -0.39 0.85 16 39 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 40 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 42 H 0.10 1.69 8.14 -51.93 -0.42 1.27 16 43 H 0.08 1.02 8.14 -51.92 -0.42 0.60 16 44 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 45 H 0.09 1.69 8.06 -51.93 -0.42 1.27 16 46 H 0.08 1.46 7.96 -51.92 -0.41 1.05 16 LS Contribution 365.26 15.07 5.50 5.50 Total: -1.00 -31.03 365.26 -9.95 -40.97 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -8.42 Total: 2.48 kcal Atomic # 6 Polarization: -12.30 SS G_CDS: -2.37 Total: -14.67 kcal Atomic # 7 Polarization: -39.29 SS G_CDS: 0.31 Total: -38.98 kcal Atomic # 8 Polarization: -12.38 SS G_CDS: 0.06 Total: -12.32 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.03 -9.95 -40.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175992995.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.027 kcal (2) G-P(sol) polarization free energy of solvation -31.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds