Wall clock time and date at job start Tue Mar 31 2020 01:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46847 * 2 1 4 4 C 1.52997 * 109.47090 * 119.99636 * 2 1 3 5 5 C 1.53005 * 109.46791 * 65.00494 * 4 2 1 6 6 N 1.46496 * 109.46942 * 179.97438 * 5 4 2 7 7 C 1.46497 * 120.00129 * 269.99599 * 6 5 4 8 8 C 1.50709 * 109.47273 * 270.00327 * 7 6 5 9 9 H 1.07999 * 119.99476 * 359.97438 * 8 7 6 10 10 C 1.37873 * 120.00210 * 179.97438 * 8 7 6 11 11 N 1.31517 * 119.99914 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 120.00074 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.46996 * 90.00193 * 12 10 8 14 14 H 1.48502 * 109.46931 * 210.00078 * 12 10 8 15 15 H 1.48498 * 109.47167 * 330.00145 * 12 10 8 16 16 C 1.34777 * 120.00345 * 90.00092 * 6 5 4 17 17 O 1.21283 * 120.00463 * 179.97438 * 16 6 5 18 18 C 1.50700 * 119.99675 * 359.72090 * 16 6 5 19 19 H 1.09000 * 115.55056 * 325.94110 * 18 16 6 20 20 C 1.53002 * 117.50158 * 111.65860 * 18 16 6 21 21 C 1.52998 * 60.00121 * 107.49017 * 20 18 16 22 22 H 1.08997 * 117.49966 * 107.49314 * 21 20 18 23 23 C 1.53008 * 117.49527 * 252.51473 * 21 20 18 24 24 C 1.52999 * 117.49708 * 197.24633 * 23 21 20 25 25 C 1.52995 * 117.49846 * 128.62569 * 23 21 20 26 26 H 1.09002 * 109.47058 * 60.00037 * 1 2 3 27 27 H 1.08997 * 109.46986 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47302 * 300.00300 * 1 2 3 29 29 H 1.08994 * 109.47043 * 240.00439 * 2 1 3 30 30 H 1.09001 * 109.47125 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.47262 * 299.99838 * 3 2 1 32 32 H 1.09000 * 109.47362 * 60.00513 * 3 2 1 33 33 H 1.08998 * 109.47437 * 305.00656 * 4 2 1 34 34 H 1.08997 * 109.47195 * 184.99765 * 4 2 1 35 35 H 1.08995 * 109.47592 * 59.99458 * 5 4 2 36 36 H 1.09002 * 109.47093 * 299.99765 * 5 4 2 37 37 H 1.09000 * 109.46889 * 29.99981 * 7 6 5 38 38 H 1.09001 * 109.47460 * 150.00590 * 7 6 5 39 39 H 0.97000 * 120.00447 * 179.97438 * 11 10 8 40 40 H 1.08997 * 117.49663 * 214.97926 * 20 18 16 41 41 H 1.09000 * 117.49678 * 359.97438 * 20 18 16 42 42 H 1.08999 * 115.54912 * 342.95011 * 23 21 20 43 43 H 1.09009 * 117.49780 * 359.97438 * 24 23 21 44 44 H 1.08998 * 117.50067 * 145.01542 * 24 23 21 45 45 H 1.08997 * 117.49643 * 214.97616 * 25 23 21 46 46 H 1.09007 * 117.50119 * 359.97055 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6353 -2.1954 1.1879 6 7 2.1241 -2.8861 2.3838 7 6 3.4523 -3.5041 2.3813 8 6 3.3415 -4.9313 1.9100 9 1 2.3780 -5.3374 1.6398 10 6 4.4702 -5.7184 1.8237 11 7 5.6435 -5.2240 2.1532 12 14 4.3327 -7.4876 1.2402 13 1 4.4889 -7.5355 -0.2358 14 1 5.3977 -8.3031 1.8774 15 1 3.0024 -8.0305 1.6151 16 6 1.3519 -2.9531 3.4864 17 8 1.7563 -3.5253 4.4763 18 6 -0.0120 -2.3121 3.4911 19 1 -0.1027 -1.3956 2.9081 20 6 -1.2281 -3.2389 3.5450 21 6 -0.8376 -2.4171 4.7750 22 1 -1.4717 -1.5699 5.0363 23 6 -0.2152 -3.1650 5.9558 24 6 -0.1956 -2.4546 7.3107 25 6 1.1018 -2.6264 6.5181 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8933 -0.5137 -0.8900 30 1 3.1300 1.4426 0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 1.6053 -0.2617 2.1370 34 1 3.1263 -0.6443 1.2952 35 1 2.0698 -2.6549 0.3002 36 1 0.5489 -2.2724 1.1420 37 1 4.1095 -2.9501 1.7110 38 1 3.8636 -3.4858 3.3906 39 1 6.4375 -5.7778 2.0929 40 1 -2.1191 -2.9324 2.9971 41 1 -1.0417 -4.3124 3.5766 42 1 -0.3580 -4.2456 5.9558 43 1 -0.6257 -1.4542 7.3608 44 1 -0.3256 -3.0678 8.2024 45 1 1.8253 -3.3526 6.8884 46 1 1.5252 -1.7394 6.0466 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000175992995.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:47:13 Heat of formation + Delta-G solvation = -15.716943 kcal Electronic energy + Delta-G solvation = -22950.071293 eV Core-core repulsion = 19840.293030 eV Total energy + Delta-G solvation = -3109.778263 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.18641 -38.79026 -37.67431 -35.99009 -35.84923 -34.58231 -30.60274 -29.02609 -27.92420 -26.18286 -24.66992 -24.49575 -23.49946 -22.89002 -21.24372 -20.81926 -19.29995 -18.60881 -18.02223 -17.10839 -16.51066 -16.19213 -16.09968 -15.76124 -15.37156 -15.08528 -14.52090 -14.45253 -14.29044 -14.04341 -13.66390 -13.32172 -13.20146 -13.02427 -12.84420 -12.71520 -12.55497 -12.35783 -12.28284 -12.18627 -12.12067 -11.91336 -11.82422 -11.70390 -11.54905 -11.45776 -11.38116 -10.81273 -10.65495 -10.61256 -9.84733 -9.26975 -8.22580 -6.37775 1.33226 1.36229 1.46492 1.82673 2.29720 2.46803 2.82512 3.05840 3.19072 3.64414 3.85977 3.93456 3.99876 4.03203 4.10004 4.17718 4.31009 4.35208 4.37934 4.50717 4.60780 4.62720 4.72758 4.82665 4.85674 4.87611 4.90447 4.95304 4.98621 5.09892 5.11701 5.18408 5.19306 5.21137 5.27159 5.31070 5.37051 5.38767 5.43525 5.53583 5.55662 5.62020 5.92547 6.08030 6.70996 6.91556 7.29267 7.64881 8.83776 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.009768 B = 0.007130 C = 0.004719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2865.781828 B = 3926.280676 C = 5931.752490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.092 4.092 3 C -0.144 4.144 4 C -0.123 4.123 5 C 0.113 3.887 6 N -0.605 5.605 7 C 0.268 3.732 8 C -0.538 4.538 9 H 0.050 0.950 10 C 0.007 3.993 11 N -0.929 5.929 12 Si 0.966 3.034 13 H -0.263 1.263 14 H -0.281 1.281 15 H -0.274 1.274 16 C 0.517 3.483 17 O -0.567 6.567 18 C -0.191 4.191 19 H 0.145 0.855 20 C -0.136 4.136 21 C -0.085 4.085 22 H 0.145 0.855 23 C -0.118 4.118 24 C -0.168 4.168 25 C -0.138 4.138 26 H 0.065 0.935 27 H 0.058 0.942 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.043 0.957 31 H 0.067 0.933 32 H 0.057 0.943 33 H 0.066 0.934 34 H 0.040 0.960 35 H 0.062 0.938 36 H 0.098 0.902 37 H 0.014 0.986 38 H -0.005 1.005 39 H 0.266 0.734 40 H 0.142 0.858 41 H 0.073 0.927 42 H 0.077 0.923 43 H 0.112 0.888 44 H 0.096 0.904 45 H 0.058 0.942 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.950 12.260 -1.580 20.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.111 4.111 3 C -0.201 4.201 4 C -0.161 4.161 5 C -0.010 4.010 6 N -0.335 5.335 7 C 0.146 3.854 8 C -0.577 4.577 9 H 0.068 0.932 10 C -0.192 4.192 11 N -0.569 5.569 12 Si 0.790 3.210 13 H -0.188 1.188 14 H -0.206 1.206 15 H -0.198 1.198 16 C 0.307 3.693 17 O -0.446 6.446 18 C -0.212 4.212 19 H 0.163 0.837 20 C -0.173 4.173 21 C -0.103 4.103 22 H 0.162 0.838 23 C -0.136 4.136 24 C -0.205 4.205 25 C -0.175 4.175 26 H 0.084 0.916 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.062 0.938 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.059 0.941 35 H 0.080 0.920 36 H 0.116 0.884 37 H 0.032 0.968 38 H 0.013 0.987 39 H 0.075 0.925 40 H 0.160 0.840 41 H 0.092 0.908 42 H 0.095 0.905 43 H 0.130 0.870 44 H 0.115 0.885 45 H 0.077 0.923 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -15.523 11.913 -1.067 19.596 hybrid contribution 1.170 -1.276 -0.274 1.753 sum -14.353 10.636 -1.341 17.915 Atomic orbital electron populations 1.21890 0.93639 1.02274 1.02542 1.21050 0.97168 0.96203 0.96675 1.21811 1.00486 0.95456 1.02369 1.22014 1.00262 0.94596 0.99264 1.21706 1.00305 0.91949 0.87042 1.48181 1.17620 1.54135 1.13584 1.18590 0.79865 0.91866 0.95052 1.21695 0.93574 0.98037 1.44371 0.93151 1.25850 0.94755 1.03145 0.95406 1.70058 0.99170 1.38519 1.49183 0.85445 0.77725 0.78890 0.78937 1.18772 1.20593 1.19837 1.20382 0.86695 0.80019 0.82247 1.90691 1.74756 1.45282 1.33898 1.22349 0.89495 1.03473 1.05846 0.83747 1.23086 0.96645 0.96717 1.00847 1.21923 0.99895 1.01572 0.86949 0.83765 1.21463 1.01164 0.97378 0.93635 1.23304 1.00854 1.02227 0.94124 1.22252 0.90900 1.01263 1.03118 0.91617 0.92274 0.91929 0.91521 0.93762 0.91350 0.92355 0.91550 0.94137 0.91978 0.88407 0.96844 0.98677 0.92483 0.84025 0.90792 0.90450 0.87014 0.88532 0.92333 0.91300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 8.95 71.98 0.64 -1.68 16 2 C -0.09 -1.89 2.92 -10.79 -0.03 -1.92 16 3 C -0.14 -2.63 9.19 71.98 0.66 -1.97 16 4 C -0.12 -3.37 4.89 30.59 0.15 -3.22 16 5 C 0.11 3.68 4.79 86.38 0.41 4.10 16 6 N -0.60 -26.49 2.46 -826.15 -2.03 -28.52 16 7 C 0.27 14.95 5.16 85.64 0.44 15.39 16 8 C -0.54 -31.93 9.39 25.60 0.24 -31.69 16 9 H 0.05 2.97 7.81 -2.91 -0.02 2.95 16 10 C 0.01 0.42 5.46 84.65 0.46 0.88 16 11 N -0.93 -57.65 13.29 21.45 0.28 -57.36 16 12 Si 0.97 46.03 29.54 68.60 2.03 48.06 16 13 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 14 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 15 H -0.27 -12.89 7.11 99.48 0.71 -12.18 16 16 C 0.52 21.77 7.29 87.66 0.64 22.41 16 17 O -0.57 -28.57 11.11 -3.04 -0.03 -28.61 16 18 C -0.19 -5.45 4.79 -11.54 -0.06 -5.51 16 19 H 0.14 3.25 6.46 -2.39 -0.02 3.24 16 20 C -0.14 -3.26 9.95 30.59 0.30 -2.96 16 21 C -0.09 -2.13 5.87 -10.79 -0.06 -2.19 16 22 H 0.14 2.57 8.14 -2.39 -0.02 2.55 16 23 C -0.12 -3.67 4.48 -10.79 -0.05 -3.72 16 24 C -0.17 -4.28 10.25 30.59 0.31 -3.97 16 25 C -0.14 -4.87 7.08 30.59 0.22 -4.66 16 26 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.06 0.94 6.57 -2.39 -0.02 0.93 16 28 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 29 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.07 1.72 7.43 -2.39 -0.02 1.71 16 34 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.06 2.21 8.07 -2.39 -0.02 2.19 16 36 H 0.10 2.60 5.07 -2.39 -0.01 2.58 16 37 H 0.01 0.78 8.07 -2.39 -0.02 0.76 16 38 H 0.00 -0.31 7.42 -2.39 -0.02 -0.33 16 39 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 40 H 0.14 2.22 8.14 -2.39 -0.02 2.20 16 41 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 42 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 43 H 0.11 2.26 8.14 -2.38 -0.02 2.24 16 44 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 45 H 0.06 2.39 8.06 -2.39 -0.02 2.37 16 46 H 0.07 2.57 7.96 -2.38 -0.02 2.55 16 Total: -1.00 -73.14 365.26 5.46 -67.68 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: 0.92 Total: 19.45 kcal Atomic # 6 Polarization: -24.99 SS G_CDS: 4.29 Total: -20.70 kcal Atomic # 7 Polarization: -84.13 SS G_CDS: -1.74 Total: -85.88 kcal Atomic # 8 Polarization: -28.57 SS G_CDS: -0.03 Total: -28.61 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.06 kcal Total: -73.14 5.46 -67.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175992995.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.962 kcal (2) G-P(sol) polarization free energy of solvation -73.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds