Wall clock time and date at job start Tue Mar 31 2020 01:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47008 * 2 1 4 4 C 1.53004 * 109.46889 * 239.99953 * 2 1 3 5 5 C 1.52997 * 109.47077 * 120.00291 * 2 1 3 6 6 N 1.46498 * 109.47238 * 65.09174 * 5 2 1 7 7 C 1.46503 * 119.99482 * 86.23614 * 6 5 2 8 8 C 1.50704 * 109.46789 * 89.99969 * 7 6 5 9 9 H 1.07997 * 120.00540 * 359.97438 * 8 7 6 10 10 C 1.37879 * 119.99738 * 179.97438 * 8 7 6 11 11 N 1.31516 * 120.00421 * 0.02562 * 10 8 7 12 12 Si 1.86804 * 119.99952 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47493 * 89.99720 * 12 10 8 14 14 H 1.48500 * 109.47091 * 210.00351 * 12 10 8 15 15 H 1.48502 * 109.46757 * 329.99894 * 12 10 8 16 16 C 1.34766 * 120.00181 * 266.23611 * 6 5 2 17 17 O 1.21284 * 120.00015 * 185.04854 * 16 6 5 18 18 C 1.50694 * 120.00330 * 5.04766 * 16 6 5 19 19 H 1.09001 * 115.54933 * 347.66523 * 18 16 6 20 20 C 1.53006 * 117.50244 * 201.99011 * 18 16 6 21 21 C 1.52995 * 59.99965 * 252.51169 * 20 18 16 22 22 H 1.09004 * 117.49956 * 252.50578 * 21 20 18 23 23 C 1.53001 * 117.49896 * 107.49442 * 21 20 18 24 24 C 1.52998 * 117.50117 * 185.83095 * 23 21 20 25 25 C 1.52998 * 60.00021 * 252.50509 * 24 23 21 26 26 H 1.09005 * 109.47101 * 298.07733 * 1 2 3 27 27 H 1.09001 * 109.47155 * 58.07339 * 1 2 3 28 28 H 1.09001 * 109.47072 * 178.07291 * 1 2 3 29 29 H 1.08997 * 109.47059 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.47339 * 299.99980 * 3 2 1 31 31 H 1.09001 * 109.47234 * 59.99994 * 3 2 1 32 32 H 1.08999 * 109.47171 * 299.99981 * 4 2 1 33 33 H 1.09004 * 109.47108 * 60.00234 * 4 2 1 34 34 H 1.08997 * 109.46890 * 179.97438 * 4 2 1 35 35 H 1.09007 * 109.46635 * 305.09743 * 5 2 1 36 36 H 1.09003 * 109.47017 * 185.09897 * 5 2 1 37 37 H 1.08994 * 109.47035 * 209.99755 * 7 6 5 38 38 H 1.09002 * 109.47387 * 330.00461 * 7 6 5 39 39 H 0.96998 * 120.00223 * 179.97438 * 11 10 8 40 40 H 1.08994 * 117.49375 * 0.02562 * 20 18 16 41 41 H 1.08998 * 117.49448 * 144.99418 * 20 18 16 42 42 H 1.09000 * 115.54609 * 331.52989 * 23 21 20 43 43 H 1.09007 * 117.49919 * 359.97438 * 24 23 21 44 44 H 1.08998 * 117.50224 * 145.01480 * 24 23 21 45 45 H 1.08992 * 117.49728 * 252.50979 * 25 24 23 46 46 H 1.09003 * 117.49700 * 107.48420 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0400 -0.7213 1.2492 6 7 1.6544 -2.1333 1.1894 7 6 2.5070 -3.0964 0.4881 8 6 3.5123 -3.6723 1.4519 9 1 3.5161 -3.3526 2.4835 10 6 4.4273 -4.6073 1.0166 11 7 4.4232 -4.9963 -0.2397 12 14 5.6730 -5.3217 2.2114 13 1 5.1068 -6.5375 2.8489 14 1 6.9137 -5.6794 1.4779 15 1 5.9889 -4.3159 3.2572 16 6 0.5153 -2.5464 1.7795 17 8 0.2417 -3.7275 1.8096 18 6 -0.4184 -1.5406 2.4021 19 1 -0.0142 -0.5356 2.5226 20 6 -1.3883 -2.0451 3.4725 21 6 -1.9094 -1.6694 2.0840 22 1 -2.4864 -0.7489 1.9950 23 6 -2.3384 -2.8095 1.1581 24 6 -2.7296 -2.4461 -0.2756 25 6 -3.8065 -2.8577 0.7302 26 1 -0.3633 0.4837 0.9068 27 1 -0.3633 0.5435 -0.8722 28 1 -0.3633 -1.0271 -0.0346 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6766 -1.7489 -1.2493 33 1 1.6767 -0.2074 -2.1393 34 1 3.1300 -0.7209 -1.2495 35 1 1.6040 -0.2629 2.1368 36 1 3.1262 -0.6429 1.2960 37 1 1.8911 -3.8991 0.0827 38 1 3.0302 -2.5936 -0.3253 39 1 5.0672 -5.6539 -0.5459 40 1 -1.3507 -3.1043 3.7267 41 1 -1.6220 -1.3718 4.2973 42 1 -1.8285 -3.7599 1.3154 43 1 -2.6818 -1.3946 -0.5593 44 1 -2.4770 -3.1574 -1.0620 45 1 -4.2624 -3.8399 0.6056 46 1 -4.4668 -2.0772 1.1082 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177339603.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:47:17 Heat of formation + Delta-G solvation = 4.833050 kcal Electronic energy + Delta-G solvation = -23680.886496 eV Core-core repulsion = 20571.999347 eV Total energy + Delta-G solvation = -3108.887149 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.99380 -37.81249 -36.70659 -34.81971 -33.67979 -32.29511 -28.24346 -27.10439 -26.74466 -25.55457 -24.28941 -23.39968 -22.21920 -21.61417 -20.16146 -19.04979 -17.58006 -16.74788 -16.45804 -15.63668 -15.21348 -14.72970 -14.44982 -14.21568 -13.91627 -13.61238 -13.36509 -13.12833 -12.62408 -12.37645 -12.26586 -11.91883 -11.60276 -11.51467 -11.32307 -11.27498 -11.24968 -11.10188 -10.98086 -10.93813 -10.80287 -10.58462 -10.40947 -10.30163 -10.14103 -10.04038 -9.78110 -9.49151 -9.27088 -8.72962 -8.37498 -7.51752 -5.99709 -4.03365 3.15222 3.33507 3.39528 3.42130 3.90063 3.99721 4.43870 4.48879 4.68789 4.95152 5.04427 5.07736 5.12536 5.14767 5.33777 5.36110 5.43901 5.44199 5.49729 5.52578 5.73515 5.75364 5.77720 5.83322 5.92287 5.99351 6.00501 6.04345 6.14771 6.17652 6.24909 6.26959 6.33819 6.36913 6.42251 6.47954 6.67763 6.68677 6.81433 7.17931 7.49568 7.64789 7.97540 8.30581 8.53826 8.96796 9.21815 9.61414 11.07996 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.015095 B = 0.006343 C = 0.005298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.481274 B = 4413.282258 C = 5284.034707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.087 4.087 3 C -0.137 4.137 4 C -0.141 4.141 5 C 0.121 3.879 6 N -0.589 5.589 7 C 0.243 3.757 8 C -0.522 4.522 9 H 0.055 0.945 10 C 0.061 3.939 11 N -0.896 5.896 12 Si 0.895 3.105 13 H -0.280 1.280 14 H -0.286 1.286 15 H -0.275 1.275 16 C 0.539 3.461 17 O -0.541 6.541 18 C -0.184 4.184 19 H 0.118 0.882 20 C -0.150 4.150 21 C -0.090 4.090 22 H 0.104 0.896 23 C -0.124 4.124 24 C -0.177 4.177 25 C -0.181 4.181 26 H 0.050 0.950 27 H 0.046 0.954 28 H 0.066 0.934 29 H 0.056 0.944 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.069 0.931 33 H 0.043 0.957 34 H 0.057 0.943 35 H 0.066 0.934 36 H 0.079 0.921 37 H 0.038 0.962 38 H 0.043 0.957 39 H 0.262 0.738 40 H 0.105 0.895 41 H 0.096 0.904 42 H 0.128 0.872 43 H 0.091 0.909 44 H 0.092 0.908 45 H 0.090 0.910 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.199 12.541 1.243 16.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.088 4.088 3 C -0.195 4.195 4 C -0.198 4.198 5 C -0.003 4.003 6 N -0.318 5.318 7 C 0.124 3.876 8 C -0.561 4.561 9 H 0.074 0.926 10 C -0.141 4.141 11 N -0.536 5.536 12 Si 0.723 3.277 13 H -0.206 1.206 14 H -0.212 1.212 15 H -0.200 1.200 16 C 0.326 3.674 17 O -0.419 6.419 18 C -0.206 4.206 19 H 0.136 0.864 20 C -0.188 4.188 21 C -0.108 4.108 22 H 0.122 0.878 23 C -0.142 4.142 24 C -0.214 4.214 25 C -0.218 4.218 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.085 0.915 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.088 0.912 33 H 0.062 0.938 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.097 0.903 37 H 0.056 0.944 38 H 0.061 0.939 39 H 0.072 0.928 40 H 0.123 0.877 41 H 0.115 0.885 42 H 0.146 0.854 43 H 0.109 0.891 44 H 0.110 0.890 45 H 0.109 0.891 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -11.204 11.775 1.108 16.292 hybrid contribution 0.899 -0.259 0.589 1.105 sum -10.306 11.516 1.697 15.547 Atomic orbital electron populations 1.22069 0.94790 1.02551 1.00538 1.20996 0.95884 0.95033 0.96906 1.21808 1.01116 0.95375 1.01188 1.21997 1.01156 1.01222 0.95456 1.21547 1.00769 0.82041 0.95981 1.48032 1.21993 1.08261 1.53552 1.19425 0.88799 0.87300 0.92083 1.21475 1.14856 1.23451 0.96342 0.92625 1.24912 0.97666 0.96294 0.95219 1.69928 1.36789 1.32080 1.14754 0.86545 0.80586 0.79560 0.80995 1.20642 1.21226 1.19993 1.19230 0.81409 0.88044 0.78692 1.90606 1.74658 1.17663 1.59003 1.22633 0.91921 1.00780 1.05225 0.86410 1.23022 1.01283 1.02972 0.91482 1.21638 0.93411 0.98662 0.97114 0.87779 1.22009 0.96878 1.00439 0.94895 1.22878 1.03637 1.01821 0.93060 1.22896 0.91869 1.02450 1.04619 0.93114 0.93521 0.91459 0.92539 0.92879 0.93028 0.91188 0.93835 0.92414 0.91614 0.90293 0.94360 0.93920 0.92843 0.87671 0.88547 0.85404 0.89099 0.88983 0.89116 0.89281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 6.75 37.16 0.25 -1.60 16 2 C -0.09 -1.22 0.85 -154.51 -0.13 -1.35 16 3 C -0.14 -1.56 8.47 37.16 0.31 -1.24 16 4 C -0.14 -2.25 7.02 37.16 0.26 -1.99 16 5 C 0.12 2.00 4.55 -4.04 -0.02 1.98 16 6 N -0.59 -12.26 1.98 -175.06 -0.35 -12.61 16 7 C 0.24 6.24 3.87 -5.19 -0.02 6.22 16 8 C -0.52 -14.87 9.39 -34.44 -0.32 -15.19 16 9 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 10 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 11 N -0.90 -26.66 13.29 55.43 0.74 -25.93 16 12 Si 0.90 22.12 29.54 -169.99 -5.02 17.10 16 13 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 14 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 15 H -0.27 -6.65 7.11 56.52 0.40 -6.24 16 16 C 0.54 11.09 5.91 -10.99 -0.06 11.02 16 17 O -0.54 -13.34 13.76 5.55 0.08 -13.26 16 18 C -0.18 -2.81 3.41 -91.77 -0.31 -3.13 16 19 H 0.12 1.56 4.69 -51.93 -0.24 1.32 16 20 C -0.15 -2.06 9.77 -26.73 -0.26 -2.32 16 21 C -0.09 -1.19 5.18 -90.62 -0.47 -1.66 16 22 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 23 C -0.12 -1.83 4.99 -90.62 -0.45 -2.29 16 24 C -0.18 -2.34 9.68 -26.73 -0.26 -2.59 16 25 C -0.18 -2.17 10.25 -26.73 -0.27 -2.45 16 26 H 0.05 0.58 6.58 -51.93 -0.34 0.24 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.07 1.02 5.26 -51.93 -0.27 0.74 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.07 1.32 5.87 -51.93 -0.30 1.01 16 33 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.96 7.77 -51.93 -0.40 0.56 16 35 H 0.07 0.94 5.87 -51.93 -0.30 0.64 16 36 H 0.08 1.38 8.10 -51.93 -0.42 0.96 16 37 H 0.04 1.12 7.50 -51.93 -0.39 0.74 16 38 H 0.04 1.10 5.57 -51.93 -0.29 0.81 16 39 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 40 H 0.10 1.66 7.84 -51.93 -0.41 1.25 16 41 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.13 2.36 6.11 -51.93 -0.32 2.05 16 43 H 0.09 1.09 8.14 -51.92 -0.42 0.67 16 44 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 45 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 46 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 352.28 15.07 5.31 5.31 Total: -1.00 -31.38 352.28 -8.99 -40.37 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -7.89 Total: 3.95 kcal Atomic # 6 Polarization: -13.08 SS G_CDS: -1.86 Total: -14.94 kcal Atomic # 7 Polarization: -38.92 SS G_CDS: 0.39 Total: -38.53 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: 0.08 Total: -13.26 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.38 -8.99 -40.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177339603.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.202 kcal (2) G-P(sol) polarization free energy of solvation -31.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds