Wall clock time and date at job start Tue Mar 31 2020 01:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47008 * 2 1 4 4 C 1.53004 * 109.46889 * 239.99953 * 2 1 3 5 5 C 1.52997 * 109.47077 * 120.00291 * 2 1 3 6 6 N 1.46498 * 109.47238 * 65.09174 * 5 2 1 7 7 C 1.46503 * 119.99482 * 86.23614 * 6 5 2 8 8 C 1.50704 * 109.46789 * 89.99969 * 7 6 5 9 9 H 1.07997 * 120.00540 * 359.97438 * 8 7 6 10 10 C 1.37879 * 119.99738 * 179.97438 * 8 7 6 11 11 N 1.31516 * 120.00421 * 0.02562 * 10 8 7 12 12 Si 1.86804 * 119.99952 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47493 * 89.99720 * 12 10 8 14 14 H 1.48500 * 109.47091 * 210.00351 * 12 10 8 15 15 H 1.48502 * 109.46757 * 329.99894 * 12 10 8 16 16 C 1.34766 * 120.00181 * 266.23611 * 6 5 2 17 17 O 1.21284 * 120.00015 * 185.04854 * 16 6 5 18 18 C 1.50694 * 120.00330 * 5.04766 * 16 6 5 19 19 H 1.09001 * 115.54933 * 347.66523 * 18 16 6 20 20 C 1.53006 * 117.50244 * 201.99011 * 18 16 6 21 21 C 1.52995 * 59.99965 * 252.51169 * 20 18 16 22 22 H 1.09004 * 117.49956 * 252.50578 * 21 20 18 23 23 C 1.53001 * 117.49896 * 107.49442 * 21 20 18 24 24 C 1.52998 * 117.50117 * 185.83095 * 23 21 20 25 25 C 1.52998 * 60.00021 * 252.50509 * 24 23 21 26 26 H 1.09005 * 109.47101 * 298.07733 * 1 2 3 27 27 H 1.09001 * 109.47155 * 58.07339 * 1 2 3 28 28 H 1.09001 * 109.47072 * 178.07291 * 1 2 3 29 29 H 1.08997 * 109.47059 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.47339 * 299.99980 * 3 2 1 31 31 H 1.09001 * 109.47234 * 59.99994 * 3 2 1 32 32 H 1.08999 * 109.47171 * 299.99981 * 4 2 1 33 33 H 1.09004 * 109.47108 * 60.00234 * 4 2 1 34 34 H 1.08997 * 109.46890 * 179.97438 * 4 2 1 35 35 H 1.09007 * 109.46635 * 305.09743 * 5 2 1 36 36 H 1.09003 * 109.47017 * 185.09897 * 5 2 1 37 37 H 1.08994 * 109.47035 * 209.99755 * 7 6 5 38 38 H 1.09002 * 109.47387 * 330.00461 * 7 6 5 39 39 H 0.96998 * 120.00223 * 179.97438 * 11 10 8 40 40 H 1.08994 * 117.49375 * 0.02562 * 20 18 16 41 41 H 1.08998 * 117.49448 * 144.99418 * 20 18 16 42 42 H 1.09000 * 115.54609 * 331.52989 * 23 21 20 43 43 H 1.09007 * 117.49919 * 359.97438 * 24 23 21 44 44 H 1.08998 * 117.50224 * 145.01480 * 24 23 21 45 45 H 1.08992 * 117.49728 * 252.50979 * 25 24 23 46 46 H 1.09003 * 117.49700 * 107.48420 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0400 -0.7213 1.2492 6 7 1.6544 -2.1333 1.1894 7 6 2.5070 -3.0964 0.4881 8 6 3.5123 -3.6723 1.4519 9 1 3.5161 -3.3526 2.4835 10 6 4.4273 -4.6073 1.0166 11 7 4.4232 -4.9963 -0.2397 12 14 5.6730 -5.3217 2.2114 13 1 5.1068 -6.5375 2.8489 14 1 6.9137 -5.6794 1.4779 15 1 5.9889 -4.3159 3.2572 16 6 0.5153 -2.5464 1.7795 17 8 0.2417 -3.7275 1.8096 18 6 -0.4184 -1.5406 2.4021 19 1 -0.0142 -0.5356 2.5226 20 6 -1.3883 -2.0451 3.4725 21 6 -1.9094 -1.6694 2.0840 22 1 -2.4864 -0.7489 1.9950 23 6 -2.3384 -2.8095 1.1581 24 6 -2.7296 -2.4461 -0.2756 25 6 -3.8065 -2.8577 0.7302 26 1 -0.3633 0.4837 0.9068 27 1 -0.3633 0.5435 -0.8722 28 1 -0.3633 -1.0271 -0.0346 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6766 -1.7489 -1.2493 33 1 1.6767 -0.2074 -2.1393 34 1 3.1300 -0.7209 -1.2495 35 1 1.6040 -0.2629 2.1368 36 1 3.1262 -0.6429 1.2960 37 1 1.8911 -3.8991 0.0827 38 1 3.0302 -2.5936 -0.3253 39 1 5.0672 -5.6539 -0.5459 40 1 -1.3507 -3.1043 3.7267 41 1 -1.6220 -1.3718 4.2973 42 1 -1.8285 -3.7599 1.3154 43 1 -2.6818 -1.3946 -0.5593 44 1 -2.4770 -3.1574 -1.0620 45 1 -4.2624 -3.8399 0.6056 46 1 -4.4668 -2.0772 1.1082 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177339603.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:47:16 Heat of formation + Delta-G solvation = -12.279966 kcal Electronic energy + Delta-G solvation = -23681.628572 eV Core-core repulsion = 20571.999347 eV Total energy + Delta-G solvation = -3109.629225 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.42382 -39.03048 -38.09255 -36.05720 -35.42767 -34.26312 -30.10409 -28.15163 -28.07799 -26.96586 -25.93910 -24.60935 -23.46804 -23.02444 -21.35194 -20.31652 -19.03513 -18.61236 -18.08303 -17.09852 -16.65507 -16.43623 -15.90181 -15.53290 -15.10939 -14.87770 -14.71945 -14.44252 -14.31827 -13.99649 -13.53389 -13.24917 -13.15349 -12.95252 -12.68038 -12.65377 -12.57107 -12.45145 -12.34379 -12.25099 -12.13554 -12.10152 -11.93734 -11.64422 -11.57335 -11.44125 -11.29979 -10.90105 -10.62530 -10.45707 -10.27526 -9.27299 -8.21422 -6.36013 1.32899 1.36174 1.45708 1.74340 2.31119 2.48674 2.75719 3.06788 3.33358 3.55975 3.76852 3.89375 3.94186 3.98082 4.04745 4.17732 4.29764 4.38773 4.42989 4.44391 4.58363 4.64774 4.79012 4.80127 4.86344 4.90558 4.96900 4.99395 5.01716 5.04866 5.13920 5.15746 5.19394 5.25697 5.28608 5.29983 5.30076 5.41365 5.50463 5.54899 5.58308 5.65811 5.93850 6.11123 6.72441 6.91561 7.30036 7.62057 8.84457 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.015095 B = 0.006343 C = 0.005298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.481274 B = 4413.282258 C = 5284.034707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.081 4.081 3 C -0.130 4.130 4 C -0.138 4.138 5 C 0.115 3.885 6 N -0.593 5.593 7 C 0.265 3.735 8 C -0.541 4.541 9 H 0.048 0.952 10 C 0.007 3.993 11 N -0.929 5.929 12 Si 0.964 3.036 13 H -0.282 1.282 14 H -0.273 1.273 15 H -0.262 1.262 16 C 0.529 3.471 17 O -0.598 6.598 18 C -0.192 4.192 19 H 0.149 0.851 20 C -0.146 4.146 21 C -0.067 4.067 22 H 0.148 0.852 23 C -0.154 4.154 24 C -0.179 4.179 25 C -0.154 4.154 26 H 0.077 0.923 27 H 0.063 0.937 28 H 0.039 0.961 29 H 0.050 0.950 30 H 0.067 0.933 31 H 0.075 0.925 32 H 0.028 0.972 33 H 0.064 0.936 34 H 0.040 0.960 35 H 0.098 0.902 36 H 0.063 0.937 37 H -0.015 1.015 38 H 0.037 0.963 39 H 0.266 0.734 40 H 0.072 0.928 41 H 0.138 0.862 42 H 0.077 0.923 43 H 0.111 0.889 44 H 0.071 0.929 45 H 0.090 0.910 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.548 16.137 2.711 20.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.082 4.082 3 C -0.188 4.188 4 C -0.195 4.195 5 C -0.008 4.008 6 N -0.322 5.322 7 C 0.144 3.856 8 C -0.580 4.580 9 H 0.066 0.934 10 C -0.191 4.191 11 N -0.569 5.569 12 Si 0.788 3.212 13 H -0.208 1.208 14 H -0.198 1.198 15 H -0.187 1.187 16 C 0.319 3.681 17 O -0.480 6.480 18 C -0.213 4.213 19 H 0.167 0.833 20 C -0.183 4.183 21 C -0.085 4.085 22 H 0.165 0.835 23 C -0.172 4.172 24 C -0.215 4.215 25 C -0.191 4.191 26 H 0.096 0.904 27 H 0.082 0.918 28 H 0.058 0.942 29 H 0.069 0.931 30 H 0.086 0.914 31 H 0.094 0.906 32 H 0.047 0.953 33 H 0.083 0.917 34 H 0.059 0.941 35 H 0.116 0.884 36 H 0.081 0.919 37 H 0.003 0.997 38 H 0.054 0.946 39 H 0.075 0.925 40 H 0.091 0.909 41 H 0.156 0.844 42 H 0.095 0.905 43 H 0.130 0.870 44 H 0.090 0.910 45 H 0.108 0.892 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -12.554 15.418 2.580 20.050 hybrid contribution 1.298 -1.464 0.061 1.958 sum -11.256 13.954 2.641 18.121 Atomic orbital electron populations 1.22028 0.93335 1.01428 1.02709 1.20962 0.97025 0.96210 0.94002 1.21754 1.00838 0.93056 1.03132 1.21936 1.00024 0.99501 0.98077 1.21855 1.00303 0.79725 0.98875 1.47989 1.21742 1.09417 1.53052 1.18796 0.87931 0.87007 0.91872 1.21772 1.15745 1.24152 0.96307 0.93400 1.25823 0.99723 0.96536 0.97039 1.70051 1.37669 1.32570 1.16575 0.85478 0.78192 0.78609 0.78913 1.20834 1.19808 1.18665 1.20230 0.81542 0.88522 0.77796 1.90583 1.75781 1.20574 1.61036 1.22547 0.91935 1.00174 1.06596 0.83348 1.23136 1.00209 1.02101 0.92899 1.21796 0.91562 0.99267 0.95858 0.83483 1.21867 0.99173 0.99370 0.96794 1.22903 1.04255 1.02485 0.91906 1.22994 0.90510 1.03400 1.02186 0.90438 0.91796 0.94188 0.93088 0.91379 0.90610 0.95267 0.91664 0.94100 0.88400 0.91868 0.99709 0.94552 0.92525 0.90908 0.84382 0.90501 0.87048 0.90986 0.89187 0.86142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 6.75 71.98 0.49 -2.66 16 2 C -0.08 -2.13 0.85 -52.18 -0.04 -2.17 16 3 C -0.13 -2.49 8.47 71.98 0.61 -1.88 16 4 C -0.14 -4.51 7.02 71.98 0.51 -4.01 16 5 C 0.12 3.72 4.55 86.38 0.39 4.11 16 6 N -0.59 -25.83 1.98 -826.16 -1.64 -27.47 16 7 C 0.27 14.71 3.87 85.63 0.33 15.04 16 8 C -0.54 -32.40 9.39 25.60 0.24 -32.16 16 9 H 0.05 2.86 7.81 -2.91 -0.02 2.84 16 10 C 0.01 0.44 5.46 84.65 0.46 0.90 16 11 N -0.93 -57.77 13.29 21.45 0.28 -57.49 16 12 Si 0.96 46.48 29.54 68.60 2.03 48.50 16 13 H -0.28 -13.65 7.11 99.48 0.71 -12.94 16 14 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 15 H -0.26 -12.04 7.11 99.48 0.71 -11.33 16 16 C 0.53 22.65 5.91 87.66 0.52 23.17 16 17 O -0.60 -31.96 13.76 -3.04 -0.04 -32.00 16 18 C -0.19 -5.50 3.41 -11.54 -0.04 -5.54 16 19 H 0.15 3.27 4.69 -2.39 -0.01 3.26 16 20 C -0.15 -3.70 9.77 30.59 0.30 -3.40 16 21 C -0.07 -1.58 5.18 -10.80 -0.06 -1.64 16 22 H 0.15 2.34 8.14 -2.38 -0.02 2.32 16 23 C -0.15 -4.53 4.99 -10.79 -0.05 -4.59 16 24 C -0.18 -4.60 9.68 30.59 0.30 -4.30 16 25 C -0.15 -3.40 10.25 30.59 0.31 -3.08 16 26 H 0.08 1.35 6.58 -2.38 -0.02 1.34 16 27 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.04 1.15 5.26 -2.39 -0.01 1.14 16 29 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 31 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.03 1.17 5.87 -2.39 -0.01 1.15 16 33 H 0.06 1.79 8.14 -2.38 -0.02 1.77 16 34 H 0.04 1.42 7.77 -2.39 -0.02 1.41 16 35 H 0.10 2.51 5.87 -2.38 -0.01 2.50 16 36 H 0.06 2.22 8.10 -2.39 -0.02 2.20 16 37 H -0.02 -0.99 7.50 -2.39 -0.02 -1.01 16 38 H 0.04 2.03 5.57 -2.39 -0.01 2.02 16 39 H 0.27 15.51 8.31 -92.71 -0.77 14.73 16 40 H 0.07 2.34 7.84 -2.39 -0.02 2.33 16 41 H 0.14 2.36 8.14 -2.39 -0.02 2.34 16 42 H 0.08 3.11 6.11 -2.39 -0.01 3.09 16 43 H 0.11 2.39 8.14 -2.38 -0.02 2.37 16 44 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 45 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 46 H 0.12 1.94 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -76.34 352.28 5.84 -70.50 By element: Atomic # 1 Polarization: 19.22 SS G_CDS: 0.94 Total: 20.16 kcal Atomic # 6 Polarization: -26.47 SS G_CDS: 4.26 Total: -22.20 kcal Atomic # 7 Polarization: -83.61 SS G_CDS: -1.35 Total: -84.96 kcal Atomic # 8 Polarization: -31.96 SS G_CDS: -0.04 Total: -32.00 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 2.03 Total: 48.50 kcal Total: -76.34 5.84 -70.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177339603.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.224 kcal (2) G-P(sol) polarization free energy of solvation -76.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds