Wall clock time and date at job start Tue Mar 31 2020 01:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47189 * 2 1 4 4 C 1.52995 * 109.47269 * 239.99797 * 2 1 3 5 5 C 1.53008 * 109.47044 * 119.99970 * 2 1 3 6 6 N 1.46504 * 109.46792 * 57.17528 * 5 2 1 7 7 C 1.46501 * 119.99619 * 87.18382 * 6 5 2 8 8 C 1.50696 * 109.47125 * 95.76139 * 7 6 5 9 9 H 1.08002 * 120.00064 * 4.75958 * 8 7 6 10 10 C 1.37882 * 119.99983 * 184.75907 * 8 7 6 11 11 N 1.31515 * 119.99781 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 120.00009 * 180.02562 * 10 8 7 13 13 H 1.48495 * 109.47467 * 59.99415 * 12 10 8 14 14 H 1.48500 * 109.46898 * 180.02562 * 12 10 8 15 15 H 1.48499 * 109.47020 * 299.99585 * 12 10 8 16 16 C 1.34771 * 119.99985 * 267.17992 * 6 5 2 17 17 O 1.21279 * 119.99859 * 184.86921 * 16 6 5 18 18 C 1.50704 * 120.00208 * 4.86550 * 16 6 5 19 19 H 1.09002 * 115.54780 * 347.88230 * 18 16 6 20 20 C 1.53001 * 117.49581 * 133.54242 * 18 16 6 21 21 C 1.52999 * 117.50146 * 202.20124 * 18 16 6 22 22 H 1.09001 * 117.49536 * 0.02562 * 21 18 16 23 23 C 1.53000 * 117.49652 * 144.99921 * 21 18 16 24 24 C 1.52999 * 117.49795 * 248.62327 * 23 21 18 25 25 C 1.52995 * 59.99983 * 252.51406 * 24 23 21 26 26 H 1.09006 * 109.46936 * 298.46942 * 1 2 3 27 27 H 1.08999 * 109.47239 * 58.46806 * 1 2 3 28 28 H 1.08999 * 109.47553 * 178.47186 * 1 2 3 29 29 H 1.09007 * 109.47141 * 179.97438 * 3 2 1 30 30 H 1.08993 * 109.47379 * 300.00464 * 3 2 1 31 31 H 1.09003 * 109.47159 * 60.00261 * 3 2 1 32 32 H 1.09002 * 109.47412 * 304.66301 * 4 2 1 33 33 H 1.09000 * 109.46998 * 64.66038 * 4 2 1 34 34 H 1.09001 * 109.47309 * 184.65500 * 4 2 1 35 35 H 1.08997 * 109.46845 * 297.17616 * 5 2 1 36 36 H 1.08997 * 109.47048 * 177.17546 * 5 2 1 37 37 H 1.09007 * 109.46453 * 215.75998 * 7 6 5 38 38 H 1.08994 * 109.47332 * 335.75375 * 7 6 5 39 39 H 0.96993 * 119.99637 * 180.02562 * 11 10 8 40 40 H 1.09003 * 117.49879 * 214.98229 * 20 18 16 41 41 H 1.08997 * 117.50264 * 0.02562 * 20 18 16 42 42 H 1.08996 * 115.55198 * 34.33143 * 23 21 18 43 43 H 1.09003 * 117.50302 * 0.02562 * 24 23 21 44 44 H 1.09000 * 117.49768 * 145.02237 * 24 23 21 45 45 H 1.09001 * 117.49832 * 252.50969 * 25 24 23 46 46 H 1.08994 * 117.50267 * 107.49343 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7213 1.2493 6 7 1.4968 -2.0815 1.2838 7 6 2.1991 -3.1682 0.5966 8 6 3.0785 -3.8981 1.5788 9 1 3.0536 -3.6341 2.6258 10 6 3.9150 -4.9029 1.1409 11 7 3.9450 -5.2246 -0.1339 12 14 5.0047 -5.8081 2.3585 13 1 4.1584 -6.4677 3.3850 14 1 5.8032 -6.8339 1.6406 15 1 5.9194 -4.8417 3.0177 16 6 0.3512 -2.3330 1.9476 17 8 -0.0520 -3.4720 2.0512 18 6 -0.4287 -1.1988 2.5612 19 1 0.0910 -0.2418 2.6073 20 6 -1.9400 -1.1713 2.3244 21 6 -1.3877 -1.5379 3.7042 22 1 -1.4542 -2.5812 4.0125 23 6 -1.5437 -0.5076 4.8245 24 6 -0.9912 -0.8742 6.2033 25 6 -2.5027 -0.8467 5.9674 26 1 -0.3633 0.4899 0.9034 27 1 -0.3634 0.5374 -0.8759 28 1 -0.3634 -1.0273 -0.0274 29 1 3.1301 1.4425 0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6101 -1.7220 -1.2919 33 1 1.7465 -0.1615 -2.1372 34 1 3.1268 -0.7941 -1.2084 35 1 1.7186 -0.1790 2.1385 36 1 3.1288 -0.7653 1.2244 37 1 1.4713 -3.8618 0.1754 38 1 2.8129 -2.7553 -0.2037 39 1 4.5331 -5.9317 -0.4419 40 1 -2.4147 -0.1962 2.2152 41 1 -2.3703 -1.9737 1.7252 42 1 -1.4769 0.5358 4.5164 43 1 -0.5162 -1.8492 6.3123 44 1 -0.5607 -0.0720 6.8026 45 1 -3.0665 -0.0263 6.4115 46 1 -3.0224 -1.8037 5.9212 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177339621.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:47:21 Heat of formation + Delta-G solvation = 1.298854 kcal Electronic energy + Delta-G solvation = -23173.581626 eV Core-core repulsion = 20064.541223 eV Total energy + Delta-G solvation = -3109.040403 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.90136 -37.95664 -36.84516 -34.90203 -33.67339 -32.29796 -28.19129 -27.11404 -26.80633 -25.54119 -24.35844 -23.46573 -22.38347 -21.67753 -20.05229 -19.16926 -17.80681 -16.79048 -16.37602 -15.82418 -15.14717 -14.76461 -14.52813 -14.31441 -13.92808 -13.67180 -13.32788 -12.94611 -12.85504 -12.35371 -12.13091 -12.04246 -11.76928 -11.60685 -11.42379 -11.30618 -11.24298 -11.15295 -11.08412 -10.92048 -10.78809 -10.70184 -10.52839 -10.40292 -10.16373 -10.08436 -9.85364 -9.51781 -9.39408 -8.77884 -8.37366 -7.54107 -5.99438 -4.02588 3.12747 3.35003 3.38867 3.43182 3.72881 3.94947 4.39294 4.47340 4.61530 4.84299 4.93125 5.02595 5.06702 5.10648 5.25076 5.32447 5.34650 5.37931 5.42889 5.44513 5.60236 5.72376 5.76208 5.80584 5.85138 5.88599 5.98124 6.02703 6.06676 6.11046 6.14290 6.20685 6.25385 6.31603 6.39738 6.45672 6.46432 6.65027 6.77622 7.16211 7.47357 7.63129 7.98120 8.30332 8.52661 8.96845 9.20055 9.61881 11.08413 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.012582 B = 0.006290 C = 0.004715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2224.906878 B = 4450.464233 C = 5937.664855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.088 4.088 3 C -0.137 4.137 4 C -0.140 4.140 5 C 0.121 3.879 6 N -0.589 5.589 7 C 0.246 3.754 8 C -0.520 4.520 9 H 0.055 0.945 10 C 0.060 3.940 11 N -0.898 5.898 12 Si 0.896 3.104 13 H -0.277 1.277 14 H -0.287 1.287 15 H -0.278 1.278 16 C 0.535 3.465 17 O -0.543 6.543 18 C -0.179 4.179 19 H 0.119 0.881 20 C -0.143 4.143 21 C -0.098 4.098 22 H 0.114 0.886 23 C -0.121 4.121 24 C -0.178 4.178 25 C -0.177 4.177 26 H 0.055 0.945 27 H 0.047 0.953 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.067 0.933 33 H 0.044 0.956 34 H 0.056 0.944 35 H 0.066 0.934 36 H 0.079 0.921 37 H 0.032 0.968 38 H 0.045 0.955 39 H 0.263 0.737 40 H 0.097 0.903 41 H 0.100 0.900 42 H 0.103 0.897 43 H 0.096 0.904 44 H 0.093 0.907 45 H 0.092 0.908 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.776 15.024 4.440 17.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.089 4.089 3 C -0.194 4.194 4 C -0.198 4.198 5 C -0.003 4.003 6 N -0.319 5.319 7 C 0.127 3.873 8 C -0.559 4.559 9 H 0.073 0.927 10 C -0.141 4.141 11 N -0.537 5.537 12 Si 0.724 3.276 13 H -0.202 1.202 14 H -0.212 1.212 15 H -0.203 1.203 16 C 0.322 3.678 17 O -0.421 6.421 18 C -0.200 4.200 19 H 0.137 0.863 20 C -0.181 4.181 21 C -0.117 4.117 22 H 0.132 0.868 23 C -0.139 4.139 24 C -0.215 4.215 25 C -0.214 4.214 26 H 0.074 0.926 27 H 0.066 0.934 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.063 0.937 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.097 0.903 37 H 0.050 0.950 38 H 0.063 0.937 39 H 0.072 0.928 40 H 0.116 0.884 41 H 0.118 0.882 42 H 0.121 0.879 43 H 0.115 0.885 44 H 0.111 0.889 45 H 0.110 0.890 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -8.862 14.261 4.338 17.342 hybrid contribution 0.833 -0.457 0.576 1.111 sum -8.029 13.804 4.915 16.708 Atomic orbital electron populations 1.22029 0.94724 1.02130 1.00896 1.21008 0.96006 0.95051 0.96850 1.21802 1.01075 0.95308 1.01258 1.21950 1.01289 1.00926 0.95600 1.21562 0.99428 0.83223 0.96106 1.48063 1.22968 1.09222 1.51665 1.19362 0.91609 0.83993 0.92330 1.21427 1.21790 1.18083 0.94603 0.92658 1.24908 0.97141 0.96813 0.95244 1.69915 1.39097 1.30937 1.13755 0.86595 0.80328 0.79482 0.81240 1.20246 1.21235 1.20330 1.19327 0.81243 0.88413 0.78824 1.90663 1.69326 1.22611 1.59464 1.22593 0.92977 1.00355 1.04087 0.86349 1.22948 0.93235 1.02990 0.98888 1.21808 1.02341 0.99279 0.88253 0.86846 1.21718 1.04915 0.98378 0.88930 1.22952 0.96246 1.03410 0.98863 1.22921 0.92778 1.03157 1.02527 0.92608 0.93425 0.92208 0.92573 0.92818 0.92996 0.91444 0.93682 0.92458 0.91536 0.90296 0.95011 0.93687 0.92786 0.88431 0.88180 0.87907 0.88511 0.88898 0.88971 0.88702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 6.66 37.16 0.25 -1.61 16 2 C -0.09 -1.22 0.85 -154.51 -0.13 -1.35 16 3 C -0.14 -1.52 8.47 37.16 0.31 -1.20 16 4 C -0.14 -2.19 7.12 37.15 0.26 -1.93 16 5 C 0.12 2.00 4.48 -4.04 -0.02 1.98 16 6 N -0.59 -12.42 2.00 -175.06 -0.35 -12.77 16 7 C 0.25 6.39 3.92 -5.20 -0.02 6.37 16 8 C -0.52 -14.98 9.34 -34.44 -0.32 -15.30 16 9 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 10 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 11 N -0.90 -26.74 13.29 55.43 0.74 -26.00 16 12 Si 0.90 22.28 29.54 -169.99 -5.02 17.26 16 13 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 14 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 15 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 16 C 0.54 11.26 6.08 -10.99 -0.07 11.19 16 17 O -0.54 -13.93 16.13 5.56 0.09 -13.84 16 18 C -0.18 -2.75 3.08 -91.77 -0.28 -3.04 16 19 H 0.12 1.60 4.89 -51.93 -0.25 1.34 16 20 C -0.14 -1.89 9.12 -26.69 -0.24 -2.13 16 21 C -0.10 -1.39 5.36 -90.58 -0.49 -1.87 16 22 H 0.11 1.88 7.85 -51.93 -0.41 1.47 16 23 C -0.12 -1.38 5.85 -90.62 -0.53 -1.91 16 24 C -0.18 -1.95 10.25 -26.73 -0.27 -2.23 16 25 C -0.18 -1.77 10.25 -26.73 -0.27 -2.05 16 26 H 0.05 0.65 5.79 -51.93 -0.30 0.35 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.95 6.23 -51.93 -0.32 0.62 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 1.25 6.23 -51.93 -0.32 0.92 16 33 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.93 7.99 -51.93 -0.41 0.51 16 35 H 0.07 0.96 5.91 -51.93 -0.31 0.65 16 36 H 0.08 1.37 8.09 -51.93 -0.42 0.95 16 37 H 0.03 0.94 7.68 -51.92 -0.40 0.54 16 38 H 0.05 1.17 5.94 -51.93 -0.31 0.86 16 39 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 40 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.10 1.45 8.14 -51.93 -0.42 1.03 16 42 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.10 1.18 8.14 -51.93 -0.42 0.75 16 44 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 LS Contribution 358.99 15.07 5.41 5.41 Total: -1.00 -32.10 358.99 -9.13 -41.23 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -8.08 Total: 2.14 kcal Atomic # 6 Polarization: -11.51 SS G_CDS: -1.92 Total: -13.43 kcal Atomic # 7 Polarization: -39.15 SS G_CDS: 0.39 Total: -38.77 kcal Atomic # 8 Polarization: -13.93 SS G_CDS: 0.09 Total: -13.84 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.10 -9.13 -41.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177339621.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.526 kcal (2) G-P(sol) polarization free energy of solvation -32.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds