Wall clock time and date at job start Tue Mar 31 2020 01:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47189 * 2 1 4 4 C 1.52995 * 109.47269 * 239.99797 * 2 1 3 5 5 C 1.53008 * 109.47044 * 119.99970 * 2 1 3 6 6 N 1.46504 * 109.46792 * 57.17528 * 5 2 1 7 7 C 1.46501 * 119.99619 * 87.18382 * 6 5 2 8 8 C 1.50696 * 109.47125 * 95.76139 * 7 6 5 9 9 H 1.08002 * 120.00064 * 4.75958 * 8 7 6 10 10 C 1.37882 * 119.99983 * 184.75907 * 8 7 6 11 11 N 1.31515 * 119.99781 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 120.00009 * 180.02562 * 10 8 7 13 13 H 1.48495 * 109.47467 * 59.99415 * 12 10 8 14 14 H 1.48500 * 109.46898 * 180.02562 * 12 10 8 15 15 H 1.48499 * 109.47020 * 299.99585 * 12 10 8 16 16 C 1.34771 * 119.99985 * 267.17992 * 6 5 2 17 17 O 1.21279 * 119.99859 * 184.86921 * 16 6 5 18 18 C 1.50704 * 120.00208 * 4.86550 * 16 6 5 19 19 H 1.09002 * 115.54780 * 347.88230 * 18 16 6 20 20 C 1.53001 * 117.49581 * 133.54242 * 18 16 6 21 21 C 1.52999 * 117.50146 * 202.20124 * 18 16 6 22 22 H 1.09001 * 117.49536 * 0.02562 * 21 18 16 23 23 C 1.53000 * 117.49652 * 144.99921 * 21 18 16 24 24 C 1.52999 * 117.49795 * 248.62327 * 23 21 18 25 25 C 1.52995 * 59.99983 * 252.51406 * 24 23 21 26 26 H 1.09006 * 109.46936 * 298.46942 * 1 2 3 27 27 H 1.08999 * 109.47239 * 58.46806 * 1 2 3 28 28 H 1.08999 * 109.47553 * 178.47186 * 1 2 3 29 29 H 1.09007 * 109.47141 * 179.97438 * 3 2 1 30 30 H 1.08993 * 109.47379 * 300.00464 * 3 2 1 31 31 H 1.09003 * 109.47159 * 60.00261 * 3 2 1 32 32 H 1.09002 * 109.47412 * 304.66301 * 4 2 1 33 33 H 1.09000 * 109.46998 * 64.66038 * 4 2 1 34 34 H 1.09001 * 109.47309 * 184.65500 * 4 2 1 35 35 H 1.08997 * 109.46845 * 297.17616 * 5 2 1 36 36 H 1.08997 * 109.47048 * 177.17546 * 5 2 1 37 37 H 1.09007 * 109.46453 * 215.75998 * 7 6 5 38 38 H 1.08994 * 109.47332 * 335.75375 * 7 6 5 39 39 H 0.96993 * 119.99637 * 180.02562 * 11 10 8 40 40 H 1.09003 * 117.49879 * 214.98229 * 20 18 16 41 41 H 1.08997 * 117.50264 * 0.02562 * 20 18 16 42 42 H 1.08996 * 115.55198 * 34.33143 * 23 21 18 43 43 H 1.09003 * 117.50302 * 0.02562 * 24 23 21 44 44 H 1.09000 * 117.49768 * 145.02237 * 24 23 21 45 45 H 1.09001 * 117.49832 * 252.50969 * 25 24 23 46 46 H 1.08994 * 117.50267 * 107.49343 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7213 1.2493 6 7 1.4968 -2.0815 1.2838 7 6 2.1991 -3.1682 0.5966 8 6 3.0785 -3.8981 1.5788 9 1 3.0536 -3.6341 2.6258 10 6 3.9150 -4.9029 1.1409 11 7 3.9450 -5.2246 -0.1339 12 14 5.0047 -5.8081 2.3585 13 1 4.1584 -6.4677 3.3850 14 1 5.8032 -6.8339 1.6406 15 1 5.9194 -4.8417 3.0177 16 6 0.3512 -2.3330 1.9476 17 8 -0.0520 -3.4720 2.0512 18 6 -0.4287 -1.1988 2.5612 19 1 0.0910 -0.2418 2.6073 20 6 -1.9400 -1.1713 2.3244 21 6 -1.3877 -1.5379 3.7042 22 1 -1.4542 -2.5812 4.0125 23 6 -1.5437 -0.5076 4.8245 24 6 -0.9912 -0.8742 6.2033 25 6 -2.5027 -0.8467 5.9674 26 1 -0.3633 0.4899 0.9034 27 1 -0.3634 0.5374 -0.8759 28 1 -0.3634 -1.0273 -0.0274 29 1 3.1301 1.4425 0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6101 -1.7220 -1.2919 33 1 1.7465 -0.1615 -2.1372 34 1 3.1268 -0.7941 -1.2084 35 1 1.7186 -0.1790 2.1385 36 1 3.1288 -0.7653 1.2244 37 1 1.4713 -3.8618 0.1754 38 1 2.8129 -2.7553 -0.2037 39 1 4.5331 -5.9317 -0.4419 40 1 -2.4147 -0.1962 2.2152 41 1 -2.3703 -1.9737 1.7252 42 1 -1.4769 0.5358 4.5164 43 1 -0.5162 -1.8492 6.3123 44 1 -0.5607 -0.0720 6.8026 45 1 -3.0665 -0.0263 6.4115 46 1 -3.0224 -1.8037 5.9212 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177339621.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:47:20 Heat of formation + Delta-G solvation = -16.280702 kcal Electronic energy + Delta-G solvation = -23174.343933 eV Core-core repulsion = 20064.541223 eV Total energy + Delta-G solvation = -3109.802710 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.38484 -39.06913 -38.23706 -36.12591 -35.41364 -34.29965 -30.08760 -28.20995 -28.06478 -26.96669 -26.03390 -24.60498 -23.53542 -23.02327 -21.05753 -20.52292 -19.20867 -18.72391 -18.06095 -17.25476 -16.64853 -16.24162 -16.05522 -15.58614 -15.13018 -14.97377 -14.73427 -14.40448 -14.22871 -13.99348 -13.53303 -13.32754 -13.21756 -13.00886 -12.74455 -12.63902 -12.56361 -12.46099 -12.37961 -12.21821 -12.17302 -12.09723 -11.98507 -11.73491 -11.64402 -11.50895 -11.36624 -10.89594 -10.64232 -10.61127 -10.29877 -9.33961 -8.22941 -6.36979 1.32110 1.36515 1.43839 1.66612 2.28914 2.42397 2.72551 3.05474 3.30854 3.51587 3.75838 3.80773 3.91846 3.97160 4.06052 4.15502 4.23692 4.32237 4.37547 4.42280 4.55610 4.62758 4.76803 4.84006 4.84424 4.85140 4.94089 4.97262 5.01703 5.07197 5.09576 5.14300 5.16526 5.22991 5.24098 5.27922 5.31531 5.40162 5.40838 5.50040 5.56072 5.62683 5.89582 6.09244 6.69856 6.85002 7.27880 7.54054 8.83056 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.012582 B = 0.006290 C = 0.004715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2224.906878 B = 4450.464233 C = 5937.664855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.082 4.082 3 C -0.129 4.129 4 C -0.138 4.138 5 C 0.115 3.885 6 N -0.592 5.592 7 C 0.267 3.733 8 C -0.542 4.542 9 H 0.043 0.957 10 C 0.010 3.990 11 N -0.927 5.927 12 Si 0.962 3.038 13 H -0.282 1.282 14 H -0.274 1.274 15 H -0.261 1.261 16 C 0.524 3.476 17 O -0.606 6.606 18 C -0.182 4.182 19 H 0.150 0.850 20 C -0.121 4.121 21 C -0.098 4.098 22 H 0.076 0.924 23 C -0.121 4.121 24 C -0.188 4.188 25 C -0.165 4.165 26 H 0.080 0.920 27 H 0.066 0.934 28 H 0.024 0.976 29 H 0.054 0.946 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.025 0.975 33 H 0.068 0.932 34 H 0.043 0.957 35 H 0.098 0.902 36 H 0.065 0.935 37 H -0.019 1.019 38 H 0.040 0.960 39 H 0.267 0.733 40 H 0.142 0.858 41 H 0.078 0.922 42 H 0.132 0.868 43 H 0.072 0.928 44 H 0.113 0.887 45 H 0.119 0.881 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.208 18.742 5.834 21.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.083 4.083 3 C -0.187 4.187 4 C -0.196 4.196 5 C -0.008 4.008 6 N -0.320 5.320 7 C 0.146 3.854 8 C -0.580 4.580 9 H 0.062 0.938 10 C -0.189 4.189 11 N -0.566 5.566 12 Si 0.787 3.213 13 H -0.208 1.208 14 H -0.199 1.199 15 H -0.185 1.185 16 C 0.315 3.685 17 O -0.488 6.488 18 C -0.202 4.202 19 H 0.167 0.833 20 C -0.158 4.158 21 C -0.117 4.117 22 H 0.095 0.905 23 C -0.139 4.139 24 C -0.225 4.225 25 C -0.202 4.202 26 H 0.099 0.901 27 H 0.085 0.915 28 H 0.043 0.957 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.094 0.906 32 H 0.045 0.955 33 H 0.087 0.913 34 H 0.062 0.938 35 H 0.116 0.884 36 H 0.084 0.916 37 H -0.001 1.001 38 H 0.058 0.942 39 H 0.076 0.924 40 H 0.160 0.840 41 H 0.097 0.903 42 H 0.150 0.850 43 H 0.091 0.909 44 H 0.131 0.869 45 H 0.137 0.863 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -9.283 18.033 5.730 21.076 hybrid contribution 0.943 -1.684 0.093 1.933 sum -8.340 16.349 5.823 19.255 Atomic orbital electron populations 1.21989 0.93732 1.00494 1.03068 1.20981 0.96743 0.96537 0.94056 1.21748 1.01054 0.92654 1.03229 1.21912 1.00198 0.99374 0.98086 1.21894 0.98751 0.81079 0.99064 1.48029 1.23016 1.10046 1.50957 1.18765 0.89979 0.84645 0.92033 1.21686 1.22724 1.19201 0.94405 0.93825 1.25790 0.98495 0.97435 0.97173 1.70029 1.39737 1.31394 1.15479 0.85551 0.78521 0.78534 0.78712 1.20757 1.19907 1.18526 1.20360 0.81020 0.89290 0.77879 1.90619 1.70785 1.25658 1.61777 1.22468 0.93682 0.98859 1.05199 0.83270 1.23062 0.91015 1.04402 0.97336 1.21794 1.01655 0.98619 0.89676 0.90534 1.21748 1.05820 0.98553 0.87803 1.23004 0.97253 1.02979 0.99299 1.23005 0.92263 1.03654 1.01274 0.90097 0.91536 0.95707 0.92700 0.91248 0.90621 0.95542 0.91326 0.93773 0.88412 0.91636 1.00109 0.94185 0.92404 0.83981 0.90348 0.85008 0.90897 0.86886 0.86319 0.89655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.25 6.66 71.98 0.48 -2.77 16 2 C -0.08 -2.15 0.85 -52.18 -0.04 -2.19 16 3 C -0.13 -2.36 8.47 71.98 0.61 -1.75 16 4 C -0.14 -4.39 7.12 71.98 0.51 -3.88 16 5 C 0.11 3.71 4.48 86.38 0.39 4.10 16 6 N -0.59 -26.11 2.00 -826.15 -1.65 -27.76 16 7 C 0.27 14.91 3.92 85.63 0.34 15.24 16 8 C -0.54 -32.79 9.34 25.60 0.24 -32.55 16 9 H 0.04 2.67 7.81 -2.91 -0.02 2.65 16 10 C 0.01 0.59 5.46 84.66 0.46 1.06 16 11 N -0.93 -57.30 13.29 21.45 0.28 -57.01 16 12 Si 0.96 46.68 29.54 68.60 2.03 48.71 16 13 H -0.28 -13.82 7.11 99.48 0.71 -13.12 16 14 H -0.27 -12.67 7.11 99.48 0.71 -11.97 16 15 H -0.26 -11.88 7.11 99.48 0.71 -11.18 16 16 C 0.52 23.08 6.08 87.66 0.53 23.61 16 17 O -0.61 -33.59 16.13 -3.03 -0.05 -33.64 16 18 C -0.18 -5.36 3.08 -11.54 -0.04 -5.40 16 19 H 0.15 3.43 4.89 -2.39 -0.01 3.42 16 20 C -0.12 -2.95 9.12 30.62 0.28 -2.67 16 21 C -0.10 -2.70 5.36 -10.77 -0.06 -2.76 16 22 H 0.08 2.68 7.85 -2.39 -0.02 2.66 16 23 C -0.12 -2.37 5.85 -10.79 -0.06 -2.43 16 24 C -0.19 -3.75 10.25 30.59 0.31 -3.44 16 25 C -0.17 -2.85 10.25 30.59 0.31 -2.54 16 26 H 0.08 1.52 5.79 -2.38 -0.01 1.50 16 27 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.02 0.76 6.23 -2.39 -0.01 0.75 16 29 H 0.05 1.03 8.14 -2.38 -0.02 1.01 16 30 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.03 1.03 6.23 -2.39 -0.01 1.01 16 33 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.04 1.47 7.99 -2.39 -0.02 1.45 16 35 H 0.10 2.54 5.91 -2.39 -0.01 2.52 16 36 H 0.07 2.29 8.09 -2.39 -0.02 2.27 16 37 H -0.02 -1.24 7.68 -2.38 -0.02 -1.26 16 38 H 0.04 2.24 5.94 -2.39 -0.01 2.23 16 39 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 40 H 0.14 2.26 8.14 -2.39 -0.02 2.24 16 41 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 42 H 0.13 1.89 8.14 -2.39 -0.02 1.87 16 43 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 44 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 45 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 46 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -77.00 358.99 5.81 -71.19 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: 0.94 Total: 16.89 kcal Atomic # 6 Polarization: -22.64 SS G_CDS: 4.26 Total: -18.37 kcal Atomic # 7 Polarization: -83.40 SS G_CDS: -1.36 Total: -84.77 kcal Atomic # 8 Polarization: -33.59 SS G_CDS: -0.05 Total: -33.64 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 2.03 Total: 48.71 kcal Total: -77.00 5.81 -71.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177339621.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.905 kcal (2) G-P(sol) polarization free energy of solvation -76.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds