Wall clock time and date at job start Tue Mar 31 2020 01:47:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.46969 * 2 1 4 4 C 1.52995 * 109.47212 * 239.99515 * 2 1 3 5 5 C 1.52998 * 109.46861 * 119.99532 * 2 1 3 6 6 N 1.46501 * 109.47270 * 62.95742 * 5 2 1 7 7 C 1.46505 * 120.00333 * 273.69656 * 6 5 2 8 8 C 1.50694 * 109.47024 * 264.36525 * 7 6 5 9 9 H 1.08005 * 120.00032 * 354.98630 * 8 7 6 10 10 C 1.37880 * 120.00325 * 174.99118 * 8 7 6 11 11 N 1.31511 * 120.00053 * 179.97438 * 10 8 7 12 12 Si 1.86797 * 119.99554 * 359.97438 * 10 8 7 13 13 H 1.48497 * 109.47300 * 269.99693 * 12 10 8 14 14 H 1.48505 * 109.46923 * 149.99896 * 12 10 8 15 15 H 1.48498 * 109.47329 * 29.99791 * 12 10 8 16 16 C 1.34775 * 120.00012 * 93.69064 * 6 5 2 17 17 O 1.21279 * 120.00159 * 185.47026 * 16 6 5 18 18 C 1.50698 * 120.00073 * 5.47159 * 16 6 5 19 19 H 1.08997 * 115.55106 * 30.14595 * 18 16 6 20 20 C 1.52998 * 117.50133 * 244.48082 * 18 16 6 21 21 C 1.53000 * 117.49982 * 175.81700 * 18 16 6 22 22 H 1.09000 * 117.49908 * 0.02562 * 21 18 16 23 23 C 1.52998 * 117.49756 * 214.97697 * 21 18 16 24 24 C 1.53004 * 117.49802 * 128.75075 * 23 21 18 25 25 C 1.53000 * 117.49879 * 60.09313 * 23 21 18 26 26 H 1.08994 * 109.47442 * 292.74463 * 1 2 3 27 27 H 1.08994 * 109.47041 * 52.74960 * 1 2 3 28 28 H 1.08998 * 109.46762 * 172.74383 * 1 2 3 29 29 H 1.08998 * 109.47235 * 179.97438 * 3 2 1 30 30 H 1.08999 * 109.47071 * 299.99732 * 3 2 1 31 31 H 1.09003 * 109.46990 * 59.99814 * 3 2 1 32 32 H 1.08995 * 109.47529 * 305.25111 * 4 2 1 33 33 H 1.09004 * 109.46667 * 65.25744 * 4 2 1 34 34 H 1.09001 * 109.46828 * 185.24892 * 4 2 1 35 35 H 1.09003 * 109.47410 * 302.96108 * 5 2 1 36 36 H 1.08991 * 109.47183 * 182.95628 * 5 2 1 37 37 H 1.08990 * 109.47469 * 144.35926 * 7 6 5 38 38 H 1.09003 * 109.46838 * 24.35886 * 7 6 5 39 39 H 0.97005 * 119.99544 * 180.02562 * 11 10 8 40 40 H 1.09005 * 117.49764 * 359.97438 * 20 18 16 41 41 H 1.08998 * 117.50382 * 144.99672 * 20 18 16 42 42 H 1.09002 * 115.55198 * 274.41710 * 23 21 18 43 43 H 1.09003 * 117.49821 * 359.97438 * 24 23 21 44 44 H 1.08996 * 117.50380 * 145.02122 * 24 23 21 45 45 H 1.09001 * 117.49688 * 214.97569 * 25 23 21 46 46 H 1.08999 * 117.49658 * 359.97320 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 2.0400 -0.7211 1.2493 6 7 1.6107 -2.1214 1.2143 7 6 0.2954 -2.4977 1.7386 8 6 0.4380 -2.9662 3.1637 9 1 1.4190 -3.0592 3.6060 10 6 -0.6837 -3.2763 3.9031 11 7 -0.5591 -3.6856 5.1467 12 14 -2.3803 -3.1149 3.1383 13 1 -2.9039 -1.7464 3.3795 14 1 -3.2962 -4.1104 3.7510 15 1 -2.2896 -3.3597 1.6764 16 6 2.4257 -3.0635 0.6998 17 8 2.0333 -4.2047 0.5794 18 6 3.8245 -2.6988 0.2740 19 1 4.2881 -1.8845 0.8308 20 6 4.1652 -2.8218 -1.2125 21 6 4.7331 -3.8303 -0.2107 22 1 4.3190 -4.8385 -0.2220 23 6 6.2230 -3.7320 0.1229 24 6 6.8810 -4.9459 0.7821 25 6 6.6141 -3.6806 1.6012 26 1 -0.3634 0.3973 0.9477 27 1 -0.3633 0.6220 -0.8180 28 1 -0.3633 -1.0194 -0.1298 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6020 -1.7182 -1.2974 33 1 1.7556 -0.1560 -2.1366 34 1 3.1260 -0.8034 -1.2033 35 1 1.6339 -0.2388 2.1385 36 1 3.1286 -0.6755 1.2762 37 1 -0.1212 -3.3016 1.1318 38 1 -0.3697 -1.6348 1.7047 39 1 -1.3484 -3.9041 5.6666 40 1 3.3777 -3.1669 -1.8825 41 1 4.8530 -2.0885 -1.6336 42 1 6.8243 -3.1520 -0.5773 43 1 6.2523 -5.8144 0.9785 44 1 7.9152 -5.1642 0.5160 45 1 7.4729 -3.0670 1.8735 46 1 5.8099 -3.7163 2.3360 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177339638.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:47:25 Heat of formation + Delta-G solvation = 4.713323 kcal Electronic energy + Delta-G solvation = -23321.321117 eV Core-core repulsion = 20212.428777 eV Total energy + Delta-G solvation = -3108.892341 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.98363 -38.00960 -36.89543 -34.85407 -33.78523 -32.30916 -28.74132 -27.19213 -26.99069 -25.67500 -24.55942 -23.31293 -22.35177 -21.53803 -19.85296 -19.19580 -17.92027 -16.99159 -16.66554 -15.67068 -15.33304 -14.98765 -14.55396 -14.20310 -14.09031 -13.79826 -13.42888 -13.12938 -12.81951 -12.42464 -12.26631 -12.14550 -11.85003 -11.70378 -11.57383 -11.45125 -11.40535 -11.23494 -11.09729 -10.82804 -10.76539 -10.64594 -10.59030 -10.47434 -10.22668 -10.07413 -9.83205 -9.50603 -9.48266 -8.91330 -8.56245 -7.60893 -6.06349 -4.03960 3.12637 3.26655 3.35216 3.39126 3.68970 3.92231 4.15462 4.40911 4.66841 4.86058 4.88600 4.98614 5.01558 5.03963 5.17761 5.25895 5.26716 5.38335 5.42456 5.52059 5.66605 5.68253 5.69173 5.74436 5.77264 5.91296 5.93165 5.93952 6.05098 6.07575 6.16237 6.18948 6.20267 6.22990 6.29576 6.36382 6.43841 6.55605 6.58035 6.73708 7.05062 7.42167 7.64859 8.34666 8.50610 8.97453 9.07373 9.54472 11.07331 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.013794 B = 0.006491 C = 0.004959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.418745 B = 4312.920056 C = 5644.565738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.087 4.087 3 C -0.136 4.136 4 C -0.143 4.143 5 C 0.121 3.879 6 N -0.585 5.585 7 C 0.216 3.784 8 C -0.525 4.525 9 H 0.073 0.927 10 C 0.072 3.928 11 N -0.898 5.898 12 Si 0.872 3.128 13 H -0.275 1.275 14 H -0.284 1.284 15 H -0.265 1.265 16 C 0.541 3.459 17 O -0.543 6.543 18 C -0.176 4.176 19 H 0.119 0.881 20 C -0.145 4.145 21 C -0.097 4.097 22 H 0.117 0.883 23 C -0.124 4.124 24 C -0.176 4.176 25 C -0.177 4.177 26 H 0.057 0.943 27 H 0.047 0.953 28 H 0.062 0.938 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.047 0.953 34 H 0.062 0.938 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.034 0.966 38 H 0.033 0.967 39 H 0.264 0.736 40 H 0.098 0.902 41 H 0.099 0.901 42 H 0.105 0.895 43 H 0.096 0.904 44 H 0.091 0.909 45 H 0.092 0.908 46 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.007 8.162 -12.671 18.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.088 4.088 3 C -0.194 4.194 4 C -0.200 4.200 5 C -0.004 4.004 6 N -0.314 5.314 7 C 0.095 3.905 8 C -0.564 4.564 9 H 0.091 0.909 10 C -0.130 4.130 11 N -0.537 5.537 12 Si 0.699 3.301 13 H -0.201 1.201 14 H -0.210 1.210 15 H -0.189 1.189 16 C 0.328 3.672 17 O -0.421 6.421 18 C -0.197 4.197 19 H 0.137 0.863 20 C -0.182 4.182 21 C -0.116 4.116 22 H 0.135 0.865 23 C -0.142 4.142 24 C -0.213 4.213 25 C -0.214 4.214 26 H 0.076 0.924 27 H 0.066 0.934 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.080 0.920 35 H 0.098 0.902 36 H 0.090 0.910 37 H 0.052 0.948 38 H 0.051 0.949 39 H 0.074 0.926 40 H 0.116 0.884 41 H 0.117 0.883 42 H 0.123 0.877 43 H 0.114 0.886 44 H 0.110 0.890 45 H 0.110 0.890 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 10.650 7.491 -12.547 18.082 hybrid contribution -0.982 0.190 -0.031 1.001 sum 9.668 7.682 -12.578 17.626 Atomic orbital electron populations 1.21993 0.94528 1.02277 1.01282 1.20991 0.96360 0.95190 0.96270 1.21793 1.00678 0.95261 1.01675 1.22066 1.01292 1.00369 0.96320 1.21598 0.99219 0.82388 0.97178 1.47723 1.18513 1.06053 1.59154 1.19725 0.79755 0.95855 0.95135 1.21366 0.95272 1.44684 0.95068 0.90861 1.24848 0.98880 0.94670 0.94640 1.69899 1.29790 1.45490 1.08517 0.86906 0.84710 0.78218 0.80291 1.20063 1.20969 1.18919 1.19334 0.85340 0.85006 0.77538 1.90651 1.75891 1.20058 1.55503 1.22433 0.95465 1.02875 0.98902 0.86336 1.23034 1.02868 1.01730 0.90617 1.21866 0.91283 0.96144 1.02279 0.86502 1.21744 0.93954 1.02656 0.95889 1.22984 1.01188 0.92686 1.04443 1.23004 1.03341 1.00960 0.94132 0.92420 0.93391 0.91920 0.92779 0.92795 0.92539 0.92543 0.93387 0.91954 0.90247 0.91046 0.94809 0.94909 0.92636 0.88381 0.88294 0.87744 0.88558 0.89017 0.89001 0.88292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 7.05 37.16 0.26 -1.82 16 2 C -0.09 -1.15 0.85 -154.51 -0.13 -1.28 16 3 C -0.14 -1.43 8.47 37.16 0.31 -1.12 16 4 C -0.14 -1.81 6.50 37.16 0.24 -1.57 16 5 C 0.12 1.91 4.54 -4.04 -0.02 1.90 16 6 N -0.58 -11.93 2.01 -175.07 -0.35 -12.28 16 7 C 0.22 5.27 3.11 -5.19 -0.02 5.25 16 8 C -0.53 -15.24 9.89 -34.44 -0.34 -15.58 16 9 H 0.07 2.35 8.06 -52.48 -0.42 1.93 16 10 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 11 N -0.90 -27.96 13.96 55.43 0.77 -27.19 16 12 Si 0.87 21.66 27.37 -169.99 -4.65 17.01 16 13 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 14 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 15 H -0.26 -6.40 6.69 56.52 0.38 -6.03 16 16 C 0.54 11.11 5.93 -10.99 -0.07 11.05 16 17 O -0.54 -13.60 15.91 5.56 0.09 -13.51 16 18 C -0.18 -2.66 3.78 -91.77 -0.35 -3.01 16 19 H 0.12 1.63 6.36 -51.93 -0.33 1.30 16 20 C -0.15 -1.78 7.20 -26.69 -0.19 -1.97 16 21 C -0.10 -1.36 5.38 -90.58 -0.49 -1.84 16 22 H 0.12 1.91 7.67 -51.93 -0.40 1.51 16 23 C -0.12 -1.43 5.87 -90.62 -0.53 -1.96 16 24 C -0.18 -1.96 10.25 -26.69 -0.27 -2.23 16 25 C -0.18 -2.08 10.18 -26.69 -0.27 -2.35 16 26 H 0.06 0.85 7.87 -51.93 -0.41 0.45 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 1.05 6.38 -51.93 -0.33 0.72 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.85 6.60 -51.93 -0.34 0.51 16 33 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.70 5.32 -51.93 -0.28 0.43 16 35 H 0.08 1.33 8.10 -51.93 -0.42 0.91 16 36 H 0.07 0.99 5.74 -51.93 -0.30 0.69 16 37 H 0.03 0.90 6.93 -51.93 -0.36 0.54 16 38 H 0.03 0.75 4.95 -51.93 -0.26 0.50 16 39 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 40 H 0.10 1.28 8.02 -51.93 -0.42 0.86 16 41 H 0.10 0.95 8.06 -51.93 -0.42 0.53 16 42 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 43 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 44 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 45 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 46 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 354.42 15.07 5.34 5.34 Total: -1.00 -33.10 354.42 -8.82 -41.93 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -8.07 Total: 3.24 kcal Atomic # 6 Polarization: -12.58 SS G_CDS: -1.95 Total: -14.53 kcal Atomic # 7 Polarization: -39.90 SS G_CDS: 0.42 Total: -39.47 kcal Atomic # 8 Polarization: -13.60 SS G_CDS: 0.09 Total: -13.51 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.65 Total: 17.01 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.10 -8.82 -41.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177339638.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.641 kcal (2) G-P(sol) polarization free energy of solvation -33.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds