Wall clock time and date at job start Tue Mar 31 2020 01:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.46969 * 2 1 4 4 C 1.52995 * 109.47212 * 239.99515 * 2 1 3 5 5 C 1.52998 * 109.46861 * 119.99532 * 2 1 3 6 6 N 1.46501 * 109.47270 * 62.95742 * 5 2 1 7 7 C 1.46505 * 120.00333 * 273.69656 * 6 5 2 8 8 C 1.50694 * 109.47024 * 264.36525 * 7 6 5 9 9 H 1.08005 * 120.00032 * 354.98630 * 8 7 6 10 10 C 1.37880 * 120.00325 * 174.99118 * 8 7 6 11 11 N 1.31511 * 120.00053 * 179.97438 * 10 8 7 12 12 Si 1.86797 * 119.99554 * 359.97438 * 10 8 7 13 13 H 1.48497 * 109.47300 * 269.99693 * 12 10 8 14 14 H 1.48505 * 109.46923 * 149.99896 * 12 10 8 15 15 H 1.48498 * 109.47329 * 29.99791 * 12 10 8 16 16 C 1.34775 * 120.00012 * 93.69064 * 6 5 2 17 17 O 1.21279 * 120.00159 * 185.47026 * 16 6 5 18 18 C 1.50698 * 120.00073 * 5.47159 * 16 6 5 19 19 H 1.08997 * 115.55106 * 30.14595 * 18 16 6 20 20 C 1.52998 * 117.50133 * 244.48082 * 18 16 6 21 21 C 1.53000 * 117.49982 * 175.81700 * 18 16 6 22 22 H 1.09000 * 117.49908 * 0.02562 * 21 18 16 23 23 C 1.52998 * 117.49756 * 214.97697 * 21 18 16 24 24 C 1.53004 * 117.49802 * 128.75075 * 23 21 18 25 25 C 1.53000 * 117.49879 * 60.09313 * 23 21 18 26 26 H 1.08994 * 109.47442 * 292.74463 * 1 2 3 27 27 H 1.08994 * 109.47041 * 52.74960 * 1 2 3 28 28 H 1.08998 * 109.46762 * 172.74383 * 1 2 3 29 29 H 1.08998 * 109.47235 * 179.97438 * 3 2 1 30 30 H 1.08999 * 109.47071 * 299.99732 * 3 2 1 31 31 H 1.09003 * 109.46990 * 59.99814 * 3 2 1 32 32 H 1.08995 * 109.47529 * 305.25111 * 4 2 1 33 33 H 1.09004 * 109.46667 * 65.25744 * 4 2 1 34 34 H 1.09001 * 109.46828 * 185.24892 * 4 2 1 35 35 H 1.09003 * 109.47410 * 302.96108 * 5 2 1 36 36 H 1.08991 * 109.47183 * 182.95628 * 5 2 1 37 37 H 1.08990 * 109.47469 * 144.35926 * 7 6 5 38 38 H 1.09003 * 109.46838 * 24.35886 * 7 6 5 39 39 H 0.97005 * 119.99544 * 180.02562 * 11 10 8 40 40 H 1.09005 * 117.49764 * 359.97438 * 20 18 16 41 41 H 1.08998 * 117.50382 * 144.99672 * 20 18 16 42 42 H 1.09002 * 115.55198 * 274.41710 * 23 21 18 43 43 H 1.09003 * 117.49821 * 359.97438 * 24 23 21 44 44 H 1.08996 * 117.50380 * 145.02122 * 24 23 21 45 45 H 1.09001 * 117.49688 * 214.97569 * 25 23 21 46 46 H 1.08999 * 117.49658 * 359.97320 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 2.0400 -0.7211 1.2493 6 7 1.6107 -2.1214 1.2143 7 6 0.2954 -2.4977 1.7386 8 6 0.4380 -2.9662 3.1637 9 1 1.4190 -3.0592 3.6060 10 6 -0.6837 -3.2763 3.9031 11 7 -0.5591 -3.6856 5.1467 12 14 -2.3803 -3.1149 3.1383 13 1 -2.9039 -1.7464 3.3795 14 1 -3.2962 -4.1104 3.7510 15 1 -2.2896 -3.3597 1.6764 16 6 2.4257 -3.0635 0.6998 17 8 2.0333 -4.2047 0.5794 18 6 3.8245 -2.6988 0.2740 19 1 4.2881 -1.8845 0.8308 20 6 4.1652 -2.8218 -1.2125 21 6 4.7331 -3.8303 -0.2107 22 1 4.3190 -4.8385 -0.2220 23 6 6.2230 -3.7320 0.1229 24 6 6.8810 -4.9459 0.7821 25 6 6.6141 -3.6806 1.6012 26 1 -0.3634 0.3973 0.9477 27 1 -0.3633 0.6220 -0.8180 28 1 -0.3633 -1.0194 -0.1298 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6020 -1.7182 -1.2974 33 1 1.7556 -0.1560 -2.1366 34 1 3.1260 -0.8034 -1.2033 35 1 1.6339 -0.2388 2.1385 36 1 3.1286 -0.6755 1.2762 37 1 -0.1212 -3.3016 1.1318 38 1 -0.3697 -1.6348 1.7047 39 1 -1.3484 -3.9041 5.6666 40 1 3.3777 -3.1669 -1.8825 41 1 4.8530 -2.0885 -1.6336 42 1 6.8243 -3.1520 -0.5773 43 1 6.2523 -5.8144 0.9785 44 1 7.9152 -5.1642 0.5160 45 1 7.4729 -3.0670 1.8735 46 1 5.8099 -3.7163 2.3360 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177339638.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:47:24 Heat of formation + Delta-G solvation = -14.672453 kcal Electronic energy + Delta-G solvation = -23322.161748 eV Core-core repulsion = 20212.428777 eV Total energy + Delta-G solvation = -3109.732971 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.42243 -39.12446 -38.25242 -36.07516 -35.43114 -34.37733 -30.66177 -28.20886 -28.08395 -27.01798 -26.11090 -24.49405 -23.40524 -23.07571 -20.94061 -20.46337 -19.26186 -19.18449 -18.11482 -17.17601 -16.57453 -16.48887 -15.91697 -15.69635 -15.21426 -15.13487 -14.76336 -14.66728 -14.26620 -13.99905 -13.73627 -13.38913 -13.29608 -13.05347 -12.76390 -12.58159 -12.56144 -12.45378 -12.42121 -12.30056 -12.19548 -11.84326 -11.80917 -11.73350 -11.67285 -11.53110 -11.42270 -10.88305 -10.84438 -10.65576 -10.46239 -9.32767 -8.37569 -6.42020 1.26219 1.30830 1.41816 1.65837 2.26500 2.28378 2.74123 2.96354 3.07078 3.57302 3.74563 3.78447 3.91393 3.94359 4.06680 4.16165 4.16799 4.27903 4.37836 4.51512 4.55970 4.61800 4.68009 4.79890 4.80959 4.81975 4.86528 4.92143 4.94349 5.00791 5.04222 5.09918 5.12731 5.15250 5.25237 5.25661 5.28937 5.38077 5.39095 5.44055 5.49297 5.56530 5.70667 6.23226 6.58652 6.74295 7.18332 7.45792 8.79887 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.013794 B = 0.006491 C = 0.004959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.418745 B = 4312.920056 C = 5644.565738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.081 4.081 3 C -0.130 4.130 4 C -0.138 4.138 5 C 0.113 3.887 6 N -0.589 5.589 7 C 0.231 3.769 8 C -0.536 4.536 9 H 0.023 0.977 10 C 0.012 3.988 11 N -0.945 5.945 12 Si 0.944 3.056 13 H -0.248 1.248 14 H -0.279 1.279 15 H -0.258 1.258 16 C 0.530 3.470 17 O -0.604 6.604 18 C -0.186 4.186 19 H 0.140 0.860 20 C -0.110 4.110 21 C -0.107 4.107 22 H 0.081 0.919 23 C -0.114 4.114 24 C -0.178 4.178 25 C -0.184 4.184 26 H 0.049 0.951 27 H 0.072 0.928 28 H 0.031 0.969 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.055 0.945 32 H 0.023 0.977 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.066 0.934 36 H 0.097 0.903 37 H 0.006 0.994 38 H 0.054 0.946 39 H 0.269 0.731 40 H 0.088 0.912 41 H 0.145 0.855 42 H 0.140 0.860 43 H 0.074 0.926 44 H 0.119 0.881 45 H 0.117 0.883 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.331 11.145 -15.311 22.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.083 4.083 3 C -0.187 4.187 4 C -0.196 4.196 5 C -0.009 4.009 6 N -0.317 5.317 7 C 0.108 3.892 8 C -0.575 4.575 9 H 0.042 0.958 10 C -0.186 4.186 11 N -0.585 5.585 12 Si 0.766 3.234 13 H -0.172 1.172 14 H -0.205 1.205 15 H -0.182 1.182 16 C 0.320 3.680 17 O -0.486 6.486 18 C -0.206 4.206 19 H 0.157 0.843 20 C -0.147 4.147 21 C -0.126 4.126 22 H 0.099 0.901 23 C -0.132 4.132 24 C -0.215 4.215 25 C -0.221 4.221 26 H 0.068 0.932 27 H 0.091 0.909 28 H 0.050 0.950 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.074 0.926 32 H 0.042 0.958 33 H 0.087 0.913 34 H 0.098 0.902 35 H 0.084 0.916 36 H 0.115 0.885 37 H 0.024 0.976 38 H 0.071 0.929 39 H 0.078 0.922 40 H 0.107 0.893 41 H 0.163 0.837 42 H 0.158 0.842 43 H 0.093 0.907 44 H 0.137 0.863 45 H 0.136 0.864 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 12.001 10.528 -15.193 22.038 hybrid contribution -1.347 -0.810 0.862 1.793 sum 10.654 9.718 -14.331 20.330 Atomic orbital electron populations 1.22008 0.95723 1.00746 1.01856 1.20967 0.95419 0.96950 0.94923 1.21746 1.01836 0.92630 1.02503 1.22026 1.02154 0.98695 0.96682 1.21940 1.00805 0.79749 0.98444 1.47780 1.17183 1.08288 1.58479 1.19304 0.82550 0.95495 0.91802 1.21590 0.93324 1.45182 0.97371 0.95844 1.25841 1.03799 0.93955 0.95019 1.70055 1.31439 1.46719 1.10273 0.85763 0.78559 0.79632 0.79398 1.17156 1.20456 1.18244 1.20329 0.87228 0.84060 0.76392 1.90607 1.77459 1.22531 1.58051 1.22317 0.92032 1.04408 1.01870 0.84250 1.23192 1.02271 1.00913 0.88289 1.21873 0.92785 0.94454 1.03441 0.90122 1.21816 0.92238 1.03020 0.96087 1.23057 1.02302 0.91892 1.04264 1.22994 1.03316 1.02019 0.93744 0.93201 0.90905 0.94993 0.90936 0.91113 0.92625 0.95806 0.91269 0.90163 0.91597 0.88527 0.97573 0.92864 0.92237 0.89348 0.83671 0.84229 0.90725 0.86264 0.86431 0.91600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.02 7.05 71.98 0.51 -3.51 16 2 C -0.08 -1.97 0.85 -52.18 -0.04 -2.01 16 3 C -0.13 -2.18 8.47 71.98 0.61 -1.57 16 4 C -0.14 -3.09 6.50 71.98 0.47 -2.62 16 5 C 0.11 3.51 4.54 86.38 0.39 3.90 16 6 N -0.59 -24.88 2.01 -826.18 -1.66 -26.54 16 7 C 0.23 11.77 3.11 85.63 0.27 12.04 16 8 C -0.54 -32.94 9.89 25.60 0.25 -32.69 16 9 H 0.02 1.62 8.06 -2.91 -0.02 1.59 16 10 C 0.01 0.72 5.47 84.66 0.46 1.18 16 11 N -0.94 -61.27 13.96 21.45 0.30 -60.97 16 12 Si 0.94 45.68 27.37 68.60 1.88 47.56 16 13 H -0.25 -10.87 7.11 99.48 0.71 -10.17 16 14 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 15 H -0.26 -12.15 6.69 99.48 0.67 -11.48 16 16 C 0.53 22.76 5.93 87.66 0.52 23.28 16 17 O -0.60 -32.51 15.91 -3.03 -0.05 -32.56 16 18 C -0.19 -5.49 3.78 -11.54 -0.04 -5.53 16 19 H 0.14 3.51 6.36 -2.39 -0.02 3.49 16 20 C -0.11 -2.39 7.20 30.62 0.22 -2.17 16 21 C -0.11 -2.92 5.38 -10.77 -0.06 -2.98 16 22 H 0.08 2.81 7.67 -2.39 -0.02 2.79 16 23 C -0.11 -2.33 5.87 -10.79 -0.06 -2.40 16 24 C -0.18 -3.77 10.25 30.62 0.31 -3.45 16 25 C -0.18 -4.09 10.18 30.62 0.31 -3.78 16 26 H 0.05 1.42 7.87 -2.39 -0.02 1.40 16 27 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.03 1.05 6.38 -2.39 -0.02 1.04 16 29 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.05 0.96 8.14 -2.39 -0.02 0.95 16 32 H 0.02 0.68 6.60 -2.39 -0.02 0.67 16 33 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.08 1.47 5.32 -2.39 -0.01 1.45 16 35 H 0.07 2.21 8.10 -2.39 -0.02 2.19 16 36 H 0.10 2.48 5.74 -2.39 -0.01 2.46 16 37 H 0.01 0.35 6.93 -2.39 -0.02 0.33 16 38 H 0.05 2.49 4.95 -2.39 -0.01 2.48 16 39 H 0.27 16.13 8.31 -92.70 -0.77 15.36 16 40 H 0.09 2.16 8.02 -2.38 -0.02 2.14 16 41 H 0.15 1.90 8.06 -2.39 -0.02 1.88 16 42 H 0.14 1.97 8.14 -2.39 -0.02 1.95 16 43 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 44 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16 45 H 0.12 2.00 8.14 -2.39 -0.02 1.98 16 46 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -79.94 354.42 5.48 -74.46 By element: Atomic # 1 Polarization: 19.46 SS G_CDS: 0.90 Total: 20.36 kcal Atomic # 6 Polarization: -26.42 SS G_CDS: 4.12 Total: -22.30 kcal Atomic # 7 Polarization: -86.15 SS G_CDS: -1.36 Total: -87.51 kcal Atomic # 8 Polarization: -32.51 SS G_CDS: -0.05 Total: -32.56 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 1.88 Total: 47.56 kcal Total: -79.94 5.48 -74.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177339638.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.784 kcal (2) G-P(sol) polarization free energy of solvation -79.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds