Wall clock time and date at job start Tue Mar 31 2020 01:47:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47113 * 2 1 4 4 C 1.53001 * 109.46908 * 240.00434 * 2 1 3 5 5 C 1.52991 * 109.47090 * 120.00078 * 2 1 3 6 6 N 1.46497 * 109.47420 * 54.65500 * 5 2 1 7 7 C 1.46499 * 120.00536 * 86.94582 * 6 5 2 8 8 C 1.50703 * 109.47207 * 95.59848 * 7 6 5 9 9 H 1.07999 * 119.99529 * 4.84898 * 8 7 6 10 10 C 1.37872 * 119.99931 * 184.85100 * 8 7 6 11 11 N 1.31511 * 120.00177 * 359.97438 * 10 8 7 12 12 Si 1.86802 * 119.99914 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.46853 * 359.97438 * 12 10 8 14 14 H 1.48497 * 109.47104 * 119.99693 * 12 10 8 15 15 H 1.48500 * 109.47015 * 239.99671 * 12 10 8 16 16 C 1.34779 * 119.99703 * 266.95000 * 6 5 2 17 17 O 1.21291 * 119.99820 * 184.32678 * 16 6 5 18 18 C 1.50701 * 120.00326 * 4.32746 * 16 6 5 19 19 H 1.08995 * 115.54745 * 2.23689 * 18 16 6 20 20 C 1.52999 * 117.49658 * 147.89984 * 18 16 6 21 21 C 1.52992 * 117.50149 * 216.56440 * 18 16 6 22 22 H 1.08997 * 117.50153 * 145.01952 * 21 18 16 23 23 C 1.53004 * 117.49711 * 0.02562 * 21 18 16 24 24 C 1.52996 * 117.49684 * 128.62465 * 23 21 18 25 25 C 1.52994 * 117.49842 * 60.00297 * 23 21 18 26 26 H 1.09002 * 109.46923 * 304.15083 * 1 2 3 27 27 H 1.09004 * 109.46889 * 64.15002 * 1 2 3 28 28 H 1.09001 * 109.47406 * 184.15330 * 1 2 3 29 29 H 1.08994 * 109.47145 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47182 * 300.00242 * 3 2 1 31 31 H 1.09001 * 109.46944 * 60.00107 * 3 2 1 32 32 H 1.08996 * 109.47176 * 307.95260 * 4 2 1 33 33 H 1.08994 * 109.47277 * 67.95943 * 4 2 1 34 34 H 1.09004 * 109.46482 * 187.95922 * 4 2 1 35 35 H 1.09003 * 109.47114 * 174.65176 * 5 2 1 36 36 H 1.09005 * 109.47600 * 294.65145 * 5 2 1 37 37 H 1.08993 * 109.47352 * 215.60242 * 7 6 5 38 38 H 1.09001 * 109.46707 * 335.60375 * 7 6 5 39 39 H 0.97001 * 120.00256 * 180.02562 * 11 10 8 40 40 H 1.09008 * 117.49757 * 214.97901 * 20 18 16 41 41 H 1.09000 * 117.50386 * 0.02562 * 20 18 16 42 42 H 1.09000 * 115.55271 * 274.32778 * 23 21 18 43 43 H 1.08999 * 117.50238 * 359.97438 * 24 23 21 44 44 H 1.09001 * 117.50371 * 145.02008 * 24 23 21 45 45 H 1.09002 * 117.50187 * 214.97678 * 25 23 21 46 46 H 1.08997 * 117.50236 * 359.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0400 -0.7212 1.2492 6 7 1.4495 -2.0603 1.3153 7 6 2.0949 -3.1804 0.6261 8 6 2.9749 -3.9268 1.5955 9 1 2.9863 -3.6484 2.6389 10 6 3.7653 -4.9650 1.1503 11 7 3.7511 -5.3043 -0.1202 12 14 4.8556 -5.8906 2.3520 13 1 4.6898 -5.3186 3.7124 14 1 4.4697 -7.3245 2.3670 15 1 6.2742 -5.7641 1.9318 16 6 0.3123 -2.2617 2.0101 17 8 -0.1342 -3.3830 2.1306 18 6 -0.4045 -1.0938 2.6372 19 1 0.0389 -0.1155 2.4518 20 6 -1.9294 -1.1710 2.7355 21 6 -1.0722 -1.3210 3.9949 22 1 -1.0683 -0.4921 4.7027 23 6 -0.9604 -2.7164 4.6124 24 6 -0.4620 -2.8124 6.0557 25 6 0.4437 -3.2500 4.9029 26 1 -0.3633 0.5769 0.8505 27 1 -0.3633 0.4481 -0.9249 28 1 -0.3634 -1.0250 0.0744 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.5652 -1.6995 -1.3233 33 1 1.7975 -0.1318 -2.1335 34 1 3.1207 -0.8460 -1.1810 35 1 3.1258 -0.8049 1.2026 36 1 1.7570 -0.1551 2.1367 37 1 1.3326 -3.8540 0.2346 38 1 2.7010 -2.8003 -0.1962 39 1 4.3069 -6.0349 -0.4334 40 1 -2.4891 -0.2434 2.6154 41 1 -2.4142 -2.0667 2.3471 42 1 -1.7152 -3.4343 4.2915 43 1 -0.2133 -1.8815 6.5652 44 1 -0.8889 -3.5935 6.6848 45 1 0.6127 -4.3190 4.7735 46 1 1.2880 -2.6072 4.6538 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177339655.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:47:28 Heat of formation + Delta-G solvation = -9.337840 kcal Electronic energy + Delta-G solvation = -23756.226490 eV Core-core repulsion = 20646.724845 eV Total energy + Delta-G solvation = -3109.501645 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.40229 -39.11078 -37.89870 -36.03627 -35.38777 -34.23223 -30.04497 -28.25052 -28.06317 -26.89728 -25.99138 -24.62717 -23.43956 -23.04513 -21.28993 -20.34144 -18.97103 -18.52591 -18.08758 -17.06397 -16.58880 -16.23240 -16.05047 -15.55136 -15.13768 -15.07977 -14.70210 -14.43022 -14.28535 -14.02824 -13.52044 -13.19717 -13.13344 -13.00087 -12.75451 -12.58405 -12.52839 -12.43795 -12.42215 -12.26522 -12.16628 -11.97385 -11.76185 -11.65330 -11.62159 -11.50238 -11.34316 -10.80711 -10.62470 -10.57010 -10.23100 -9.23076 -8.20163 -6.33019 1.31228 1.33628 1.45411 1.79931 2.32403 2.51341 2.89023 3.08141 3.13090 3.63485 3.81921 3.91996 3.93397 3.97619 4.05182 4.17282 4.24420 4.30216 4.44832 4.53385 4.56837 4.63195 4.79007 4.80033 4.84212 4.90707 4.95047 4.95531 5.01198 5.06482 5.12073 5.15173 5.19052 5.24876 5.27225 5.28920 5.30824 5.40014 5.40262 5.50736 5.58013 5.64753 5.96277 6.13913 6.75490 6.96752 7.32479 7.69526 8.85690 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.011488 B = 0.008438 C = 0.005437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2436.748835 B = 3317.587636 C = 5149.019599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.083 4.083 3 C -0.130 4.130 4 C -0.137 4.137 5 C 0.116 3.884 6 N -0.598 5.598 7 C 0.270 3.730 8 C -0.528 4.528 9 H 0.045 0.955 10 C 0.008 3.992 11 N -0.929 5.929 12 Si 0.958 3.042 13 H -0.271 1.271 14 H -0.283 1.283 15 H -0.268 1.268 16 C 0.532 3.468 17 O -0.585 6.585 18 C -0.196 4.196 19 H 0.148 0.852 20 C -0.129 4.129 21 C -0.090 4.090 22 H 0.148 0.852 23 C -0.114 4.114 24 C -0.152 4.152 25 C -0.182 4.182 26 H 0.080 0.920 27 H 0.062 0.938 28 H 0.025 0.975 29 H 0.054 0.946 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.025 0.975 33 H 0.068 0.932 34 H 0.042 0.958 35 H 0.062 0.938 36 H 0.096 0.904 37 H -0.020 1.020 38 H 0.035 0.965 39 H 0.265 0.735 40 H 0.141 0.859 41 H 0.076 0.924 42 H 0.084 0.916 43 H 0.117 0.883 44 H 0.100 0.900 45 H 0.056 0.944 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.784 17.124 6.039 19.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.084 4.084 3 C -0.187 4.187 4 C -0.194 4.194 5 C -0.007 4.007 6 N -0.327 5.327 7 C 0.148 3.852 8 C -0.567 4.567 9 H 0.063 0.937 10 C -0.190 4.190 11 N -0.569 5.569 12 Si 0.783 3.217 13 H -0.195 1.195 14 H -0.209 1.209 15 H -0.194 1.194 16 C 0.322 3.678 17 O -0.465 6.465 18 C -0.216 4.216 19 H 0.166 0.834 20 C -0.166 4.166 21 C -0.108 4.108 22 H 0.165 0.835 23 C -0.133 4.133 24 C -0.188 4.188 25 C -0.219 4.219 26 H 0.099 0.901 27 H 0.081 0.919 28 H 0.044 0.956 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.045 0.955 33 H 0.087 0.913 34 H 0.061 0.939 35 H 0.081 0.919 36 H 0.114 0.886 37 H -0.002 1.002 38 H 0.053 0.947 39 H 0.074 0.926 40 H 0.159 0.841 41 H 0.094 0.906 42 H 0.102 0.898 43 H 0.135 0.865 44 H 0.119 0.881 45 H 0.075 0.925 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.906 16.409 5.958 19.164 hybrid contribution 1.015 -1.670 -0.166 1.962 sum -6.891 14.738 5.791 17.270 Atomic orbital electron populations 1.21980 0.93936 1.00609 1.02767 1.20984 0.96563 0.96557 0.94277 1.21756 1.01096 0.92691 1.03174 1.21896 1.00110 0.99377 0.98045 1.21816 0.97988 0.82083 0.98763 1.47992 1.24403 1.09838 1.50497 1.18689 0.90554 0.83987 0.91927 1.21719 1.23579 1.16422 0.94934 0.93652 1.25752 0.98567 0.97813 0.96912 1.70046 1.41345 1.30055 1.15486 0.85507 0.78798 0.78201 0.79178 1.19517 1.20892 1.19355 1.20080 0.80487 0.89430 0.77845 1.90626 1.67807 1.26977 1.61114 1.22674 0.97361 0.98639 1.02944 0.83414 1.23099 0.89683 1.04321 0.99527 1.21984 1.02538 0.96716 0.89570 0.83487 1.21559 0.96859 0.96590 0.98244 1.23153 1.01808 1.03800 0.90072 1.22534 0.94459 0.99574 1.05355 0.90092 0.91858 0.95580 0.92642 0.91323 0.90663 0.95542 0.91348 0.93863 0.91947 0.88614 1.00191 0.94721 0.92623 0.84112 0.90557 0.89800 0.86490 0.88142 0.92491 0.90985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.32 6.90 71.98 0.50 -2.82 16 2 C -0.08 -2.17 0.85 -52.18 -0.04 -2.21 16 3 C -0.13 -2.37 8.47 71.98 0.61 -1.76 16 4 C -0.14 -4.35 7.12 71.98 0.51 -3.84 16 5 C 0.12 3.74 4.43 86.38 0.38 4.13 16 6 N -0.60 -25.71 1.97 -826.16 -1.63 -27.34 16 7 C 0.27 14.85 4.07 85.63 0.35 15.19 16 8 C -0.53 -31.44 9.34 25.60 0.24 -31.20 16 9 H 0.05 2.74 7.81 -2.91 -0.02 2.72 16 10 C 0.01 0.47 5.46 84.65 0.46 0.93 16 11 N -0.93 -57.44 13.29 21.44 0.28 -57.15 16 12 Si 0.96 46.78 29.54 68.60 2.03 48.81 16 13 H -0.27 -12.98 7.11 99.48 0.71 -12.27 16 14 H -0.28 -13.71 7.11 99.48 0.71 -13.00 16 15 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 16 C 0.53 22.22 4.86 87.66 0.43 22.65 16 17 O -0.58 -30.29 13.80 -3.06 -0.04 -30.34 16 18 C -0.20 -5.52 3.63 -11.54 -0.04 -5.56 16 19 H 0.15 3.24 4.34 -2.39 -0.01 3.22 16 20 C -0.13 -3.05 9.79 30.62 0.30 -2.75 16 21 C -0.09 -2.22 5.87 -10.77 -0.06 -2.28 16 22 H 0.15 2.53 8.14 -2.39 -0.02 2.51 16 23 C -0.11 -3.57 4.27 -10.80 -0.05 -3.61 16 24 C -0.15 -3.91 10.25 30.59 0.31 -3.59 16 25 C -0.18 -6.70 8.34 30.59 0.26 -6.44 16 26 H 0.08 1.52 6.16 -2.39 -0.01 1.51 16 27 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 28 H 0.03 0.82 5.95 -2.39 -0.01 0.81 16 29 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.03 1.02 6.44 -2.39 -0.02 1.01 16 33 H 0.07 1.80 8.13 -2.39 -0.02 1.78 16 34 H 0.04 1.45 7.97 -2.39 -0.02 1.43 16 35 H 0.06 2.19 8.08 -2.39 -0.02 2.17 16 36 H 0.10 2.47 6.07 -2.38 -0.01 2.46 16 37 H -0.02 -1.28 7.66 -2.39 -0.02 -1.30 16 38 H 0.03 1.94 5.90 -2.39 -0.01 1.92 16 39 H 0.26 15.37 8.31 -92.71 -0.77 14.59 16 40 H 0.14 2.12 8.14 -2.38 -0.02 2.11 16 41 H 0.08 2.25 8.01 -2.39 -0.02 2.23 16 42 H 0.08 2.94 8.14 -2.39 -0.02 2.92 16 43 H 0.12 2.36 8.14 -2.39 -0.02 2.34 16 44 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 45 H 0.06 2.45 8.14 -2.39 -0.02 2.44 16 46 H 0.07 2.84 8.06 -2.39 -0.02 2.82 16 Total: -1.00 -75.35 353.90 5.72 -69.62 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: 0.94 Total: 19.58 kcal Atomic # 6 Polarization: -27.33 SS G_CDS: 4.15 Total: -23.18 kcal Atomic # 7 Polarization: -83.15 SS G_CDS: -1.35 Total: -84.49 kcal Atomic # 8 Polarization: -30.29 SS G_CDS: -0.04 Total: -30.34 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 2.03 Total: 48.81 kcal Total: -75.35 5.72 -69.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177339655.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.287 kcal (2) G-P(sol) polarization free energy of solvation -75.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds