Wall clock time and date at job start Tue Mar 31 2020 02:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47162 * 2 1 4 4 H 1.09007 * 109.46879 * 304.99691 * 3 2 1 5 5 C 1.50701 * 109.47441 * 184.99946 * 3 2 1 6 6 H 1.07997 * 120.00389 * 240.00148 * 5 3 2 7 7 C 1.37879 * 120.00027 * 59.99690 * 5 3 2 8 8 N 1.31519 * 119.99899 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00180 * 180.02562 * 7 5 3 10 10 H 1.48505 * 109.46800 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46893 * 119.99620 * 9 7 5 12 12 H 1.48499 * 109.47272 * 240.00130 * 9 7 5 13 13 N 1.46498 * 109.47457 * 64.99399 * 3 2 1 14 14 C 1.34766 * 120.00564 * 275.00596 * 13 3 2 15 15 O 1.21290 * 119.99858 * 359.97438 * 14 13 3 16 16 C 1.50700 * 120.00408 * 179.97438 * 14 13 3 17 17 H 1.08997 * 115.56069 * 81.67296 * 16 14 13 18 18 C 1.53002 * 117.49671 * 295.98430 * 16 14 13 19 19 C 1.53005 * 60.00152 * 252.50922 * 18 16 14 20 20 H 1.09001 * 117.50018 * 252.51364 * 19 18 16 21 21 C 1.52999 * 117.50076 * 107.51116 * 19 18 16 22 22 C 1.52993 * 109.47537 * 185.47168 * 21 19 18 23 23 C 1.52999 * 109.47537 * 180.02562 * 22 21 19 24 24 C 1.53005 * 109.47003 * 59.99563 * 23 22 21 25 25 C 1.52993 * 109.47331 * 300.00564 * 24 23 22 26 26 C 1.52999 * 109.47537 * 59.99763 * 25 24 23 27 27 H 1.08997 * 109.47096 * 60.00369 * 1 2 3 28 28 H 1.09004 * 109.46819 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47017 * 300.00216 * 1 2 3 30 30 H 1.09000 * 109.47507 * 239.99306 * 2 1 3 31 31 H 1.09010 * 109.47159 * 119.99360 * 2 1 3 32 32 H 0.97003 * 120.00043 * 179.97438 * 8 7 5 33 33 H 0.97008 * 119.99630 * 94.99883 * 13 3 2 34 34 H 1.08996 * 117.49684 * 145.02402 * 18 16 14 35 35 H 1.09002 * 117.49901 * 359.97438 * 18 16 14 36 36 H 1.09005 * 109.47317 * 305.47677 * 21 19 18 37 37 H 1.09005 * 109.47233 * 300.00560 * 22 21 19 38 38 H 1.09000 * 109.46880 * 60.00188 * 22 21 19 39 39 H 1.08999 * 109.46883 * 300.00577 * 23 22 21 40 40 H 1.08998 * 109.47683 * 179.97438 * 23 22 21 41 41 H 1.08998 * 109.46906 * 179.97438 * 24 23 22 42 42 H 1.09005 * 109.46312 * 60.00331 * 24 23 22 43 43 H 1.08999 * 109.47079 * 299.99891 * 25 24 23 44 44 H 1.09000 * 109.46880 * 179.97438 * 25 24 23 45 45 H 1.08998 * 109.47683 * 180.02562 * 26 25 24 46 46 H 1.09005 * 109.47317 * 59.99491 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2279 8 7 3.4063 0.3365 -2.1728 9 14 6.0050 0.8801 -1.3811 10 1 6.5988 1.5443 -0.1930 11 1 6.4962 -0.5190 -1.4625 12 1 6.4000 1.6157 -2.6091 13 7 1.6524 2.0976 1.2517 14 6 0.4351 2.6644 1.3669 15 8 -0.3393 2.6326 0.4340 16 6 0.0362 3.3378 2.6547 17 1 0.3994 4.3572 2.7845 18 6 -0.0741 2.4625 3.9048 19 6 -1.3395 2.9990 3.2324 20 1 -1.8813 3.7956 3.7423 21 6 -2.2051 2.0024 2.4588 22 6 -3.3377 2.7508 1.7532 23 6 -4.2037 1.7542 0.9801 24 6 -4.7959 0.7318 1.9523 25 6 -3.6634 -0.0166 2.6579 26 6 -2.7974 0.9800 3.4309 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8901 32 1 3.8294 -0.0613 -2.9498 33 1 2.2719 2.1232 1.9978 34 1 0.2164 2.9063 4.8570 35 1 0.1415 1.3996 3.7956 36 1 -1.5930 1.4877 1.7182 37 1 -3.9499 3.2655 2.4938 38 1 -2.9157 3.4794 1.0609 39 1 -3.5918 1.2392 0.2396 40 1 -5.0109 2.2873 0.4778 41 1 -5.4133 0.0221 1.4016 42 1 -5.4078 1.2469 2.6929 43 1 -3.0515 -0.5315 1.9173 44 1 -4.0854 -0.7446 3.3507 45 1 -1.9902 0.4469 3.9333 46 1 -3.4093 1.4951 4.1715 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183967888.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:54:45 Heat of formation + Delta-G solvation = -51.208947 kcal Electronic energy + Delta-G solvation = -23367.089284 eV Core-core repulsion = 20255.771972 eV Total energy + Delta-G solvation = -3111.317312 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.90872 -38.07357 -36.01333 -34.80195 -32.30000 -31.02269 -30.55702 -30.12810 -27.05652 -24.11768 -23.31643 -22.81014 -22.21246 -20.53818 -19.70238 -19.60228 -19.03161 -16.92185 -16.12148 -15.35793 -15.22140 -14.91556 -14.34510 -14.02866 -13.91561 -13.79747 -13.56200 -12.95473 -12.69299 -12.48556 -12.17612 -11.96281 -11.83150 -11.60827 -11.44457 -11.24632 -11.01106 -10.96091 -10.89921 -10.82858 -10.43129 -10.34421 -10.32081 -10.17474 -9.98210 -9.74601 -9.56386 -9.51325 -9.01624 -8.79784 -8.47843 -7.75148 -6.11265 -4.20292 3.23873 3.31901 3.34468 3.45422 3.78264 4.18918 4.41017 4.67602 4.89152 4.92436 5.05729 5.09084 5.19633 5.28030 5.46246 5.50616 5.59272 5.70373 5.71651 5.72679 5.79048 5.82618 5.87012 5.95578 6.13184 6.17674 6.19992 6.30073 6.34812 6.40017 6.40956 6.46000 6.52062 6.63653 6.66476 6.81824 7.11896 7.23215 7.40318 7.51101 7.64742 7.77139 7.93331 8.20591 8.74409 8.81609 9.22090 9.47908 10.94048 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.025943 B = 0.004623 C = 0.004279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.011111 B = 6055.243272 C = 6542.300907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.126 4.126 3 C 0.270 3.730 4 H 0.048 0.952 5 C -0.533 4.533 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.899 3.101 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.705 5.705 14 C 0.530 3.470 15 O -0.541 6.541 16 C -0.181 4.181 17 H 0.121 0.879 18 C -0.167 4.167 19 C -0.115 4.115 20 H 0.103 0.897 21 C -0.070 4.070 22 C -0.101 4.101 23 C -0.119 4.119 24 C -0.117 4.117 25 C -0.120 4.120 26 C -0.110 4.110 27 H 0.049 0.951 28 H 0.021 0.979 29 H 0.044 0.956 30 H 0.098 0.902 31 H 0.029 0.971 32 H 0.263 0.737 33 H 0.388 0.612 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.050 0.950 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.055 0.945 41 H 0.056 0.944 42 H 0.056 0.944 43 H 0.063 0.937 44 H 0.056 0.944 45 H 0.058 0.942 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.220 2.094 11.650 16.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.165 4.165 3 C 0.168 3.832 4 H 0.066 0.934 5 C -0.571 4.571 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.727 3.273 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.353 5.353 14 C 0.314 3.686 15 O -0.419 6.419 16 C -0.202 4.202 17 H 0.139 0.861 18 C -0.204 4.204 19 C -0.134 4.134 20 H 0.121 0.879 21 C -0.088 4.088 22 C -0.139 4.139 23 C -0.157 4.157 24 C -0.154 4.154 25 C -0.158 4.158 26 C -0.147 4.147 27 H 0.068 0.932 28 H 0.040 0.960 29 H 0.062 0.938 30 H 0.116 0.884 31 H 0.048 0.952 32 H 0.073 0.927 33 H 0.220 0.780 34 H 0.115 0.885 35 H 0.116 0.884 36 H 0.116 0.884 37 H 0.068 0.932 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.082 0.918 44 H 0.074 0.926 45 H 0.077 0.923 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.736 1.956 10.764 16.044 hybrid contribution 1.436 0.075 0.292 1.467 sum -10.300 2.032 11.057 15.247 Atomic orbital electron populations 1.21919 0.98396 0.97953 1.01372 1.21921 0.92595 0.99872 1.02149 1.18763 0.94110 0.89124 0.81163 0.93406 1.21290 0.90849 1.38771 1.06203 0.92101 1.24883 0.98525 0.94848 0.95416 1.69909 1.34982 1.37762 1.09356 0.86426 0.85011 0.77754 0.78104 1.19756 1.20900 1.20900 1.46497 1.14668 1.55732 1.18362 1.19411 0.82616 0.78908 0.87644 1.90660 1.51453 1.59719 1.40102 1.22427 1.02755 1.00874 0.94155 0.86102 1.23031 1.01913 0.99935 0.95513 1.22301 0.88873 1.01059 1.01141 0.87880 1.20987 0.96203 0.94717 0.96848 1.21396 0.95857 0.97803 0.98811 1.21512 0.98930 0.97151 0.98089 1.21522 0.97471 0.98024 0.98425 1.21529 0.97232 0.97697 0.99321 1.21537 0.98725 0.96752 0.97711 0.93191 0.96037 0.93767 0.88395 0.95187 0.92669 0.78004 0.88527 0.88406 0.88371 0.93162 0.91322 0.91563 0.92586 0.92573 0.92513 0.91834 0.92550 0.92326 0.92547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 8.52 37.16 0.32 -2.73 16 2 C -0.13 -3.05 5.45 -26.73 -0.15 -3.20 16 3 C 0.27 6.73 2.24 -69.08 -0.15 6.58 16 4 H 0.05 1.39 7.58 -51.93 -0.39 1.00 16 5 C -0.53 -14.03 8.73 -34.44 -0.30 -14.33 16 6 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.70 11.29 55.43 0.63 -24.08 16 9 Si 0.90 20.61 29.54 -169.99 -5.02 15.59 16 10 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 13 N -0.71 -14.45 5.02 -54.93 -0.28 -14.73 16 14 C 0.53 10.21 5.28 -10.99 -0.06 10.15 16 15 O -0.54 -12.05 12.48 5.55 0.07 -11.98 16 16 C -0.18 -2.65 6.14 -91.77 -0.56 -3.21 16 17 H 0.12 1.59 8.14 -51.93 -0.42 1.16 16 18 C -0.17 -2.03 9.52 -26.73 -0.25 -2.28 16 19 C -0.12 -1.49 5.06 -90.61 -0.46 -1.95 16 20 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 21 C -0.07 -0.97 1.70 -90.62 -0.15 -1.13 16 22 C -0.10 -1.37 5.20 -26.74 -0.14 -1.50 16 23 C -0.12 -1.54 5.92 -26.73 -0.16 -1.69 16 24 C -0.12 -1.31 5.92 -26.73 -0.16 -1.47 16 25 C -0.12 -1.42 5.92 -26.74 -0.16 -1.58 16 26 C -0.11 -1.32 5.10 -26.73 -0.14 -1.46 16 27 H 0.05 1.17 7.85 -51.93 -0.41 0.77 16 28 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.04 0.92 3.76 -51.93 -0.20 0.72 16 30 H 0.10 2.63 5.95 -51.93 -0.31 2.32 16 31 H 0.03 0.69 8.14 -51.92 -0.42 0.27 16 32 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 33 H 0.39 7.10 8.54 -40.82 -0.35 6.75 16 34 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.10 1.28 7.96 -51.93 -0.41 0.87 16 36 H 0.10 1.71 3.68 -51.93 -0.19 1.52 16 37 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.06 0.71 7.67 -51.93 -0.40 0.31 16 46 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 348.67 15.07 5.25 5.25 Total: -1.00 -28.41 348.67 -10.08 -38.49 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: -8.12 Total: 9.57 kcal Atomic # 6 Polarization: -15.50 SS G_CDS: -2.62 Total: -18.12 kcal Atomic # 7 Polarization: -39.15 SS G_CDS: 0.35 Total: -38.80 kcal Atomic # 8 Polarization: -12.05 SS G_CDS: 0.07 Total: -11.98 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -28.41 -10.08 -38.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183967888.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.715 kcal (2) G-P(sol) polarization free energy of solvation -28.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds