Wall clock time and date at job start Tue Mar 31 2020 02:54:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46769 * 2 1 4 4 H 1.09007 * 109.47145 * 304.99277 * 3 2 1 5 5 C 1.50707 * 109.47112 * 185.00130 * 3 2 1 6 6 H 1.07998 * 120.00049 * 239.99769 * 5 3 2 7 7 C 1.37881 * 119.99925 * 59.99507 * 5 3 2 8 8 N 1.31517 * 119.99779 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 119.99556 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47510 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47200 * 120.00398 * 9 7 5 12 12 H 1.48505 * 109.46878 * 239.99713 * 9 7 5 13 13 N 1.46497 * 109.47313 * 65.00173 * 3 2 1 14 14 C 1.34777 * 119.99525 * 274.99614 * 13 3 2 15 15 O 1.21283 * 120.00463 * 0.02562 * 14 13 3 16 16 C 1.50700 * 119.99675 * 179.72583 * 14 13 3 17 17 H 1.09000 * 115.55056 * 325.94110 * 16 14 13 18 18 C 1.53002 * 117.50158 * 111.65860 * 16 14 13 19 19 C 1.52998 * 60.00121 * 107.49017 * 18 16 14 20 20 H 1.09007 * 117.49849 * 252.51216 * 19 18 16 21 21 C 1.52991 * 117.51853 * 107.48555 * 19 18 16 22 22 C 1.53003 * 109.47248 * 231.36837 * 21 19 18 23 23 C 1.52996 * 109.47562 * 180.02562 * 22 21 19 24 24 C 1.53006 * 109.47069 * 59.99683 * 23 22 21 25 25 C 1.52994 * 109.47287 * 300.00513 * 24 23 22 26 26 C 1.52996 * 109.47485 * 59.99742 * 25 24 23 27 27 H 1.09001 * 109.46770 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47199 * 299.99670 * 1 2 3 29 29 H 1.08992 * 109.47177 * 60.00686 * 1 2 3 30 30 H 1.09005 * 109.47412 * 240.00234 * 2 1 3 31 31 H 1.09001 * 109.47746 * 119.99475 * 2 1 3 32 32 H 0.97001 * 119.99544 * 179.97438 * 8 7 5 33 33 H 0.97000 * 120.00580 * 95.00360 * 13 3 2 34 34 H 1.08997 * 117.49663 * 214.97926 * 18 16 14 35 35 H 1.09000 * 117.49678 * 359.97438 * 18 16 14 36 36 H 1.08997 * 109.47493 * 351.36982 * 21 19 18 37 37 H 1.09005 * 109.46769 * 300.00370 * 22 21 19 38 38 H 1.09001 * 109.47264 * 59.99874 * 22 21 19 39 39 H 1.09000 * 109.46919 * 300.00555 * 23 22 21 40 40 H 1.08997 * 109.47505 * 180.02562 * 23 22 21 41 41 H 1.08998 * 109.47238 * 180.02562 * 24 23 22 42 42 H 1.09000 * 109.46538 * 60.00639 * 24 23 22 43 43 H 1.09009 * 109.47211 * 299.99659 * 25 24 23 44 44 H 1.09001 * 109.47364 * 179.97438 * 25 24 23 45 45 H 1.08997 * 109.47505 * 180.02562 * 26 25 24 46 46 H 1.08997 * 109.47275 * 59.99871 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8419 5 6 3.5419 1.4444 -0.1239 6 1 4.1471 1.8891 0.6522 7 6 4.1432 0.8785 -1.2280 8 7 3.4061 0.3374 -2.1733 9 14 6.0049 0.8802 -1.3811 10 1 6.5987 1.5455 -0.1937 11 1 6.4962 -0.5188 -1.4626 12 1 6.3999 1.6158 -2.6092 13 7 1.6523 2.0975 1.2518 14 6 0.4350 2.6644 1.3668 15 8 -0.3397 2.6319 0.4343 16 6 0.0340 3.3328 2.6566 17 1 0.4286 2.8770 3.5648 18 6 -0.1303 4.8539 2.6428 19 6 -1.3634 3.9520 2.7268 20 1 -1.9926 3.8760 1.8399 21 6 -2.0997 3.8843 4.0661 22 6 -2.2852 2.4210 4.4727 23 6 -3.0221 2.3531 5.8118 24 6 -4.3915 3.0219 5.6748 25 6 -4.2060 4.4851 5.2682 26 6 -3.4691 4.5530 3.9291 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5137 0.8900 32 1 3.8292 -0.0604 -2.9502 33 1 2.2718 2.1233 1.9978 34 1 0.1565 5.3992 3.5419 35 1 0.0521 5.3712 1.7009 36 1 -1.5168 4.4020 4.8278 37 1 -2.8681 1.9033 3.7109 38 1 -1.3097 1.9444 4.5699 39 1 -2.4396 2.8710 6.5737 40 1 -3.1538 1.3107 6.1017 41 1 -4.9163 2.9740 6.6289 42 1 -4.9740 2.5041 4.9129 43 1 -3.6234 5.0030 6.0302 44 1 -5.1815 4.9615 5.1701 45 1 -3.3366 5.5954 3.6397 46 1 -4.0516 4.0352 3.1671 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183967923.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:54:49 Heat of formation + Delta-G solvation = -71.486364 kcal Electronic energy + Delta-G solvation = -22405.700005 eV Core-core repulsion = 19293.503398 eV Total energy + Delta-G solvation = -3112.196607 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.10249 -39.62774 -37.42487 -36.41154 -34.27319 -32.79989 -31.59046 -31.30371 -29.08022 -25.84785 -24.56298 -24.04280 -23.33849 -21.87123 -21.19854 -20.78419 -20.57175 -18.90972 -17.63807 -17.21063 -16.46125 -16.21917 -16.10191 -15.28231 -15.19488 -14.98298 -14.83120 -14.60425 -14.08914 -13.85093 -13.52255 -13.42438 -13.31903 -13.17166 -12.97564 -12.88913 -12.71514 -12.57194 -12.16226 -12.08539 -11.95132 -11.92376 -11.62383 -11.42201 -11.36463 -11.24705 -11.05278 -10.79549 -10.69255 -10.58103 -10.45730 -9.61030 -8.17169 -6.34672 1.43019 1.44056 1.56145 1.74976 2.34887 2.62583 2.95065 3.12346 3.64832 3.80706 3.88557 3.99126 4.08264 4.14951 4.33159 4.42522 4.46462 4.49683 4.55003 4.61511 4.67638 4.70360 4.73313 4.75963 4.78638 4.86722 5.01432 5.03440 5.08762 5.22680 5.24161 5.26856 5.32981 5.35485 5.41453 5.42658 5.46107 5.53492 5.55216 5.63922 5.68177 5.78548 5.93535 6.16218 6.74190 7.03769 7.33077 7.63221 8.88480 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.033224 B = 0.003459 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.553965 B = 8092.715304 C = 8338.345934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.120 4.120 3 C 0.278 3.722 4 H -0.005 1.005 5 C -0.547 4.547 6 H 0.071 0.929 7 C 0.014 3.986 8 N -0.916 5.916 9 Si 0.971 3.029 10 H -0.260 1.260 11 H -0.278 1.278 12 H -0.284 1.284 13 N -0.703 5.703 14 C 0.523 3.477 15 O -0.593 6.593 16 C -0.190 4.190 17 H 0.143 0.857 18 C -0.136 4.136 19 C -0.111 4.111 20 H 0.086 0.914 21 C -0.045 4.045 22 C -0.115 4.115 23 C -0.116 4.116 24 C -0.121 4.121 25 C -0.115 4.115 26 C -0.112 4.112 27 H 0.045 0.955 28 H 0.043 0.957 29 H 0.023 0.977 30 H 0.071 0.929 31 H 0.041 0.959 32 H 0.265 0.735 33 H 0.403 0.597 34 H 0.135 0.865 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.043 0.957 38 H 0.059 0.941 39 H 0.071 0.929 40 H 0.061 0.939 41 H 0.071 0.929 42 H 0.051 0.949 43 H 0.071 0.929 44 H 0.067 0.933 45 H 0.068 0.932 46 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.543 7.217 18.282 22.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.159 4.159 3 C 0.174 3.826 4 H 0.012 0.988 5 C -0.586 4.586 6 H 0.089 0.911 7 C -0.186 4.186 8 N -0.554 5.554 9 Si 0.796 3.204 10 H -0.184 1.184 11 H -0.204 1.204 12 H -0.210 1.210 13 N -0.351 5.351 14 C 0.311 3.689 15 O -0.475 6.475 16 C -0.211 4.211 17 H 0.160 0.840 18 C -0.173 4.173 19 C -0.130 4.130 20 H 0.104 0.896 21 C -0.063 4.063 22 C -0.153 4.153 23 C -0.153 4.153 24 C -0.159 4.159 25 C -0.152 4.152 26 C -0.150 4.150 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.042 0.958 30 H 0.090 0.910 31 H 0.059 0.941 32 H 0.074 0.926 33 H 0.237 0.763 34 H 0.153 0.847 35 H 0.099 0.901 36 H 0.107 0.893 37 H 0.062 0.938 38 H 0.077 0.923 39 H 0.090 0.910 40 H 0.080 0.920 41 H 0.090 0.910 42 H 0.070 0.930 43 H 0.090 0.910 44 H 0.086 0.914 45 H 0.086 0.914 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -11.051 7.084 17.439 21.827 hybrid contribution 1.197 -0.391 -0.756 1.468 sum -9.854 6.693 16.683 20.500 Atomic orbital electron populations 1.21663 0.97068 0.99043 1.00165 1.21779 0.93666 0.99240 1.01247 1.18352 0.93648 0.89110 0.81444 0.98759 1.21619 0.91423 1.38822 1.06696 0.91082 1.25799 1.03432 0.94370 0.95008 1.70064 1.37027 1.38445 1.09873 0.85307 0.79010 0.77859 0.78218 1.18387 1.20382 1.21021 1.46217 1.15529 1.55923 1.17468 1.20322 0.81507 0.77984 0.89069 1.90633 1.52700 1.61534 1.42661 1.22287 1.04158 0.98196 0.96454 0.83974 1.23136 1.00492 0.89418 1.04241 1.22383 0.88851 1.01824 0.99913 0.89602 1.20739 0.96036 0.96372 0.93192 1.21565 1.00327 0.96000 0.97403 1.21521 0.96358 1.00789 0.96640 1.21561 0.96938 0.95957 1.01427 1.21514 1.00470 0.96576 0.96653 1.21548 0.94933 1.00573 0.97915 0.93608 0.93773 0.95791 0.91030 0.94059 0.92614 0.76280 0.84727 0.90144 0.89294 0.93782 0.92262 0.91000 0.92008 0.91036 0.92972 0.91039 0.91431 0.91373 0.93265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.71 8.51 71.98 0.61 -5.10 16 2 C -0.12 -6.09 5.45 30.59 0.17 -5.93 16 3 C 0.28 14.60 2.24 44.25 0.10 14.70 16 4 H -0.01 -0.34 7.58 -2.38 -0.02 -0.36 16 5 C -0.55 -29.41 8.73 25.60 0.22 -29.19 16 6 H 0.07 3.59 7.74 -2.91 -0.02 3.56 16 7 C 0.01 0.75 5.29 84.66 0.45 1.20 16 8 N -0.92 -53.09 11.29 21.45 0.24 -52.85 16 9 Si 0.97 42.44 29.54 68.60 2.03 44.47 16 10 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 11 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 12 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 13 N -0.70 -29.83 5.02 -446.08 -2.24 -32.07 16 14 C 0.52 21.20 6.18 87.66 0.54 21.74 16 15 O -0.59 -29.14 13.39 -3.04 -0.04 -29.18 16 16 C -0.19 -5.36 5.39 -11.54 -0.06 -5.43 16 17 H 0.14 3.24 7.61 -2.39 -0.02 3.22 16 18 C -0.14 -3.20 9.88 30.59 0.30 -2.90 16 19 C -0.11 -2.81 4.66 -10.80 -0.05 -2.86 16 20 H 0.09 2.73 7.64 -2.38 -0.02 2.71 16 21 C -0.05 -0.85 2.34 -10.79 -0.03 -0.87 16 22 C -0.12 -2.29 5.04 30.59 0.15 -2.13 16 23 C -0.12 -1.78 5.92 30.59 0.18 -1.60 16 24 C -0.12 -1.73 5.92 30.59 0.18 -1.55 16 25 C -0.11 -1.57 5.92 30.59 0.18 -1.39 16 26 C -0.11 -1.94 5.18 30.59 0.16 -1.78 16 27 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.04 2.00 5.64 -2.39 -0.01 1.98 16 29 H 0.02 1.20 7.85 -2.39 -0.02 1.18 16 30 H 0.07 4.04 5.95 -2.38 -0.01 4.02 16 31 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 33 H 0.40 14.54 8.54 -92.71 -0.79 13.75 16 34 H 0.13 2.22 8.05 -2.39 -0.02 2.20 16 35 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 36 H 0.09 1.38 7.90 -2.39 -0.02 1.36 16 37 H 0.04 1.04 8.14 -2.38 -0.02 1.02 16 38 H 0.06 1.21 7.29 -2.39 -0.02 1.20 16 39 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 44 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 45 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 46 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -66.12 355.04 3.25 -62.87 By element: Atomic # 1 Polarization: 29.69 SS G_CDS: 0.15 Total: 29.84 kcal Atomic # 6 Polarization: -26.20 SS G_CDS: 3.11 Total: -23.08 kcal Atomic # 7 Polarization: -82.92 SS G_CDS: -2.00 Total: -84.92 kcal Atomic # 8 Polarization: -29.14 SS G_CDS: -0.04 Total: -29.18 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Total: -66.12 3.25 -62.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183967923.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.614 kcal (2) G-P(sol) polarization free energy of solvation -66.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds