Wall clock time and date at job start Tue Mar 31 2020 01:03:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.52995 * 109.47544 * 2 1 4 4 C 1.53007 * 109.47356 * 120.00300 * 2 1 3 5 5 C 1.53004 * 115.56013 * 28.04554 * 4 2 1 6 6 C 1.52996 * 117.49520 * 242.35830 * 4 2 1 7 7 C 1.52999 * 117.49998 * 173.73605 * 4 2 1 8 8 H 1.08994 * 117.51562 * 214.97172 * 7 4 2 9 9 C 1.50701 * 117.49731 * 359.97438 * 7 4 2 10 10 O 1.21290 * 120.00255 * 313.29180 * 9 7 4 11 11 N 1.34775 * 119.99717 * 133.29189 * 9 7 4 12 12 C 1.37103 * 120.00078 * 355.64729 * 11 9 7 13 13 H 1.08004 * 119.99483 * 232.73002 * 12 11 9 14 14 C 1.38950 * 120.00053 * 52.73103 * 12 11 9 15 15 N 1.31408 * 120.00003 * 19.27561 * 14 12 11 16 16 Si 1.86799 * 119.99748 * 199.27593 * 14 12 11 17 17 H 1.48498 * 109.47406 * 59.99774 * 16 14 12 18 18 H 1.48499 * 109.46956 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.46999 * 299.99627 * 16 14 12 20 20 C 1.46498 * 120.00229 * 175.37002 * 11 9 7 21 21 C 1.54267 * 110.03401 * 237.91069 * 20 11 9 22 22 C 1.54963 * 104.15754 * 217.13419 * 21 20 11 23 23 C 1.54884 * 102.78025 * 37.88802 * 22 21 20 24 24 C 1.53875 * 110.03551 * 120.68822 * 20 11 9 25 25 H 1.09005 * 109.47073 * 300.00018 * 1 2 3 26 26 H 1.09004 * 109.47423 * 59.99468 * 1 2 3 27 27 H 1.08999 * 109.47516 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47073 * 239.99982 * 2 1 3 29 29 H 1.09005 * 109.47238 * 61.92355 * 3 2 1 30 30 H 1.08997 * 109.47626 * 181.92433 * 3 2 1 31 31 H 1.09008 * 109.46992 * 301.92571 * 3 2 1 32 32 H 1.08993 * 109.46858 * 205.69040 * 5 4 2 33 33 H 1.09002 * 109.47057 * 325.69159 * 5 4 2 34 34 H 1.09000 * 109.47073 * 85.68680 * 5 4 2 35 35 H 1.08999 * 117.49821 * 145.02174 * 6 4 2 36 36 H 1.08995 * 117.50397 * 359.97438 * 6 4 2 37 37 H 0.97004 * 119.99818 * 184.83877 * 15 14 12 38 38 H 1.09005 * 110.01346 * 359.29764 * 20 11 9 39 39 H 1.08998 * 110.48444 * 335.77991 * 21 20 11 40 40 H 1.09002 * 110.48680 * 98.42435 * 21 20 11 41 41 H 1.08998 * 110.72138 * 279.56858 * 22 21 20 42 42 H 1.09004 * 110.92185 * 156.29673 * 22 21 20 43 43 H 1.09004 * 110.48613 * 203.40809 * 23 22 21 44 44 H 1.08998 * 110.60406 * 80.81350 * 23 22 21 45 45 H 1.08992 * 110.03322 * 238.57021 * 24 20 11 46 46 H 1.08998 * 110.02748 * 359.95662 * 24 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.1115 -1.7976 1.8154 6 6 2.8691 0.0918 2.2453 7 6 3.5473 -0.9577 1.3625 8 1 3.8779 -1.8799 1.8405 9 6 4.4160 -0.4628 0.2349 10 8 4.1030 -0.6873 -0.9153 11 7 5.5406 0.2292 0.5044 12 6 5.8483 0.5601 1.7989 13 1 6.0667 1.5860 2.0566 14 6 5.8791 -0.4242 2.7791 15 7 5.9931 -1.6880 2.4377 16 14 5.7584 0.0491 4.5821 17 1 4.4749 0.7559 4.8235 18 1 5.8139 -1.1756 5.4201 19 1 6.8901 0.9432 4.9359 20 6 6.4376 0.6226 -0.5851 21 6 7.8484 0.0481 -0.3416 22 6 8.8027 1.1619 -0.8417 23 6 8.0809 2.4575 -0.3951 24 6 6.5852 2.1538 -0.6195 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8932 -0.5139 -0.8900 29 1 1.7051 1.9463 0.9068 30 1 3.1294 1.4426 -0.0345 31 1 1.6487 1.9662 -0.8723 32 1 1.3046 -1.9200 2.8811 33 1 0.0742 -1.4979 1.6661 34 1 1.2943 -2.7418 1.3022 35 1 2.7532 -0.1401 3.3041 36 1 3.0515 1.1404 2.0106 37 1 5.9441 -2.3799 3.1159 38 1 6.0474 0.2635 -1.5375 39 1 8.0056 -0.1403 0.7204 40 1 7.9927 -0.8660 -0.9176 41 1 8.8997 1.1281 -1.9269 42 1 9.7797 1.0802 -0.3654 43 1 8.3954 3.3007 -1.0101 44 1 8.2750 2.6611 0.6580 45 1 6.2676 2.5378 -1.5889 46 1 5.9889 2.6043 0.1739 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185948372.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:08 Heat of formation + Delta-G solvation = -23.280804 kcal Electronic energy + Delta-G solvation = -24288.076665 eV Core-core repulsion = 21177.970408 eV Total energy + Delta-G solvation = -3110.106257 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.59221 -37.82263 -35.98447 -34.09721 -32.32915 -31.30001 -28.84044 -27.93319 -27.05092 -25.74895 -24.77537 -22.67852 -22.13997 -19.99355 -19.40605 -19.24941 -17.46348 -16.49672 -15.70823 -15.13768 -14.68202 -14.53288 -14.45383 -14.11609 -13.81554 -13.10049 -12.77822 -12.67187 -12.48518 -12.25688 -12.19727 -11.86859 -11.53333 -11.29619 -11.12301 -10.98813 -10.87409 -10.84359 -10.60955 -10.49075 -10.45148 -10.35502 -10.34182 -10.17774 -10.00399 -9.96664 -9.62431 -9.15966 -9.06930 -8.44297 -8.07442 -7.20749 -6.31522 -4.12721 3.15640 3.22851 3.25388 4.09731 4.22296 4.54416 4.93517 4.97598 5.36153 5.38863 5.40125 5.44355 5.56145 5.66193 5.80195 5.93762 6.01227 6.04262 6.10034 6.14562 6.24138 6.28850 6.32697 6.33547 6.35854 6.39674 6.40606 6.46951 6.52909 6.54999 6.56309 6.65613 6.71546 6.75004 6.80641 6.92382 6.95995 7.04380 7.14868 7.17336 7.30036 7.34733 7.50525 8.07986 8.71415 9.03057 9.70627 10.12212 10.72319 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.015261 B = 0.008500 C = 0.006406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.330798 B = 3293.381545 C = 4369.981338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.058 4.058 3 C -0.143 4.143 4 C -0.129 4.129 5 C -0.114 4.114 6 C -0.147 4.147 7 C -0.113 4.113 8 H 0.127 0.873 9 C 0.546 3.454 10 O -0.608 6.608 11 N -0.445 5.445 12 C -0.327 4.327 13 H 0.078 0.922 14 C 0.063 3.937 15 N -0.857 5.857 16 Si 0.893 3.107 17 H -0.268 1.268 18 H -0.286 1.286 19 H -0.275 1.275 20 C 0.133 3.867 21 C -0.120 4.120 22 C -0.123 4.123 23 C -0.116 4.116 24 C -0.126 4.126 25 H 0.048 0.952 26 H 0.045 0.955 27 H 0.053 0.947 28 H 0.089 0.911 29 H 0.048 0.952 30 H 0.065 0.935 31 H 0.041 0.959 32 H 0.049 0.951 33 H 0.061 0.939 34 H 0.053 0.947 35 H 0.077 0.923 36 H 0.099 0.901 37 H 0.267 0.733 38 H 0.076 0.924 39 H 0.090 0.910 40 H 0.049 0.951 41 H 0.055 0.945 42 H 0.056 0.944 43 H 0.051 0.949 44 H 0.064 0.936 45 H 0.050 0.950 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.322 4.128 -0.788 5.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.077 4.077 3 C -0.200 4.200 4 C -0.129 4.129 5 C -0.171 4.171 6 C -0.184 4.184 7 C -0.133 4.133 8 H 0.145 0.855 9 C 0.337 3.663 10 O -0.494 6.494 11 N -0.164 5.164 12 C -0.455 4.455 13 H 0.095 0.905 14 C -0.144 4.144 15 N -0.493 5.493 16 Si 0.719 3.281 17 H -0.193 1.193 18 H -0.211 1.211 19 H -0.200 1.200 20 C 0.029 3.971 21 C -0.159 4.159 22 C -0.161 4.161 23 C -0.154 4.154 24 C -0.165 4.165 25 H 0.068 0.932 26 H 0.064 0.936 27 H 0.072 0.928 28 H 0.107 0.893 29 H 0.067 0.933 30 H 0.084 0.916 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.096 0.904 36 H 0.117 0.883 37 H 0.078 0.922 38 H 0.094 0.906 39 H 0.109 0.891 40 H 0.068 0.932 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.069 0.931 44 H 0.083 0.917 45 H 0.069 0.931 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.371 3.845 -1.272 5.269 hybrid contribution 0.208 0.019 1.266 1.283 sum -3.162 3.864 -0.007 4.993 Atomic orbital electron populations 1.21911 0.96522 1.00917 1.00566 1.20564 0.93765 0.95684 0.97641 1.21910 1.02270 0.95891 0.99898 1.21682 0.92777 1.00424 0.98065 1.21409 0.98625 0.97416 0.99647 1.23094 1.02379 0.97877 0.95080 1.22117 0.90587 1.01561 0.99070 0.85513 1.19411 0.80748 0.78452 0.87685 1.90464 1.73946 1.62406 1.22548 1.43381 1.17001 1.50517 1.05539 1.18965 1.50485 0.93402 0.82650 0.90479 1.25370 0.94658 0.94970 0.99410 1.70023 1.44567 0.99760 1.34906 0.86575 0.79312 0.78192 0.83974 1.19293 1.21120 1.20036 1.21550 0.90541 0.92656 0.92329 1.22592 0.93894 0.96221 1.03163 1.22449 0.98160 0.95929 0.99530 1.22251 0.95622 0.96722 1.00788 1.22398 0.96141 0.97244 1.00688 0.93244 0.93615 0.92804 0.89319 0.93337 0.91627 0.93972 0.93202 0.92043 0.92831 0.90404 0.88317 0.92248 0.90585 0.89137 0.93201 0.92623 0.92495 0.93066 0.91723 0.93075 0.91158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 7.95 37.15 0.30 -1.80 16 2 C -0.06 -1.07 2.42 -90.62 -0.22 -1.29 16 3 C -0.14 -2.59 7.61 37.15 0.28 -2.31 16 4 C -0.13 -2.47 2.52 -154.51 -0.39 -2.86 16 5 C -0.11 -1.86 9.34 37.16 0.35 -1.51 16 6 C -0.15 -2.97 6.96 -26.73 -0.19 -3.15 16 7 C -0.11 -2.55 3.60 -91.77 -0.33 -2.88 16 8 H 0.13 3.11 6.50 -51.93 -0.34 2.77 16 9 C 0.55 13.52 4.40 -10.99 -0.05 13.47 16 10 O -0.61 -16.16 14.00 5.55 0.08 -16.08 16 11 N -0.44 -10.61 2.36 -106.54 -0.25 -10.86 16 12 C -0.33 -7.80 6.29 -14.93 -0.09 -7.90 16 13 H 0.08 1.83 7.24 -52.48 -0.38 1.45 16 14 C 0.06 1.51 3.40 -17.47 -0.06 1.45 16 15 N -0.86 -21.82 11.14 55.50 0.62 -21.20 16 16 Si 0.89 19.01 29.04 -169.99 -4.94 14.07 16 17 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 18 H -0.29 -6.17 7.11 56.52 0.40 -5.77 16 19 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 20 C 0.13 2.90 3.29 -66.81 -0.22 2.68 16 21 C -0.12 -2.46 6.42 -25.03 -0.16 -2.62 16 22 C -0.12 -2.02 6.91 -24.70 -0.17 -2.19 16 23 C -0.12 -1.89 6.83 -25.07 -0.17 -2.06 16 24 C -0.13 -2.34 6.26 -25.61 -0.16 -2.50 16 25 H 0.05 0.68 8.09 -51.93 -0.42 0.26 16 26 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.05 0.74 6.63 -51.93 -0.34 0.40 16 28 H 0.09 1.88 6.54 -51.93 -0.34 1.54 16 29 H 0.05 0.81 7.17 -51.93 -0.37 0.44 16 30 H 0.06 1.38 5.36 -51.93 -0.28 1.10 16 31 H 0.04 0.69 8.14 -51.92 -0.42 0.27 16 32 H 0.05 0.78 7.90 -51.93 -0.41 0.37 16 33 H 0.06 0.87 5.61 -51.93 -0.29 0.58 16 34 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.08 1.52 7.91 -51.93 -0.41 1.11 16 36 H 0.10 2.03 5.79 -51.93 -0.30 1.73 16 37 H 0.27 6.57 8.32 -40.82 -0.34 6.23 16 38 H 0.08 1.77 6.95 -51.93 -0.36 1.41 16 39 H 0.09 2.10 7.02 -51.93 -0.36 1.73 16 40 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 45 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 46 H 0.07 1.38 6.95 -51.93 -0.36 1.02 16 LS Contribution 339.31 15.07 5.11 5.11 Total: -1.00 -26.32 339.31 -8.57 -34.90 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: -7.91 Total: 9.52 kcal Atomic # 6 Polarization: -14.18 SS G_CDS: -1.28 Total: -15.47 kcal Atomic # 7 Polarization: -32.43 SS G_CDS: 0.37 Total: -32.06 kcal Atomic # 8 Polarization: -16.16 SS G_CDS: 0.08 Total: -16.08 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -4.94 Total: 14.07 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -26.32 -8.57 -34.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185948372.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.616 kcal (2) G-P(sol) polarization free energy of solvation -26.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds