Wall clock time and date at job start Tue Mar 31 2020 01:03:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.52995 * 109.47544 * 2 1 4 4 C 1.53007 * 109.47356 * 120.00300 * 2 1 3 5 5 C 1.53004 * 115.56013 * 28.04554 * 4 2 1 6 6 C 1.52996 * 117.49520 * 242.35830 * 4 2 1 7 7 C 1.52999 * 117.49998 * 173.73605 * 4 2 1 8 8 H 1.08994 * 117.51562 * 214.97172 * 7 4 2 9 9 C 1.50701 * 117.49731 * 359.97438 * 7 4 2 10 10 O 1.21290 * 120.00255 * 313.29180 * 9 7 4 11 11 N 1.34775 * 119.99717 * 133.29189 * 9 7 4 12 12 C 1.37103 * 120.00078 * 355.64729 * 11 9 7 13 13 H 1.08004 * 119.99483 * 232.73002 * 12 11 9 14 14 C 1.38950 * 120.00053 * 52.73103 * 12 11 9 15 15 N 1.31408 * 120.00003 * 19.27561 * 14 12 11 16 16 Si 1.86799 * 119.99748 * 199.27593 * 14 12 11 17 17 H 1.48498 * 109.47406 * 59.99774 * 16 14 12 18 18 H 1.48499 * 109.46956 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.46999 * 299.99627 * 16 14 12 20 20 C 1.46498 * 120.00229 * 175.37002 * 11 9 7 21 21 C 1.54267 * 110.03401 * 237.91069 * 20 11 9 22 22 C 1.54963 * 104.15754 * 217.13419 * 21 20 11 23 23 C 1.54884 * 102.78025 * 37.88802 * 22 21 20 24 24 C 1.53875 * 110.03551 * 120.68822 * 20 11 9 25 25 H 1.09005 * 109.47073 * 300.00018 * 1 2 3 26 26 H 1.09004 * 109.47423 * 59.99468 * 1 2 3 27 27 H 1.08999 * 109.47516 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47073 * 239.99982 * 2 1 3 29 29 H 1.09005 * 109.47238 * 61.92355 * 3 2 1 30 30 H 1.08997 * 109.47626 * 181.92433 * 3 2 1 31 31 H 1.09008 * 109.46992 * 301.92571 * 3 2 1 32 32 H 1.08993 * 109.46858 * 205.69040 * 5 4 2 33 33 H 1.09002 * 109.47057 * 325.69159 * 5 4 2 34 34 H 1.09000 * 109.47073 * 85.68680 * 5 4 2 35 35 H 1.08999 * 117.49821 * 145.02174 * 6 4 2 36 36 H 1.08995 * 117.50397 * 359.97438 * 6 4 2 37 37 H 0.97004 * 119.99818 * 184.83877 * 15 14 12 38 38 H 1.09005 * 110.01346 * 359.29764 * 20 11 9 39 39 H 1.08998 * 110.48444 * 335.77991 * 21 20 11 40 40 H 1.09002 * 110.48680 * 98.42435 * 21 20 11 41 41 H 1.08998 * 110.72138 * 279.56858 * 22 21 20 42 42 H 1.09004 * 110.92185 * 156.29673 * 22 21 20 43 43 H 1.09004 * 110.48613 * 203.40809 * 23 22 21 44 44 H 1.08998 * 110.60406 * 80.81350 * 23 22 21 45 45 H 1.08992 * 110.03322 * 238.57021 * 24 20 11 46 46 H 1.08998 * 110.02748 * 359.95662 * 24 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.1115 -1.7976 1.8154 6 6 2.8691 0.0918 2.2453 7 6 3.5473 -0.9577 1.3625 8 1 3.8779 -1.8799 1.8405 9 6 4.4160 -0.4628 0.2349 10 8 4.1030 -0.6873 -0.9153 11 7 5.5406 0.2292 0.5044 12 6 5.8483 0.5601 1.7989 13 1 6.0667 1.5860 2.0566 14 6 5.8791 -0.4242 2.7791 15 7 5.9931 -1.6880 2.4377 16 14 5.7584 0.0491 4.5821 17 1 4.4749 0.7559 4.8235 18 1 5.8139 -1.1756 5.4201 19 1 6.8901 0.9432 4.9359 20 6 6.4376 0.6226 -0.5851 21 6 7.8484 0.0481 -0.3416 22 6 8.8027 1.1619 -0.8417 23 6 8.0809 2.4575 -0.3951 24 6 6.5852 2.1538 -0.6195 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8932 -0.5139 -0.8900 29 1 1.7051 1.9463 0.9068 30 1 3.1294 1.4426 -0.0345 31 1 1.6487 1.9662 -0.8723 32 1 1.3046 -1.9200 2.8811 33 1 0.0742 -1.4979 1.6661 34 1 1.2943 -2.7418 1.3022 35 1 2.7532 -0.1401 3.3041 36 1 3.0515 1.1404 2.0106 37 1 5.9441 -2.3799 3.1159 38 1 6.0474 0.2635 -1.5375 39 1 8.0056 -0.1403 0.7204 40 1 7.9927 -0.8660 -0.9176 41 1 8.8997 1.1281 -1.9269 42 1 9.7797 1.0802 -0.3654 43 1 8.3954 3.3007 -1.0101 44 1 8.2750 2.6611 0.6580 45 1 6.2676 2.5378 -1.5889 46 1 5.9889 2.6043 0.1739 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185948372.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:06 Heat of formation + Delta-G solvation = -35.041354 kcal Electronic energy + Delta-G solvation = -24288.586641 eV Core-core repulsion = 21177.970408 eV Total energy + Delta-G solvation = -3110.616233 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -41.32437 -39.41187 -37.70362 -35.92171 -33.81010 -33.15306 -30.25170 -29.46965 -28.65480 -27.14214 -26.61441 -24.36702 -23.61411 -21.45516 -21.18039 -20.96440 -19.00586 -18.26427 -17.43040 -16.96372 -16.40545 -16.12127 -16.04324 -15.72826 -15.23614 -14.68915 -14.41164 -14.10144 -14.02160 -13.96073 -13.65403 -13.28891 -13.21197 -12.91157 -12.67202 -12.59444 -12.47999 -12.34561 -12.26110 -12.10399 -11.93561 -11.88505 -11.83226 -11.66451 -11.46521 -11.39900 -11.31995 -10.85645 -10.77878 -10.12952 -9.94797 -9.08464 -8.19214 -6.05324 1.44852 1.49232 1.54504 2.25399 2.39826 2.88530 3.11478 3.24614 3.86738 3.88825 3.93027 4.03294 4.13953 4.24812 4.29987 4.39675 4.55146 4.60575 4.68850 4.71769 4.79290 4.82762 4.83995 4.89243 4.90925 4.98829 5.00513 5.06312 5.07600 5.10096 5.12378 5.16617 5.24025 5.24940 5.28173 5.43439 5.45234 5.52180 5.52861 5.58948 5.59357 5.65148 5.73577 6.21170 6.81263 7.14770 7.80803 8.24216 8.85141 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.015261 B = 0.008500 C = 0.006406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.330798 B = 3293.381545 C = 4369.981338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.060 4.060 3 C -0.137 4.137 4 C -0.113 4.113 5 C -0.112 4.112 6 C -0.135 4.135 7 C -0.141 4.141 8 H 0.105 0.895 9 C 0.535 3.465 10 O -0.639 6.639 11 N -0.449 5.449 12 C -0.329 4.329 13 H 0.078 0.922 14 C 0.036 3.964 15 N -0.887 5.887 16 Si 0.943 3.057 17 H -0.255 1.255 18 H -0.290 1.290 19 H -0.271 1.271 20 C 0.121 3.879 21 C -0.117 4.117 22 C -0.111 4.111 23 C -0.108 4.108 24 C -0.119 4.119 25 H 0.065 0.935 26 H 0.058 0.942 27 H 0.064 0.936 28 H 0.054 0.946 29 H 0.063 0.937 30 H 0.030 0.970 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.090 0.910 34 H 0.049 0.951 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.266 0.734 38 H 0.051 0.949 39 H 0.060 0.940 40 H 0.036 0.964 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.085 0.915 44 H 0.060 0.940 45 H 0.064 0.936 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.155 5.770 -0.024 7.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.079 4.079 3 C -0.194 4.194 4 C -0.114 4.114 5 C -0.169 4.169 6 C -0.172 4.172 7 C -0.161 4.161 8 H 0.122 0.878 9 C 0.327 3.673 10 O -0.528 6.528 11 N -0.167 5.167 12 C -0.457 4.457 13 H 0.096 0.904 14 C -0.169 4.169 15 N -0.524 5.524 16 Si 0.768 3.232 17 H -0.179 1.179 18 H -0.216 1.216 19 H -0.197 1.197 20 C 0.017 3.983 21 C -0.156 4.156 22 C -0.149 4.149 23 C -0.145 4.145 24 C -0.157 4.157 25 H 0.084 0.916 26 H 0.077 0.923 27 H 0.083 0.917 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.049 0.951 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.109 0.891 34 H 0.068 0.932 35 H 0.105 0.895 36 H 0.112 0.888 37 H 0.075 0.925 38 H 0.069 0.931 39 H 0.079 0.921 40 H 0.055 0.945 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.103 0.897 44 H 0.078 0.922 45 H 0.083 0.917 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.189 5.509 -0.502 6.939 hybrid contribution 0.511 -0.522 0.955 1.203 sum -3.678 4.988 0.453 6.213 Atomic orbital electron populations 1.21841 0.93088 1.02147 1.02036 1.20545 0.96568 0.95094 0.95644 1.21839 0.99982 0.96302 1.01277 1.21919 0.91142 1.00392 0.97928 1.21454 0.99456 0.96175 0.99816 1.23038 1.01757 0.96993 0.95400 1.21922 0.92956 1.01514 0.99746 0.87784 1.19824 0.81155 0.78437 0.87876 1.90421 1.74722 1.63771 1.23846 1.43555 1.17010 1.50027 1.06123 1.19058 1.50369 0.93413 0.82851 0.90436 1.25915 0.93998 0.94567 1.02376 1.70123 1.45608 1.00727 1.35905 0.85788 0.79860 0.77752 0.79833 1.17906 1.21572 1.19655 1.21756 0.90676 0.95118 0.90713 1.22486 0.94547 0.97406 1.01114 1.22414 0.97795 0.93941 1.00743 1.22223 0.93372 0.97659 1.01275 1.22317 0.98079 0.94383 1.00961 0.91608 0.92333 0.91711 0.92779 0.91791 0.95101 0.92635 0.92487 0.89144 0.93214 0.89539 0.88835 0.92451 0.93058 0.92130 0.94481 0.90739 0.90693 0.89682 0.92153 0.91743 0.92482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.57 7.95 71.98 0.57 -3.00 16 2 C -0.06 -2.17 2.42 -10.80 -0.03 -2.20 16 3 C -0.14 -4.91 7.61 71.98 0.55 -4.36 16 4 C -0.11 -4.27 2.52 -52.18 -0.13 -4.40 16 5 C -0.11 -3.44 9.34 71.98 0.67 -2.77 16 6 C -0.13 -5.36 6.96 30.59 0.21 -5.15 16 7 C -0.14 -6.53 3.60 -11.54 -0.04 -6.58 16 8 H 0.10 5.31 6.50 -2.39 -0.02 5.30 16 9 C 0.54 27.69 4.40 87.66 0.39 28.08 16 10 O -0.64 -35.85 14.00 -3.06 -0.04 -35.90 16 11 N -0.45 -22.22 2.36 -609.37 -1.44 -23.65 16 12 C -0.33 -16.01 6.29 84.04 0.53 -15.48 16 13 H 0.08 3.72 7.24 -2.91 -0.02 3.70 16 14 C 0.04 1.74 3.40 84.93 0.29 2.03 16 15 N -0.89 -46.58 11.14 21.66 0.24 -46.34 16 16 Si 0.94 38.64 29.04 68.60 1.99 40.63 16 17 H -0.25 -9.85 7.11 99.48 0.71 -9.15 16 18 H -0.29 -12.04 7.11 99.48 0.71 -11.34 16 19 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 20 C 0.12 5.44 3.29 45.72 0.15 5.59 16 21 C -0.12 -4.90 6.42 31.70 0.20 -4.69 16 22 C -0.11 -3.47 6.91 31.91 0.22 -3.25 16 23 C -0.11 -3.27 6.83 31.67 0.22 -3.05 16 24 C -0.12 -4.37 6.26 31.32 0.20 -4.18 16 25 H 0.06 1.56 8.09 -2.38 -0.02 1.54 16 26 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.06 1.59 6.63 -2.39 -0.02 1.57 16 28 H 0.05 2.35 6.54 -2.38 -0.02 2.34 16 29 H 0.06 2.05 7.17 -2.38 -0.02 2.03 16 30 H 0.03 1.31 5.36 -2.39 -0.01 1.29 16 31 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 32 H 0.06 1.66 7.90 -2.39 -0.02 1.64 16 33 H 0.09 2.25 5.61 -2.39 -0.01 2.24 16 34 H 0.05 1.56 8.14 -2.39 -0.02 1.55 16 35 H 0.09 3.25 7.91 -2.39 -0.02 3.24 16 36 H 0.09 3.80 5.79 -2.39 -0.01 3.79 16 37 H 0.27 13.46 8.32 -92.71 -0.77 12.69 16 38 H 0.05 2.52 6.95 -2.38 -0.02 2.50 16 39 H 0.06 2.89 7.02 -2.39 -0.02 2.88 16 40 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 42 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 43 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 44 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 45 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 46 H 0.06 2.24 6.95 -2.39 -0.02 2.22 16 Total: -1.00 -59.65 339.31 5.69 -53.95 By element: Atomic # 1 Polarization: 33.77 SS G_CDS: 0.94 Total: 34.72 kcal Atomic # 6 Polarization: -27.41 SS G_CDS: 4.00 Total: -23.41 kcal Atomic # 7 Polarization: -68.80 SS G_CDS: -1.19 Total: -69.99 kcal Atomic # 8 Polarization: -35.85 SS G_CDS: -0.04 Total: -35.90 kcal Atomic # 14 Polarization: 38.64 SS G_CDS: 1.99 Total: 40.63 kcal Total: -59.65 5.69 -53.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185948372.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.910 kcal (2) G-P(sol) polarization free energy of solvation -59.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds