Wall clock time and date at job start Tue Mar 31 2020 01:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46944 * 2 1 4 4 C 1.52997 * 109.47499 * 120.00356 * 2 1 3 5 5 C 1.52999 * 115.55833 * 325.68709 * 4 2 1 6 6 C 1.52999 * 117.50225 * 111.37608 * 4 2 1 7 7 C 1.53001 * 117.49968 * 180.02562 * 4 2 1 8 8 H 1.08993 * 117.51729 * 359.97438 * 7 4 2 9 9 C 1.50700 * 117.49875 * 145.01883 * 7 4 2 10 10 O 1.21292 * 119.99798 * 0.02562 * 9 7 4 11 11 N 1.34780 * 120.00052 * 180.02562 * 9 7 4 12 12 C 1.37095 * 119.99611 * 359.72669 * 11 9 7 13 13 H 1.07999 * 119.99601 * 129.20409 * 12 11 9 14 14 C 1.38946 * 120.00184 * 309.20361 * 12 11 9 15 15 N 1.31405 * 120.00015 * 337.49797 * 14 12 11 16 16 Si 1.86808 * 120.00111 * 157.49971 * 14 12 11 17 17 H 1.48503 * 109.46769 * 0.02562 * 16 14 12 18 18 H 1.48494 * 109.47337 * 119.99820 * 16 14 12 19 19 H 1.48501 * 109.47091 * 240.00086 * 16 14 12 20 20 C 1.46491 * 120.00031 * 179.97438 * 11 9 7 21 21 C 1.54266 * 110.03661 * 242.41827 * 20 11 9 22 22 C 1.54966 * 104.15915 * 217.14114 * 21 20 11 23 23 C 1.54886 * 102.78115 * 37.88157 * 22 21 20 24 24 C 1.53875 * 110.03154 * 125.19785 * 20 11 9 25 25 H 1.08999 * 109.46821 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46861 * 299.99440 * 1 2 3 27 27 H 1.08993 * 109.47104 * 59.99950 * 1 2 3 28 28 H 1.09002 * 109.47327 * 240.00768 * 2 1 3 29 29 H 1.09001 * 109.47217 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.47603 * 300.00282 * 3 2 1 31 31 H 1.09005 * 109.47199 * 60.00297 * 3 2 1 32 32 H 1.08995 * 109.47710 * 274.31084 * 5 4 2 33 33 H 1.09003 * 109.47139 * 34.31266 * 5 4 2 34 34 H 1.09007 * 109.46983 * 154.31210 * 5 4 2 35 35 H 1.09002 * 117.49241 * 0.02562 * 6 4 2 36 36 H 1.08991 * 117.51876 * 214.97414 * 6 4 2 37 37 H 0.97009 * 120.00179 * 176.10424 * 15 14 12 38 38 H 1.09002 * 110.01884 * 3.81210 * 20 11 9 39 39 H 1.09004 * 110.48324 * 335.78407 * 21 20 11 40 40 H 1.08996 * 110.48933 * 98.42687 * 21 20 11 41 41 H 1.09003 * 110.71628 * 279.56833 * 22 21 20 42 42 H 1.08995 * 110.76303 * 156.22069 * 22 21 20 43 43 H 1.08993 * 110.48789 * 203.40580 * 23 22 21 44 44 H 1.09004 * 110.48616 * 80.76181 * 23 22 21 45 45 H 1.08997 * 110.03522 * 238.57153 * 24 20 11 46 46 H 1.09002 * 110.03202 * 359.95067 * 24 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.1853 -0.5487 2.5063 6 6 2.7420 -2.0663 1.0512 7 6 3.5551 -0.8276 1.4344 8 1 4.1887 -0.3841 0.6664 9 6 4.0909 -0.7548 2.8411 10 8 3.3283 -0.6173 3.7741 11 7 5.4175 -0.8425 3.0623 12 6 6.2790 -1.0035 2.0080 13 1 7.1338 -0.3515 1.9048 14 6 6.0525 -2.0055 1.0725 15 7 5.3226 -3.0503 1.3924 16 14 6.7855 -1.8673 -0.6402 17 1 7.5610 -0.6053 -0.7463 18 1 7.6847 -3.0226 -0.8885 19 1 5.6939 -1.8643 -1.6471 20 6 5.9384 -0.7712 4.4296 21 6 6.8532 0.4614 4.5831 22 6 7.9878 -0.0230 5.5209 23 6 8.2221 -1.4801 5.0510 24 6 6.8081 -2.0052 4.7273 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8934 -0.5137 -0.8901 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 1.4777 0.3660 3.0218 33 1 0.1340 -0.4872 2.2252 34 1 1.3353 -1.4022 3.1676 35 1 2.8407 -2.4371 0.0310 36 1 2.5951 -2.8284 1.8165 37 1 5.1173 -3.7219 0.7231 38 1 5.1140 -0.7152 5.1405 39 1 7.2587 0.7584 3.6159 40 1 6.3071 1.2874 5.0387 41 1 7.6642 0.0000 6.5615 42 1 8.8869 0.5771 5.3816 43 1 8.6749 -2.0698 5.8480 44 1 8.8487 -1.4973 4.1593 45 1 6.4063 -2.5475 5.5832 46 1 6.8419 -2.6575 3.8547 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185948386.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:13 Heat of formation + Delta-G solvation = -27.829369 kcal Electronic energy + Delta-G solvation = -23923.053731 eV Core-core repulsion = 20812.750234 eV Total energy + Delta-G solvation = -3110.303498 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.39604 -37.85718 -36.05959 -34.03620 -32.66158 -31.22780 -28.03642 -27.90635 -27.10601 -26.38999 -24.66148 -23.03043 -21.81583 -20.06979 -19.34011 -19.14234 -17.60458 -16.44653 -15.71311 -15.24843 -14.88822 -14.43977 -14.35229 -13.92031 -13.52786 -13.20644 -12.84310 -12.60914 -12.57593 -12.31994 -11.92862 -11.78629 -11.67675 -11.39395 -11.15959 -11.06639 -10.94392 -10.78555 -10.68846 -10.60548 -10.46881 -10.42238 -10.33536 -10.30006 -10.00927 -9.88888 -9.60555 -9.20309 -8.84079 -8.51046 -8.01971 -7.23131 -6.32428 -4.08132 3.12062 3.23973 3.26361 4.03308 4.13788 4.61732 4.84453 5.07041 5.29279 5.31904 5.38137 5.45214 5.60455 5.63061 5.77540 5.94397 5.99856 6.06643 6.11885 6.16012 6.22265 6.23401 6.28036 6.28465 6.35062 6.36454 6.44756 6.52956 6.54356 6.57346 6.60996 6.70481 6.75447 6.77964 6.82583 6.87468 6.93350 6.98571 7.10220 7.20748 7.32645 7.39078 7.51613 8.07121 8.74535 9.02731 9.72323 10.14284 10.70929 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.016690 B = 0.007298 C = 0.005887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.290560 B = 3835.610760 C = 4755.433291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.056 4.056 3 C -0.142 4.142 4 C -0.127 4.127 5 C -0.092 4.092 6 C -0.113 4.113 7 C -0.116 4.116 8 H 0.107 0.893 9 C 0.539 3.461 10 O -0.607 6.607 11 N -0.443 5.443 12 C -0.343 4.343 13 H 0.078 0.922 14 C 0.063 3.937 15 N -0.839 5.839 16 Si 0.889 3.111 17 H -0.268 1.268 18 H -0.283 1.283 19 H -0.278 1.278 20 C 0.134 3.866 21 C -0.128 4.128 22 C -0.121 4.121 23 C -0.117 4.117 24 C -0.124 4.124 25 H 0.052 0.948 26 H 0.059 0.941 27 H 0.045 0.955 28 H 0.063 0.937 29 H 0.057 0.943 30 H 0.045 0.955 31 H 0.053 0.947 32 H 0.058 0.942 33 H 0.038 0.962 34 H 0.058 0.942 35 H 0.077 0.923 36 H 0.090 0.910 37 H 0.267 0.733 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.052 0.948 41 H 0.057 0.943 42 H 0.056 0.944 43 H 0.050 0.950 44 H 0.064 0.936 45 H 0.045 0.955 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.788 3.813 -0.927 4.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.075 4.075 3 C -0.200 4.200 4 C -0.127 4.127 5 C -0.148 4.148 6 C -0.151 4.151 7 C -0.137 4.137 8 H 0.125 0.875 9 C 0.330 3.670 10 O -0.494 6.494 11 N -0.162 5.162 12 C -0.471 4.471 13 H 0.096 0.904 14 C -0.146 4.146 15 N -0.472 5.472 16 Si 0.715 3.285 17 H -0.192 1.192 18 H -0.209 1.209 19 H -0.204 1.204 20 C 0.030 3.970 21 C -0.167 4.167 22 C -0.159 4.159 23 C -0.154 4.154 24 C -0.162 4.162 25 H 0.071 0.929 26 H 0.078 0.922 27 H 0.064 0.936 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.057 0.943 34 H 0.077 0.923 35 H 0.095 0.905 36 H 0.108 0.892 37 H 0.077 0.923 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.071 0.929 41 H 0.076 0.924 42 H 0.075 0.925 43 H 0.069 0.931 44 H 0.082 0.918 45 H 0.064 0.936 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.161 3.665 -0.500 4.284 hybrid contribution 0.685 -0.267 -1.099 1.322 sum -1.477 3.398 -1.599 4.035 Atomic orbital electron populations 1.21865 0.95639 1.01384 1.01017 1.20595 0.95059 0.95706 0.96107 1.21789 1.01529 0.95917 1.00739 1.21700 0.93978 1.00684 0.96387 1.21276 0.95858 1.03048 0.94657 1.22688 1.01246 0.90320 1.00834 1.21787 0.91313 1.03378 0.97230 0.87481 1.19416 0.82369 0.76625 0.88636 1.90484 1.57474 1.56027 1.45378 1.43350 1.04614 1.64220 1.04013 1.19034 1.10666 1.14781 1.02599 0.90399 1.25381 0.96394 0.93139 0.99663 1.70048 1.36469 1.07294 1.33428 0.86492 0.79333 0.78572 0.84091 1.19185 1.20876 1.20359 1.21530 0.95307 0.93125 0.87009 1.22673 0.96461 0.97851 0.99706 1.22441 0.98094 0.96696 0.98694 1.22265 0.97928 0.95356 0.99881 1.22351 0.93716 0.98553 1.01575 0.92875 0.92200 0.93565 0.91855 0.92405 0.93602 0.92755 0.92276 0.94347 0.92265 0.90476 0.89153 0.92279 0.90610 0.90769 0.92918 0.92380 0.92543 0.93111 0.91763 0.93649 0.88976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 8.20 37.16 0.30 -1.63 16 2 C -0.06 -0.91 2.98 -90.62 -0.27 -1.18 16 3 C -0.14 -2.18 9.03 37.16 0.34 -1.85 16 4 C -0.13 -2.44 1.91 -154.51 -0.29 -2.74 16 5 C -0.09 -1.78 7.73 37.16 0.29 -1.49 16 6 C -0.11 -2.38 7.67 -26.70 -0.20 -2.58 16 7 C -0.12 -2.60 3.10 -91.74 -0.28 -2.89 16 8 H 0.11 2.46 6.43 -51.93 -0.33 2.13 16 9 C 0.54 13.49 6.91 -10.98 -0.08 13.42 16 10 O -0.61 -16.04 12.45 5.55 0.07 -15.97 16 11 N -0.44 -10.79 2.39 -106.55 -0.26 -11.04 16 12 C -0.34 -8.36 6.90 -14.94 -0.10 -8.46 16 13 H 0.08 1.90 6.98 -52.49 -0.37 1.54 16 14 C 0.06 1.52 3.40 -17.47 -0.06 1.46 16 15 N -0.84 -21.02 10.77 55.50 0.60 -20.42 16 16 Si 0.89 18.94 29.53 -169.99 -5.02 13.92 16 17 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 18 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 19 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 20 C 0.13 2.96 3.29 -66.82 -0.22 2.74 16 21 C -0.13 -2.42 6.43 -25.03 -0.16 -2.59 16 22 C -0.12 -1.94 6.91 -24.70 -0.17 -2.11 16 23 C -0.12 -1.99 6.83 -25.07 -0.17 -2.17 16 24 C -0.12 -2.54 6.24 -25.61 -0.16 -2.70 16 25 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.06 0.81 6.45 -51.93 -0.33 0.47 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.06 1.02 7.90 -51.93 -0.41 0.61 16 29 H 0.06 0.95 7.29 -51.93 -0.38 0.58 16 30 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.06 1.23 7.26 -51.93 -0.38 0.85 16 33 H 0.04 0.63 5.59 -51.93 -0.29 0.34 16 34 H 0.06 1.27 7.01 -51.93 -0.36 0.91 16 35 H 0.08 1.54 8.05 -51.93 -0.42 1.13 16 36 H 0.09 2.07 8.05 -51.93 -0.42 1.65 16 37 H 0.27 6.42 8.31 -40.82 -0.34 6.08 16 38 H 0.08 1.78 6.95 -51.93 -0.36 1.42 16 39 H 0.07 1.48 6.66 -51.93 -0.35 1.13 16 40 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 42 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 44 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 45 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 46 H 0.09 2.20 7.16 -51.93 -0.37 1.83 16 LS Contribution 345.51 15.07 5.21 5.21 Total: -1.00 -26.24 345.51 -8.78 -35.02 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: -8.13 Total: 8.04 kcal Atomic # 6 Polarization: -13.51 SS G_CDS: -1.25 Total: -14.75 kcal Atomic # 7 Polarization: -31.81 SS G_CDS: 0.34 Total: -31.47 kcal Atomic # 8 Polarization: -16.04 SS G_CDS: 0.07 Total: -15.97 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.02 Total: 13.92 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -26.24 -8.78 -35.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185948386.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.189 kcal (2) G-P(sol) polarization free energy of solvation -26.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds