Wall clock time and date at job start Tue Mar 31 2020 01:03:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46892 * 2 1 4 4 C 1.53005 * 109.47197 * 240.00081 * 2 1 3 5 5 C 1.52998 * 115.54784 * 34.28091 * 4 2 1 6 6 C 1.52993 * 117.49845 * 248.60789 * 4 2 1 7 7 C 1.52996 * 117.49751 * 179.97438 * 4 2 1 8 8 H 1.09001 * 117.50239 * 0.02562 * 7 4 2 9 9 C 1.50704 * 117.49911 * 214.98123 * 7 4 2 10 10 O 1.21291 * 119.99997 * 359.97438 * 9 7 4 11 11 N 1.34775 * 120.00195 * 180.02562 * 9 7 4 12 12 C 1.37093 * 120.00486 * 179.97438 * 11 9 7 13 13 H 1.07997 * 120.00243 * 131.94425 * 12 11 9 14 14 C 1.38953 * 119.99504 * 311.95244 * 12 11 9 15 15 N 1.31420 * 119.99616 * 168.19921 * 14 12 11 16 16 Si 1.86798 * 120.00213 * 348.19686 * 14 12 11 17 17 H 1.48496 * 109.46982 * 95.78402 * 16 14 12 18 18 H 1.48500 * 109.47043 * 215.78690 * 16 14 12 19 19 H 1.48502 * 109.47023 * 335.78387 * 16 14 12 20 20 C 1.46507 * 119.99811 * 359.97438 * 11 9 7 21 21 C 1.54262 * 110.03488 * 243.88609 * 20 11 9 22 22 C 1.54958 * 104.16196 * 217.13718 * 21 20 11 23 23 C 1.54890 * 102.77739 * 37.88946 * 22 21 20 24 24 C 1.53876 * 110.03099 * 126.67101 * 20 11 9 25 25 H 1.09000 * 109.47081 * 60.00086 * 1 2 3 26 26 H 1.08997 * 109.47441 * 299.99937 * 1 2 3 27 27 H 1.09004 * 109.47113 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47081 * 119.99914 * 2 1 3 29 29 H 1.08997 * 109.47026 * 59.99809 * 3 2 1 30 30 H 1.08998 * 109.46966 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.47187 * 299.99849 * 3 2 1 32 32 H 1.08996 * 109.47533 * 85.58469 * 5 4 2 33 33 H 1.09001 * 109.46652 * 205.58498 * 5 4 2 34 34 H 1.09001 * 109.47503 * 325.57518 * 5 4 2 35 35 H 1.09000 * 117.49860 * 359.97438 * 6 4 2 36 36 H 1.08996 * 117.50264 * 144.99921 * 6 4 2 37 37 H 0.97001 * 119.99101 * 180.02562 * 15 14 12 38 38 H 1.08999 * 110.01543 * 5.27999 * 20 11 9 39 39 H 1.08998 * 110.49003 * 335.79000 * 21 20 11 40 40 H 1.09003 * 110.48538 * 98.43113 * 21 20 11 41 41 H 1.08997 * 110.72154 * 279.57464 * 22 21 20 42 42 H 1.09000 * 110.92395 * 156.29801 * 22 21 20 43 43 H 1.09003 * 110.48811 * 203.40276 * 23 22 21 44 44 H 1.09004 * 110.59644 * 80.81751 * 23 22 21 45 45 H 1.09004 * 110.03362 * 238.57348 * 24 20 11 46 46 H 1.09003 * 110.03050 * 359.95137 * 24 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.1846 -0.5490 -2.5061 6 6 2.7422 -2.0661 -1.0514 7 6 3.5550 -0.8275 -1.4346 8 1 4.1884 -0.3840 -0.6663 9 6 4.0908 -0.7547 -2.8413 10 8 3.3282 -0.6171 -3.7744 11 7 5.4173 -0.8434 -3.0626 12 6 5.9047 -0.7776 -4.3423 13 1 6.7345 -0.1255 -4.5712 14 6 5.3309 -1.5500 -5.3447 15 7 5.6338 -1.3235 -6.6033 16 14 4.1291 -2.9103 -4.9035 17 1 2.7396 -2.3984 -5.0148 18 1 4.3117 -4.0532 -5.8338 19 1 4.3806 -3.3605 -3.5109 20 6 6.3384 -1.0101 -1.9356 21 6 7.2683 0.2160 -1.8272 22 6 8.6331 -0.3799 -1.3992 23 6 8.6946 -1.7046 -2.1995 24 6 7.2448 -2.2309 -2.1718 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9564 0.8899 30 1 3.1299 1.4426 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.4751 0.3668 -3.0207 33 1 1.3360 -1.4016 -3.1682 34 1 0.1332 -0.4899 -2.2247 35 1 2.8412 -2.4368 -0.0312 36 1 2.5948 -2.8282 -1.8165 37 1 5.2328 -1.8625 -7.3031 38 1 5.7766 -1.1356 -1.0100 39 1 7.3558 0.7150 -2.7923 40 1 6.8996 0.9087 -1.0707 41 1 8.6495 -0.5753 -0.3270 42 1 9.4524 0.2809 -1.6825 43 1 9.3668 -2.4125 -1.7146 44 1 9.0134 -1.5186 -3.2252 45 1 7.1235 -2.9486 -1.3604 46 1 6.9987 -2.6998 -3.1246 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185948406.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:18 Heat of formation + Delta-G solvation = -15.729693 kcal Electronic energy + Delta-G solvation = -23930.815891 eV Core-core repulsion = 20821.037075 eV Total energy + Delta-G solvation = -3109.778816 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.90644 -38.13268 -36.61240 -33.58321 -33.05412 -31.74500 -28.34293 -28.12768 -27.12423 -26.70036 -25.48013 -22.66035 -22.21114 -20.26414 -20.04018 -19.11918 -17.84794 -16.88601 -16.22984 -15.44448 -15.05075 -14.77374 -14.27510 -14.07662 -13.76445 -13.40457 -13.10702 -12.96086 -12.68744 -12.56099 -12.30908 -12.16132 -11.91475 -11.83300 -11.44977 -11.22886 -11.03863 -11.00948 -10.91012 -10.69224 -10.61226 -10.51732 -10.36655 -10.33605 -10.03628 -9.87403 -9.79764 -9.55055 -9.21015 -8.56712 -8.21848 -7.43847 -6.11916 -3.95148 3.26940 3.47034 3.62832 3.71138 4.25766 4.42260 4.58646 4.88727 4.96597 5.10510 5.14873 5.19295 5.25607 5.30607 5.42701 5.46693 5.58325 5.68357 5.73213 5.77225 5.88208 5.95892 5.97174 6.00237 6.02359 6.09811 6.11224 6.15876 6.19695 6.21225 6.33806 6.37158 6.39614 6.41653 6.47791 6.51833 6.54683 6.62357 6.81105 6.89100 7.02831 7.09073 7.92293 8.13421 8.87204 9.01936 9.49373 9.92490 10.93484 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.015471 B = 0.007950 C = 0.006020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.346967 B = 3520.982262 C = 4650.011546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.057 4.057 3 C -0.144 4.144 4 C -0.089 4.089 5 C -0.104 4.104 6 C -0.160 4.160 7 C -0.172 4.172 8 H 0.111 0.889 9 C 0.486 3.514 10 O -0.539 6.539 11 N -0.460 5.460 12 C -0.330 4.330 13 H 0.092 0.908 14 C 0.087 3.913 15 N -0.876 5.876 16 Si 0.912 3.088 17 H -0.260 1.260 18 H -0.313 1.313 19 H -0.278 1.278 20 C 0.128 3.872 21 C -0.131 4.131 22 C -0.121 4.121 23 C -0.117 4.117 24 C -0.128 4.128 25 H 0.062 0.938 26 H 0.050 0.950 27 H 0.054 0.946 28 H 0.066 0.934 29 H 0.049 0.951 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.046 0.954 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.270 0.730 38 H 0.072 0.928 39 H 0.081 0.919 40 H 0.054 0.946 41 H 0.058 0.942 42 H 0.059 0.941 43 H 0.053 0.947 44 H 0.069 0.931 45 H 0.051 0.949 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.533 0.509 14.970 15.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.075 4.075 3 C -0.201 4.201 4 C -0.090 4.090 5 C -0.161 4.161 6 C -0.198 4.198 7 C -0.193 4.193 8 H 0.129 0.871 9 C 0.275 3.725 10 O -0.422 6.422 11 N -0.181 5.181 12 C -0.456 4.456 13 H 0.110 0.890 14 C -0.121 4.121 15 N -0.512 5.512 16 Si 0.744 3.256 17 H -0.186 1.186 18 H -0.243 1.243 19 H -0.204 1.204 20 C 0.024 3.976 21 C -0.169 4.169 22 C -0.159 4.159 23 C -0.155 4.155 24 C -0.166 4.166 25 H 0.081 0.919 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.085 0.915 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.065 0.935 35 H 0.112 0.888 36 H 0.110 0.890 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.100 0.900 40 H 0.073 0.927 41 H 0.077 0.923 42 H 0.078 0.922 43 H 0.072 0.928 44 H 0.088 0.912 45 H 0.070 0.930 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.916 0.555 14.281 14.586 hybrid contribution -0.284 -0.782 0.193 0.854 sum -3.201 -0.227 14.473 14.825 Atomic orbital electron populations 1.21886 0.95112 1.01658 1.01529 1.20647 0.95635 0.95874 0.95388 1.21800 1.01243 0.95675 1.01382 1.21481 0.92183 0.98189 0.97133 1.21419 0.96307 1.04023 0.94307 1.23147 1.03612 0.91173 1.01834 1.22449 0.94703 1.04139 0.98015 0.87083 1.19555 0.83711 0.80782 0.88406 1.90501 1.55987 1.51636 1.44050 1.43745 1.03441 1.64690 1.06239 1.18635 1.19544 1.25710 0.81714 0.89033 1.25360 0.95685 0.96472 0.94535 1.69709 1.43192 1.38850 0.99467 0.86284 0.83440 0.78713 0.77148 1.18622 1.24346 1.20403 1.21794 0.91363 0.94256 0.90207 1.22712 0.94617 0.97643 1.01964 1.22433 0.97318 0.97120 0.99002 1.22259 0.96575 0.96138 1.00492 1.22378 0.94390 0.97321 1.02521 0.91910 0.93138 0.92721 0.91517 0.93152 0.92612 0.92362 0.91248 0.91924 0.93521 0.88785 0.88979 0.92042 0.90954 0.90036 0.92683 0.92325 0.92177 0.92773 0.91198 0.93021 0.89784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 8.20 37.16 0.30 -1.32 16 2 C -0.06 -0.73 2.99 -90.62 -0.27 -1.00 16 3 C -0.14 -1.78 9.03 37.16 0.34 -1.44 16 4 C -0.09 -1.45 1.91 -154.51 -0.29 -1.74 16 5 C -0.10 -1.88 7.73 37.16 0.29 -1.59 16 6 C -0.16 -2.64 9.53 -26.73 -0.25 -2.89 16 7 C -0.17 -3.13 4.16 -91.76 -0.38 -3.51 16 8 H 0.11 1.79 6.22 -51.93 -0.32 1.47 16 9 C 0.49 11.41 5.50 -10.98 -0.06 11.34 16 10 O -0.54 -14.49 8.94 5.55 0.05 -14.44 16 11 N -0.46 -10.84 2.06 -106.54 -0.22 -11.06 16 12 C -0.33 -9.10 7.90 -14.93 -0.12 -9.22 16 13 H 0.09 2.68 7.16 -52.49 -0.38 2.31 16 14 C 0.09 2.55 5.04 -17.46 -0.09 2.46 16 15 N -0.88 -26.87 13.96 55.50 0.77 -26.09 16 16 Si 0.91 24.48 24.58 -169.99 -4.18 20.30 16 17 H -0.26 -7.30 6.53 56.52 0.37 -6.93 16 18 H -0.31 -8.37 7.11 56.52 0.40 -7.97 16 19 H -0.28 -7.13 7.01 56.52 0.40 -6.74 16 20 C 0.13 2.42 3.15 -66.81 -0.21 2.21 16 21 C -0.13 -2.21 6.43 -25.04 -0.16 -2.37 16 22 C -0.12 -1.72 6.91 -24.70 -0.17 -1.89 16 23 C -0.12 -1.83 6.83 -25.07 -0.17 -2.01 16 24 C -0.13 -2.32 6.24 -25.62 -0.16 -2.48 16 25 H 0.06 0.73 6.45 -51.93 -0.33 0.40 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.07 0.78 7.90 -51.93 -0.41 0.37 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.05 0.72 7.29 -51.93 -0.38 0.34 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.07 1.39 7.27 -51.93 -0.38 1.02 16 33 H 0.06 1.31 7.01 -51.93 -0.36 0.95 16 34 H 0.05 0.70 5.59 -51.93 -0.29 0.41 16 35 H 0.09 1.26 8.05 -51.93 -0.42 0.84 16 36 H 0.09 1.71 8.05 -51.93 -0.42 1.29 16 37 H 0.27 7.86 8.31 -40.82 -0.34 7.52 16 38 H 0.07 1.22 5.58 -51.93 -0.29 0.93 16 39 H 0.08 1.60 6.73 -51.93 -0.35 1.25 16 40 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 41 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 44 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 45 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.08 1.82 7.11 -51.93 -0.37 1.45 16 LS Contribution 341.85 15.07 5.15 5.15 Total: -1.00 -31.51 341.85 -7.93 -39.45 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -8.10 Total: 2.14 kcal Atomic # 6 Polarization: -14.03 SS G_CDS: -1.41 Total: -15.45 kcal Atomic # 7 Polarization: -37.71 SS G_CDS: 0.55 Total: -37.15 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: 0.05 Total: -14.44 kcal Atomic # 14 Polarization: 24.48 SS G_CDS: -4.18 Total: 20.30 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.51 -7.93 -39.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185948406.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.717 kcal (2) G-P(sol) polarization free energy of solvation -31.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds