Wall clock time and date at job start Tue Mar 31 2020 01:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46892 * 2 1 4 4 C 1.53005 * 109.47197 * 240.00081 * 2 1 3 5 5 C 1.52998 * 115.54784 * 34.28091 * 4 2 1 6 6 C 1.52993 * 117.49845 * 248.60789 * 4 2 1 7 7 C 1.52996 * 117.49751 * 179.97438 * 4 2 1 8 8 H 1.09001 * 117.50239 * 0.02562 * 7 4 2 9 9 C 1.50704 * 117.49911 * 214.98123 * 7 4 2 10 10 O 1.21291 * 119.99997 * 359.97438 * 9 7 4 11 11 N 1.34775 * 120.00195 * 180.02562 * 9 7 4 12 12 C 1.37093 * 120.00486 * 179.97438 * 11 9 7 13 13 H 1.07997 * 120.00243 * 131.94425 * 12 11 9 14 14 C 1.38953 * 119.99504 * 311.95244 * 12 11 9 15 15 N 1.31420 * 119.99616 * 168.19921 * 14 12 11 16 16 Si 1.86798 * 120.00213 * 348.19686 * 14 12 11 17 17 H 1.48496 * 109.46982 * 95.78402 * 16 14 12 18 18 H 1.48500 * 109.47043 * 215.78690 * 16 14 12 19 19 H 1.48502 * 109.47023 * 335.78387 * 16 14 12 20 20 C 1.46507 * 119.99811 * 359.97438 * 11 9 7 21 21 C 1.54262 * 110.03488 * 243.88609 * 20 11 9 22 22 C 1.54958 * 104.16196 * 217.13718 * 21 20 11 23 23 C 1.54890 * 102.77739 * 37.88946 * 22 21 20 24 24 C 1.53876 * 110.03099 * 126.67101 * 20 11 9 25 25 H 1.09000 * 109.47081 * 60.00086 * 1 2 3 26 26 H 1.08997 * 109.47441 * 299.99937 * 1 2 3 27 27 H 1.09004 * 109.47113 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47081 * 119.99914 * 2 1 3 29 29 H 1.08997 * 109.47026 * 59.99809 * 3 2 1 30 30 H 1.08998 * 109.46966 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.47187 * 299.99849 * 3 2 1 32 32 H 1.08996 * 109.47533 * 85.58469 * 5 4 2 33 33 H 1.09001 * 109.46652 * 205.58498 * 5 4 2 34 34 H 1.09001 * 109.47503 * 325.57518 * 5 4 2 35 35 H 1.09000 * 117.49860 * 359.97438 * 6 4 2 36 36 H 1.08996 * 117.50264 * 144.99921 * 6 4 2 37 37 H 0.97001 * 119.99101 * 180.02562 * 15 14 12 38 38 H 1.08999 * 110.01543 * 5.27999 * 20 11 9 39 39 H 1.08998 * 110.49003 * 335.79000 * 21 20 11 40 40 H 1.09003 * 110.48538 * 98.43113 * 21 20 11 41 41 H 1.08997 * 110.72154 * 279.57464 * 22 21 20 42 42 H 1.09000 * 110.92395 * 156.29801 * 22 21 20 43 43 H 1.09003 * 110.48811 * 203.40276 * 23 22 21 44 44 H 1.09004 * 110.59644 * 80.81751 * 23 22 21 45 45 H 1.09004 * 110.03362 * 238.57348 * 24 20 11 46 46 H 1.09003 * 110.03050 * 359.95137 * 24 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.1846 -0.5490 -2.5061 6 6 2.7422 -2.0661 -1.0514 7 6 3.5550 -0.8275 -1.4346 8 1 4.1884 -0.3840 -0.6663 9 6 4.0908 -0.7547 -2.8413 10 8 3.3282 -0.6171 -3.7744 11 7 5.4173 -0.8434 -3.0626 12 6 5.9047 -0.7776 -4.3423 13 1 6.7345 -0.1255 -4.5712 14 6 5.3309 -1.5500 -5.3447 15 7 5.6338 -1.3235 -6.6033 16 14 4.1291 -2.9103 -4.9035 17 1 2.7396 -2.3984 -5.0148 18 1 4.3117 -4.0532 -5.8338 19 1 4.3806 -3.3605 -3.5109 20 6 6.3384 -1.0101 -1.9356 21 6 7.2683 0.2160 -1.8272 22 6 8.6331 -0.3799 -1.3992 23 6 8.6946 -1.7046 -2.1995 24 6 7.2448 -2.2309 -2.1718 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9564 0.8899 30 1 3.1299 1.4426 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.4751 0.3668 -3.0207 33 1 1.3360 -1.4016 -3.1682 34 1 0.1332 -0.4899 -2.2247 35 1 2.8412 -2.4368 -0.0312 36 1 2.5948 -2.8282 -1.8165 37 1 5.2328 -1.8625 -7.3031 38 1 5.7766 -1.1356 -1.0100 39 1 7.3558 0.7150 -2.7923 40 1 6.8996 0.9087 -1.0707 41 1 8.6495 -0.5753 -0.3270 42 1 9.4524 0.2809 -1.6825 43 1 9.3668 -2.4125 -1.7146 44 1 9.0134 -1.5186 -3.2252 45 1 7.1235 -2.9486 -1.3604 46 1 6.9987 -2.6998 -3.1246 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185948406.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:16 Heat of formation + Delta-G solvation = -33.807248 kcal Electronic energy + Delta-G solvation = -23931.599793 eV Core-core repulsion = 20821.037075 eV Total energy + Delta-G solvation = -3110.562718 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 1.85 seconds Orbital eigenvalues (eV) -41.52649 -39.53303 -38.18533 -35.40162 -34.31786 -33.76587 -29.71109 -29.47288 -28.70422 -27.70258 -27.27085 -24.31125 -23.39802 -21.69957 -21.50045 -20.78395 -19.23363 -18.58816 -17.92831 -17.22444 -16.36783 -16.22693 -15.86379 -15.61121 -15.32643 -14.94743 -14.79879 -14.26651 -14.11855 -14.01163 -13.78855 -13.49126 -13.37726 -13.29157 -13.20283 -12.67407 -12.41033 -12.39819 -12.29013 -12.11064 -11.97960 -11.88366 -11.81691 -11.78704 -11.44965 -11.38764 -11.30193 -10.95872 -10.78365 -10.55776 -10.08949 -9.40689 -8.39011 -6.19735 1.16186 1.27418 1.41936 1.87997 2.37147 2.65663 2.91070 3.06512 3.63480 3.73347 3.83549 3.85793 3.95214 4.01923 4.18013 4.28770 4.37843 4.47129 4.56940 4.61110 4.66683 4.75423 4.76931 4.79872 4.86269 4.89264 4.92569 4.96723 5.02607 5.06862 5.09474 5.11384 5.16690 5.20175 5.26587 5.28697 5.42535 5.48191 5.50960 5.54668 5.60673 5.66891 5.75027 5.96118 6.83649 6.98185 7.39720 7.96217 8.69918 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.015471 B = 0.007950 C = 0.006020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.346967 B = 3520.982262 C = 4650.011546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.050 4.050 3 C -0.144 4.144 4 C -0.083 4.083 5 C -0.099 4.099 6 C -0.147 4.147 7 C -0.184 4.184 8 H 0.143 0.857 9 C 0.476 3.524 10 O -0.583 6.583 11 N -0.473 5.473 12 C -0.309 4.309 13 H 0.062 0.938 14 C 0.037 3.963 15 N -0.923 5.923 16 Si 0.964 3.036 17 H -0.286 1.286 18 H -0.315 1.315 19 H -0.260 1.260 20 C 0.120 3.880 21 C -0.131 4.131 22 C -0.108 4.108 23 C -0.116 4.116 24 C -0.131 4.131 25 H 0.050 0.950 26 H 0.073 0.927 27 H 0.058 0.942 28 H 0.094 0.906 29 H 0.076 0.924 30 H 0.050 0.950 31 H 0.037 0.963 32 H 0.039 0.961 33 H 0.024 0.976 34 H 0.076 0.924 35 H 0.140 0.860 36 H 0.065 0.935 37 H 0.268 0.732 38 H 0.105 0.895 39 H 0.040 0.960 40 H 0.080 0.920 41 H 0.094 0.906 42 H 0.069 0.931 43 H 0.085 0.915 44 H 0.039 0.961 45 H 0.083 0.917 46 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.714 0.106 20.266 20.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.068 4.068 3 C -0.201 4.201 4 C -0.084 4.084 5 C -0.156 4.156 6 C -0.184 4.184 7 C -0.205 4.205 8 H 0.161 0.839 9 C 0.268 3.732 10 O -0.468 6.468 11 N -0.195 5.195 12 C -0.437 4.437 13 H 0.080 0.920 14 C -0.165 4.165 15 N -0.562 5.562 16 Si 0.796 3.204 17 H -0.213 1.213 18 H -0.245 1.245 19 H -0.184 1.184 20 C 0.017 3.983 21 C -0.169 4.169 22 C -0.145 4.145 23 C -0.154 4.154 24 C -0.169 4.169 25 H 0.069 0.931 26 H 0.092 0.908 27 H 0.077 0.923 28 H 0.112 0.888 29 H 0.095 0.905 30 H 0.069 0.931 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.043 0.957 34 H 0.094 0.906 35 H 0.158 0.842 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.123 0.877 39 H 0.059 0.941 40 H 0.098 0.902 41 H 0.112 0.888 42 H 0.088 0.912 43 H 0.103 0.897 44 H 0.057 0.943 45 H 0.102 0.898 46 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -3.067 0.145 19.620 19.858 hybrid contribution -0.246 -0.548 -1.438 1.558 sum -3.313 -0.403 18.182 18.486 Atomic orbital electron populations 1.21885 0.93988 1.02168 1.02144 1.20704 0.96531 0.95599 0.94004 1.21812 1.00967 0.95653 1.01704 1.21652 0.90317 0.98710 0.97695 1.21305 0.98774 1.00767 0.94756 1.23273 1.01726 0.90037 1.03352 1.22374 0.96422 1.06859 0.94866 0.83919 1.20562 0.83212 0.78894 0.90567 1.90486 1.57088 1.53022 1.46214 1.43970 1.04588 1.64938 1.05993 1.18438 1.17717 1.23662 0.83865 0.92038 1.25955 0.97349 0.98534 0.94633 1.69800 1.45485 1.40641 1.00310 0.85446 0.80376 0.76845 0.77737 1.21348 1.24476 1.18419 1.22173 0.91231 0.95547 0.89325 1.22689 0.96286 0.97202 1.00735 1.22412 0.95679 0.95770 1.00657 1.22250 0.95609 0.97918 0.99589 1.22410 0.95715 0.97481 1.01291 0.93112 0.90783 0.92278 0.88796 0.90539 0.93054 0.94387 0.94240 0.95695 0.90568 0.84181 0.91668 0.92245 0.87693 0.94144 0.90154 0.88761 0.91193 0.89674 0.94254 0.89840 0.94198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 8.20 71.98 0.59 -2.07 16 2 C -0.05 -1.05 2.99 -10.79 -0.03 -1.08 16 3 C -0.14 -3.05 9.03 71.98 0.65 -2.40 16 4 C -0.08 -2.49 1.91 -52.18 -0.10 -2.59 16 5 C -0.10 -3.61 7.73 71.98 0.56 -3.06 16 6 C -0.15 -4.30 9.53 30.60 0.29 -4.01 16 7 C -0.18 -6.23 4.16 -11.53 -0.05 -6.28 16 8 H 0.14 3.90 6.22 -2.39 -0.01 3.89 16 9 C 0.48 22.43 5.50 87.66 0.48 22.91 16 10 O -0.58 -32.58 8.94 -3.07 -0.03 -32.61 16 11 N -0.47 -22.53 2.06 -609.37 -1.26 -23.79 16 12 C -0.31 -17.90 7.90 84.04 0.66 -17.24 16 13 H 0.06 3.87 7.16 -2.91 -0.02 3.85 16 14 C 0.04 2.30 5.04 84.93 0.43 2.73 16 15 N -0.92 -60.08 13.96 21.67 0.30 -59.78 16 16 Si 0.96 53.22 24.58 68.60 1.69 54.90 16 17 H -0.29 -16.83 6.53 99.48 0.65 -16.18 16 18 H -0.31 -17.08 7.11 99.48 0.71 -16.37 16 19 H -0.26 -13.22 7.01 99.48 0.70 -12.52 16 20 C 0.12 4.29 3.15 45.71 0.14 4.44 16 21 C -0.13 -4.17 6.43 31.69 0.20 -3.96 16 22 C -0.11 -2.68 6.91 31.91 0.22 -2.46 16 23 C -0.12 -3.41 6.83 31.67 0.22 -3.19 16 24 C -0.13 -4.50 6.24 31.32 0.20 -4.31 16 25 H 0.05 1.05 6.45 -2.39 -0.02 1.03 16 26 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.06 1.04 8.14 -2.39 -0.02 1.03 16 28 H 0.09 1.56 7.90 -2.39 -0.02 1.54 16 29 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.05 1.12 7.29 -2.39 -0.02 1.10 16 31 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.04 1.64 7.27 -2.39 -0.02 1.63 16 33 H 0.02 1.06 7.01 -2.39 -0.02 1.04 16 34 H 0.08 2.25 5.59 -2.39 -0.01 2.23 16 35 H 0.14 2.86 8.05 -2.39 -0.02 2.84 16 36 H 0.06 2.30 8.05 -2.39 -0.02 2.28 16 37 H 0.27 16.64 8.31 -92.71 -0.77 15.87 16 38 H 0.11 3.06 5.58 -2.39 -0.01 3.05 16 39 H 0.04 1.61 6.73 -2.39 -0.02 1.60 16 40 H 0.08 2.13 8.14 -2.39 -0.02 2.12 16 41 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 42 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 43 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 44 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 45 H 0.08 2.32 8.14 -2.38 -0.02 2.30 16 46 H 0.04 1.73 7.11 -2.39 -0.02 1.71 16 Total: -1.00 -76.02 341.85 6.04 -69.98 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: 0.87 Total: 13.86 kcal Atomic # 6 Polarization: -27.03 SS G_CDS: 4.46 Total: -22.57 kcal Atomic # 7 Polarization: -82.61 SS G_CDS: -0.96 Total: -83.56 kcal Atomic # 8 Polarization: -32.58 SS G_CDS: -0.03 Total: -32.61 kcal Atomic # 14 Polarization: 53.22 SS G_CDS: 1.69 Total: 54.90 kcal Total: -76.02 6.04 -69.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185948406.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.173 kcal (2) G-P(sol) polarization free energy of solvation -76.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds