Wall clock time and date at job start Tue Mar 31 2020 01:03:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.46710 * 2 1 4 4 C 1.53005 * 109.47555 * 119.99738 * 2 1 3 5 5 C 1.53010 * 115.55759 * 323.96491 * 4 2 1 6 6 C 1.52992 * 117.49988 * 109.64696 * 4 2 1 7 7 C 1.52994 * 117.50231 * 178.27521 * 4 2 1 8 8 H 1.08991 * 117.50317 * 144.99932 * 7 4 2 9 9 C 1.50699 * 117.49851 * 359.97438 * 7 4 2 10 10 O 1.21299 * 120.00256 * 332.53830 * 9 7 4 11 11 N 1.34778 * 120.00086 * 152.53890 * 9 7 4 12 12 C 1.37097 * 119.99858 * 0.02562 * 11 9 7 13 13 H 1.08001 * 120.00030 * 231.75347 * 12 11 9 14 14 C 1.38956 * 120.00066 * 51.46938 * 12 11 9 15 15 N 1.31411 * 119.99647 * 16.09241 * 14 12 11 16 16 Si 1.86798 * 120.00048 * 196.09136 * 14 12 11 17 17 H 1.48501 * 109.46931 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.46865 * 120.00098 * 16 14 12 19 19 H 1.48501 * 109.47171 * 240.00415 * 16 14 12 20 20 C 1.46496 * 119.99951 * 180.02562 * 11 9 7 21 21 C 1.54270 * 110.03324 * 233.48708 * 20 11 9 22 22 C 1.54888 * 104.19629 * 217.10915 * 21 20 11 23 23 C 1.54881 * 102.74949 * 37.94127 * 22 21 20 24 24 C 1.53877 * 110.03308 * 116.32328 * 20 11 9 25 25 H 1.08999 * 109.46542 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47223 * 299.99820 * 1 2 3 27 27 H 1.08998 * 109.47288 * 60.00410 * 1 2 3 28 28 H 1.08998 * 109.47613 * 240.00514 * 2 1 3 29 29 H 1.09004 * 109.46913 * 177.83395 * 3 2 1 30 30 H 1.09001 * 109.47128 * 297.82989 * 3 2 1 31 31 H 1.09003 * 109.47146 * 57.83691 * 3 2 1 32 32 H 1.08999 * 109.46685 * 274.30766 * 5 4 2 33 33 H 1.09001 * 109.46799 * 34.30411 * 5 4 2 34 34 H 1.08997 * 109.46410 * 154.30874 * 5 4 2 35 35 H 1.09004 * 117.49595 * 0.02562 * 6 4 2 36 36 H 1.08999 * 117.50480 * 214.98439 * 6 4 2 37 37 H 0.97003 * 120.00500 * 6.13770 * 15 14 12 38 38 H 1.09001 * 110.01990 * 354.92997 * 20 11 9 39 39 H 1.09006 * 110.48116 * 335.78506 * 21 20 11 40 40 H 1.09000 * 110.48599 * 98.42676 * 21 20 11 41 41 H 1.09003 * 110.75372 * 279.62543 * 22 21 20 42 42 H 1.09002 * 110.75379 * 156.26021 * 22 21 20 43 43 H 1.09011 * 110.48664 * 203.38227 * 23 22 21 44 44 H 1.08996 * 110.49107 * 80.73611 * 23 22 21 45 45 H 1.09003 * 110.03073 * 238.57023 * 24 20 11 46 46 H 1.09003 * 110.03176 * 359.97438 * 24 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 1.2078 -0.5151 2.5166 6 6 2.7058 -2.0850 1.0554 7 6 3.5545 -0.8635 1.4141 8 1 3.9580 -0.8100 2.4251 9 6 4.4296 -0.2831 0.3332 10 8 4.0097 -0.1868 -0.8007 11 7 5.6789 0.1290 0.6263 12 6 6.1537 0.0197 1.9078 13 1 6.5876 0.8786 2.3980 14 6 6.0714 -1.1948 2.5780 15 7 5.8414 -2.3011 1.9071 16 14 6.2879 -1.2548 4.4324 17 1 6.5340 0.1165 4.9466 18 1 5.0573 -1.8036 5.0568 19 1 7.4437 -2.1246 4.7680 20 6 6.5294 0.6937 -0.4243 21 6 7.8779 -0.0541 -0.4716 22 6 8.9148 1.0522 -0.7877 23 6 8.3870 2.2585 0.0278 24 6 6.8531 2.1642 -0.1069 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 1.8934 -0.5137 -0.8900 29 1 3.1292 1.4429 0.0388 30 1 1.7086 1.9451 -0.9088 31 1 1.6452 1.9675 0.8700 32 1 1.5300 0.3973 3.0184 33 1 0.1544 -0.4304 2.2496 34 1 1.3463 -1.3654 3.1843 35 1 2.7807 -2.4683 0.0377 36 1 2.5510 -2.8355 1.8305 37 1 5.8175 -2.2844 0.9376 38 1 6.0277 0.6218 -1.3894 39 1 8.0929 -0.5141 0.4930 40 1 7.8697 -0.8060 -1.2606 41 1 8.9234 1.2804 -1.8535 42 1 9.9078 0.7598 -0.4461 43 1 8.7503 3.1945 -0.3970 44 1 8.6842 2.1720 1.0728 45 1 6.5093 2.8058 -0.9183 46 1 6.3771 2.4577 0.8287 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185948424.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:23 Heat of formation + Delta-G solvation = -25.452257 kcal Electronic energy + Delta-G solvation = -24192.704453 eV Core-core repulsion = 21082.504034 eV Total energy + Delta-G solvation = -3110.200418 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.74596 -37.94938 -36.00313 -34.37533 -32.64547 -31.12788 -28.17017 -28.04178 -27.04561 -26.36810 -24.55458 -22.84032 -21.84389 -20.11848 -19.52696 -19.29357 -17.81879 -16.65656 -16.06902 -15.10203 -14.76831 -14.61772 -14.24422 -13.92331 -13.73860 -13.22917 -13.04225 -12.85482 -12.66947 -12.39685 -12.16661 -11.89802 -11.44867 -11.27368 -11.09609 -11.09198 -10.91961 -10.75603 -10.58806 -10.48636 -10.46269 -10.36262 -10.30257 -10.16537 -10.07899 -9.96256 -9.53317 -9.12293 -9.05452 -8.49759 -8.19062 -7.49926 -6.54429 -4.13943 3.27818 3.29453 3.44725 3.73756 4.18944 4.61413 4.81445 5.04403 5.26745 5.29791 5.35128 5.43529 5.48330 5.72290 5.74296 5.92992 5.97252 6.00331 6.04635 6.15389 6.18933 6.21671 6.23320 6.28320 6.30114 6.34236 6.39147 6.43493 6.46280 6.49048 6.54307 6.57230 6.60831 6.61726 6.66682 6.83501 6.94164 6.99369 7.07731 7.14506 7.17170 7.27621 7.81440 8.25076 8.37338 9.17975 9.50803 9.94088 10.70078 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.014948 B = 0.008287 C = 0.006127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.767698 B = 3377.829802 C = 4568.859338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.050 4.050 3 C -0.137 4.137 4 C -0.116 4.116 5 C -0.115 4.115 6 C -0.136 4.136 7 C -0.131 4.131 8 H 0.128 0.872 9 C 0.526 3.474 10 O -0.600 6.600 11 N -0.454 5.454 12 C -0.417 4.417 13 H 0.072 0.928 14 C 0.017 3.983 15 N -0.868 5.868 16 Si 1.071 2.929 17 H -0.284 1.284 18 H -0.281 1.281 19 H -0.285 1.285 20 C 0.131 3.869 21 C -0.124 4.124 22 C -0.121 4.121 23 C -0.116 4.116 24 C -0.126 4.126 25 H 0.049 0.951 26 H 0.052 0.948 27 H 0.045 0.955 28 H 0.086 0.914 29 H 0.071 0.929 30 H 0.038 0.962 31 H 0.035 0.965 32 H 0.054 0.946 33 H 0.061 0.939 34 H 0.052 0.948 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.277 0.723 38 H 0.077 0.923 39 H 0.088 0.912 40 H 0.049 0.951 41 H 0.057 0.943 42 H 0.058 0.942 43 H 0.052 0.948 44 H 0.065 0.935 45 H 0.051 0.949 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.535 4.475 -0.038 5.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.068 4.068 3 C -0.195 4.195 4 C -0.117 4.117 5 C -0.172 4.172 6 C -0.173 4.173 7 C -0.151 4.151 8 H 0.146 0.854 9 C 0.318 3.682 10 O -0.486 6.486 11 N -0.174 5.174 12 C -0.546 4.546 13 H 0.090 0.910 14 C -0.193 4.193 15 N -0.500 5.500 16 Si 0.897 3.103 17 H -0.209 1.209 18 H -0.207 1.207 19 H -0.211 1.211 20 C 0.027 3.973 21 C -0.162 4.162 22 C -0.159 4.159 23 C -0.154 4.154 24 C -0.164 4.164 25 H 0.068 0.932 26 H 0.071 0.929 27 H 0.064 0.936 28 H 0.104 0.896 29 H 0.090 0.910 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.104 0.896 36 H 0.107 0.893 37 H 0.088 0.912 38 H 0.095 0.905 39 H 0.106 0.894 40 H 0.068 0.932 41 H 0.075 0.925 42 H 0.077 0.923 43 H 0.071 0.929 44 H 0.083 0.917 45 H 0.070 0.930 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.766 3.518 0.701 4.530 hybrid contribution 0.356 0.890 -1.199 1.535 sum -2.410 4.408 -0.498 5.048 Atomic orbital electron populations 1.21946 0.96779 1.00836 1.00655 1.20553 0.93175 0.96199 0.96856 1.21860 1.03159 0.95368 0.99068 1.21532 0.93662 0.99966 0.96533 1.21415 0.99098 1.01332 0.95385 1.22885 1.02503 0.90233 1.01720 1.22286 0.89881 1.01600 1.01368 0.85396 1.19583 0.81765 0.79096 0.87784 1.90486 1.74076 1.60996 1.23049 1.43514 1.09369 1.56398 1.08077 1.19992 1.47069 0.98148 0.89382 0.91043 1.26392 0.94442 0.91330 1.07150 1.70629 1.41136 1.27839 1.10401 0.83466 0.77418 0.75776 0.73617 1.20927 1.20705 1.21148 1.21590 0.91258 0.91807 0.92615 1.22600 0.94180 0.96948 1.02503 1.22416 0.98339 0.96133 0.98995 1.22256 0.95815 0.97135 1.00173 1.22396 0.95583 0.97057 1.01375 0.93232 0.92909 0.93586 0.89553 0.90992 0.94276 0.94566 0.92696 0.92002 0.92878 0.89593 0.89335 0.91159 0.90511 0.89371 0.93196 0.92467 0.92300 0.92894 0.91665 0.93015 0.91178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 8.27 37.16 0.31 -1.87 16 2 C -0.05 -0.92 2.17 -90.61 -0.20 -1.12 16 3 C -0.14 -2.61 8.52 37.16 0.32 -2.30 16 4 C -0.12 -2.23 1.87 -154.51 -0.29 -2.52 16 5 C -0.12 -1.88 9.53 37.16 0.35 -1.52 16 6 C -0.14 -2.82 9.41 -26.73 -0.25 -3.08 16 7 C -0.13 -2.96 3.63 -91.77 -0.33 -3.29 16 8 H 0.13 3.11 5.30 -51.93 -0.28 2.84 16 9 C 0.53 12.86 4.42 -10.99 -0.05 12.81 16 10 O -0.60 -15.25 11.78 5.54 0.07 -15.18 16 11 N -0.45 -10.90 2.07 -106.54 -0.22 -11.12 16 12 C -0.42 -10.23 6.73 -14.93 -0.10 -10.33 16 13 H 0.07 1.77 7.45 -52.49 -0.39 1.38 16 14 C 0.02 0.41 3.16 -17.47 -0.06 0.35 16 15 N -0.87 -22.86 12.15 55.50 0.67 -22.18 16 16 Si 1.07 22.31 29.76 -169.99 -5.06 17.25 16 17 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 18 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 19 H -0.29 -5.95 7.11 56.52 0.40 -5.55 16 20 C 0.13 2.84 3.29 -66.81 -0.22 2.62 16 21 C -0.12 -2.48 6.40 -25.07 -0.16 -2.64 16 22 C -0.12 -1.96 6.91 -24.74 -0.17 -2.13 16 23 C -0.12 -1.89 6.83 -25.08 -0.17 -2.06 16 24 C -0.13 -2.36 6.29 -25.61 -0.16 -2.52 16 25 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.05 0.73 6.41 -51.93 -0.33 0.40 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.09 1.83 6.44 -51.93 -0.33 1.50 16 29 H 0.07 1.59 4.78 -51.93 -0.25 1.35 16 30 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.06 0.87 5.58 -51.93 -0.29 0.58 16 34 H 0.05 0.83 7.90 -51.93 -0.41 0.42 16 35 H 0.09 1.86 8.06 -51.93 -0.42 1.45 16 36 H 0.09 1.75 8.05 -51.93 -0.42 1.34 16 37 H 0.28 7.71 7.23 -40.82 -0.30 7.41 16 38 H 0.08 1.76 6.96 -51.93 -0.36 1.40 16 39 H 0.09 1.99 6.86 -51.93 -0.36 1.64 16 40 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 41 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 43 H 0.05 0.74 8.14 -51.92 -0.42 0.32 16 44 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 46 H 0.07 1.42 7.22 -51.93 -0.38 1.05 16 LS Contribution 342.31 15.07 5.16 5.16 Total: -1.00 -26.27 342.31 -8.51 -34.78 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: -7.95 Total: 10.90 kcal Atomic # 6 Polarization: -18.41 SS G_CDS: -1.18 Total: -19.59 kcal Atomic # 7 Polarization: -33.76 SS G_CDS: 0.45 Total: -33.30 kcal Atomic # 8 Polarization: -15.25 SS G_CDS: 0.07 Total: -15.18 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.06 Total: 17.25 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -26.27 -8.51 -34.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185948424.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.326 kcal (2) G-P(sol) polarization free energy of solvation -26.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds