Wall clock time and date at job start Tue Mar 31 2020 01:02:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47513 * 2 1 4 4 C 1.52994 * 109.47210 * 120.00329 * 2 1 3 5 5 C 1.53007 * 115.56087 * 272.54581 * 4 2 1 6 6 C 1.53001 * 117.50128 * 126.85897 * 4 2 1 7 7 C 1.53005 * 117.50159 * 58.23275 * 4 2 1 8 8 H 1.09002 * 117.51714 * 214.97033 * 7 4 2 9 9 C 1.50693 * 117.49544 * 0.02562 * 7 4 2 10 10 O 1.21278 * 120.00555 * 45.17737 * 9 7 4 11 11 N 1.34782 * 119.99882 * 225.17957 * 9 7 4 12 12 C 1.46500 * 120.00257 * 179.97438 * 11 9 7 13 13 C 1.50695 * 109.47288 * 89.99707 * 12 11 9 14 14 H 1.08011 * 119.99940 * 0.02562 * 13 12 11 15 15 C 1.37874 * 120.00188 * 179.72581 * 13 12 11 16 16 N 1.31508 * 120.00021 * 0.27382 * 15 13 12 17 17 Si 1.86804 * 120.00034 * 180.28030 * 15 13 12 18 18 H 1.48503 * 109.46966 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47391 * 119.99982 * 17 15 13 20 20 H 1.48502 * 109.46835 * 240.00040 * 17 15 13 21 21 C 1.46498 * 119.99968 * 0.02562 * 11 9 7 22 22 C 1.52996 * 109.47277 * 270.00057 * 21 11 9 23 23 C 1.53000 * 117.50283 * 243.62042 * 22 21 11 24 24 C 1.52996 * 60.00000 * 252.50936 * 23 22 21 25 25 H 1.09000 * 109.46793 * 299.32936 * 1 2 3 26 26 H 1.08997 * 109.46951 * 59.32872 * 1 2 3 27 27 H 1.08994 * 109.47209 * 179.33148 * 1 2 3 28 28 H 1.09005 * 109.47363 * 240.00318 * 2 1 3 29 29 H 1.08997 * 109.46597 * 292.14160 * 3 2 1 30 30 H 1.08999 * 109.46646 * 52.13776 * 3 2 1 31 31 H 1.08997 * 109.47101 * 172.13905 * 3 2 1 32 32 H 1.09006 * 109.46997 * 205.68919 * 5 4 2 33 33 H 1.08998 * 109.46922 * 325.68820 * 5 4 2 34 34 H 1.08994 * 109.47200 * 85.69006 * 5 4 2 35 35 H 1.09005 * 117.50064 * 145.02020 * 6 4 2 36 36 H 1.09000 * 117.52041 * 359.97438 * 6 4 2 37 37 H 1.09005 * 109.46901 * 330.00312 * 12 11 9 38 38 H 1.08997 * 109.47092 * 210.00440 * 12 11 9 39 39 H 0.97000 * 120.00266 * 180.02562 * 16 15 13 40 40 H 1.09004 * 109.47041 * 30.00059 * 21 11 9 41 41 H 1.08999 * 109.47701 * 149.99875 * 21 11 9 42 42 H 1.09005 * 115.54840 * 29.33181 * 22 21 11 43 43 H 1.09003 * 117.49416 * 0.02562 * 23 22 21 44 44 H 1.08999 * 117.50141 * 145.01804 * 23 22 21 45 45 H 1.09000 * 117.49670 * 252.50254 * 24 23 22 46 46 H 1.08998 * 117.50123 * 107.48877 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 2.2022 0.1514 2.4954 6 6 3.0430 -1.8590 1.0480 7 6 1.6018 -2.1727 1.4553 8 1 1.4293 -2.5062 2.4786 9 6 0.7015 -2.7825 0.4120 10 8 0.9452 -2.6262 -0.7657 11 7 -0.3747 -3.5016 0.7878 12 6 -1.2504 -4.0940 -0.2263 13 6 -0.7597 -5.4774 -0.5676 14 1 0.1166 -5.8757 -0.0777 15 6 -1.4330 -6.2370 -1.5007 16 7 -2.5003 -5.7523 -2.0968 17 14 -0.8293 -7.9548 -1.9180 18 1 0.3818 -8.2624 -1.1155 19 1 -1.8936 -8.9427 -1.6074 20 1 -0.4956 -8.0247 -3.3634 21 6 -0.6695 -3.6900 2.2104 22 6 0.0312 -4.9536 2.7135 23 6 -0.8513 -6.1021 3.2066 24 6 -0.0574 -5.2625 4.2094 25 1 -0.3633 0.5034 0.8960 26 1 -0.3633 0.5242 -0.8839 27 1 -0.3633 -1.0275 -0.0120 28 1 1.8933 -0.5138 -0.8900 29 1 1.7960 1.9141 -0.9519 30 1 1.5665 1.9953 0.8113 31 1 3.1209 1.4457 0.1405 32 1 2.9556 -0.2867 3.1502 33 1 2.5158 1.1525 2.1996 34 1 1.2510 0.2100 3.0243 35 1 3.8184 -1.9858 1.8035 36 1 3.3394 -2.0942 0.0258 37 1 -1.2401 -3.4736 -1.1225 38 1 -2.2670 -4.1546 0.1620 39 1 -2.9742 -6.2868 -2.7530 40 1 -0.3116 -2.8276 2.7729 41 1 -1.7459 -3.7922 2.3481 42 1 0.9565 -5.2143 2.1997 43 1 -1.9312 -5.9575 3.1721 44 1 -0.5068 -7.1187 3.0171 45 1 0.8094 -5.7268 4.6797 46 1 -0.6148 -4.5655 4.8351 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186199233.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:28 Heat of formation + Delta-G solvation = 4.689260 kcal Electronic energy + Delta-G solvation = -23358.875448 eV Core-core repulsion = 20249.982064 eV Total energy + Delta-G solvation = -3108.893384 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -40.10718 -37.75680 -36.66608 -34.23817 -33.22831 -32.43844 -28.81281 -27.87272 -26.68613 -26.08537 -24.12633 -22.33440 -22.01369 -21.69802 -20.49344 -18.81819 -17.75441 -16.56203 -16.43339 -15.63786 -15.14580 -14.72500 -14.54186 -14.15278 -13.82032 -13.59445 -13.55077 -12.99542 -12.56646 -12.39628 -12.31959 -12.28209 -11.94974 -11.55655 -11.48613 -11.33044 -11.21724 -11.17201 -10.99161 -10.86346 -10.81589 -10.60154 -10.39539 -10.24232 -9.92839 -9.77047 -9.55879 -9.47004 -9.43239 -8.73326 -8.38202 -7.60144 -5.98938 -4.01493 3.15120 3.31773 3.39591 3.43549 3.88123 4.22248 4.24233 4.48888 4.78043 4.91662 5.01830 5.09822 5.17141 5.26263 5.32101 5.36011 5.39804 5.52128 5.54293 5.63295 5.73480 5.81046 5.84624 5.86736 5.89724 5.92293 5.96617 6.02998 6.10549 6.13766 6.16077 6.20754 6.28903 6.31887 6.44077 6.49828 6.65731 6.71541 6.75809 7.13162 7.48986 7.62690 7.98359 8.30488 8.49535 8.97921 9.19536 9.62765 11.09500 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.016369 B = 0.005984 C = 0.004942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.160290 B = 4677.631130 C = 5664.355430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.060 4.060 3 C -0.142 4.142 4 C -0.092 4.092 5 C -0.119 4.119 6 C -0.145 4.145 7 C -0.186 4.186 8 H 0.116 0.884 9 C 0.542 3.458 10 O -0.539 6.539 11 N -0.594 5.594 12 C 0.248 3.752 13 C -0.512 4.512 14 H 0.058 0.942 15 C 0.059 3.941 16 N -0.897 5.897 17 Si 0.893 3.107 18 H -0.274 1.274 19 H -0.285 1.285 20 H -0.284 1.284 21 C 0.146 3.854 22 C -0.153 4.153 23 C -0.164 4.164 24 C -0.191 4.191 25 H 0.044 0.956 26 H 0.050 0.950 27 H 0.069 0.931 28 H 0.087 0.913 29 H 0.051 0.949 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.068 0.932 34 H 0.058 0.942 35 H 0.095 0.905 36 H 0.103 0.897 37 H 0.042 0.958 38 H 0.029 0.971 39 H 0.261 0.739 40 H 0.069 0.931 41 H 0.074 0.926 42 H 0.103 0.897 43 H 0.094 0.906 44 H 0.089 0.911 45 H 0.087 0.913 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.880 9.743 12.280 17.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.078 4.078 3 C -0.200 4.200 4 C -0.092 4.092 5 C -0.176 4.176 6 C -0.182 4.182 7 C -0.208 4.208 8 H 0.134 0.866 9 C 0.330 3.670 10 O -0.417 6.417 11 N -0.324 5.324 12 C 0.129 3.871 13 C -0.551 4.551 14 H 0.076 0.924 15 C -0.142 4.142 16 N -0.537 5.537 17 Si 0.722 3.278 18 H -0.199 1.199 19 H -0.211 1.211 20 H -0.210 1.210 21 C 0.022 3.978 22 C -0.173 4.173 23 C -0.201 4.201 24 C -0.229 4.229 25 H 0.063 0.937 26 H 0.069 0.931 27 H 0.087 0.913 28 H 0.105 0.895 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.077 0.923 35 H 0.113 0.887 36 H 0.121 0.879 37 H 0.060 0.940 38 H 0.047 0.953 39 H 0.071 0.929 40 H 0.087 0.913 41 H 0.092 0.908 42 H 0.121 0.879 43 H 0.112 0.888 44 H 0.107 0.893 45 H 0.106 0.894 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 6.826 9.771 11.500 16.562 hybrid contribution 0.175 -1.380 -0.142 1.398 sum 7.001 8.391 11.358 15.761 Atomic orbital electron populations 1.21926 0.95007 1.03098 1.00443 1.20655 0.95922 0.94845 0.96369 1.21890 1.00585 0.96271 1.01221 1.21492 1.02334 0.88073 0.97328 1.21472 1.01499 0.99528 0.95083 1.23170 0.90584 1.01259 1.03180 1.22624 0.98094 0.99784 1.00273 0.86620 1.19188 0.80921 0.78385 0.88481 1.90652 1.71757 1.60871 1.18433 1.48114 1.27002 1.50713 1.06607 1.19266 0.88000 0.93354 0.86463 1.21434 1.11991 0.99401 1.22259 0.92406 1.24907 0.95023 0.98327 0.95930 1.69937 1.18754 1.37329 1.27704 0.86512 0.78624 0.84419 0.78284 1.19899 1.21087 1.21024 1.21005 0.99509 0.94901 0.82420 1.22762 1.01788 0.97893 0.94810 1.22871 0.98258 0.96363 1.02570 1.22962 1.03091 1.04412 0.92413 0.93709 0.93114 0.91253 0.89477 0.92980 0.92812 0.92832 0.92644 0.91285 0.92334 0.88711 0.87856 0.93961 0.95317 0.92943 0.91277 0.90769 0.87867 0.88802 0.89266 0.89440 0.89234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 8.71 37.16 0.32 -2.01 16 2 C -0.06 -0.87 2.24 -90.62 -0.20 -1.07 16 3 C -0.14 -1.63 7.88 37.16 0.29 -1.34 16 4 C -0.09 -1.23 1.94 -154.50 -0.30 -1.53 16 5 C -0.12 -1.23 9.49 37.16 0.35 -0.88 16 6 C -0.14 -2.04 9.34 -26.73 -0.25 -2.29 16 7 C -0.19 -2.92 5.03 -91.77 -0.46 -3.38 16 8 H 0.12 1.61 6.17 -51.93 -0.32 1.29 16 9 C 0.54 11.14 4.74 -10.99 -0.05 11.09 16 10 O -0.54 -13.11 13.28 5.56 0.07 -13.04 16 11 N -0.59 -12.46 2.46 -175.07 -0.43 -12.89 16 12 C 0.25 6.44 5.20 -5.20 -0.03 6.42 16 13 C -0.51 -14.38 9.39 -34.44 -0.32 -14.71 16 14 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 15 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 16 N -0.90 -26.79 13.29 55.43 0.74 -26.06 16 17 Si 0.89 22.13 29.54 -169.99 -5.02 17.10 16 18 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 21 C 0.15 2.42 5.36 -4.05 -0.02 2.40 16 22 C -0.15 -2.46 5.93 -90.62 -0.54 -2.99 16 23 C -0.16 -2.51 10.18 -26.73 -0.27 -2.78 16 24 C -0.19 -2.41 10.25 -26.73 -0.27 -2.69 16 25 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.07 1.32 4.66 -51.93 -0.24 1.08 16 28 H 0.09 1.52 6.79 -51.93 -0.35 1.17 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.05 0.55 7.04 -51.93 -0.37 0.18 16 31 H 0.05 0.56 7.99 -51.93 -0.42 0.14 16 32 H 0.05 0.51 7.90 -51.93 -0.41 0.10 16 33 H 0.07 0.64 5.69 -51.93 -0.30 0.35 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.09 1.09 8.05 -51.93 -0.42 0.67 16 36 H 0.10 1.65 7.76 -51.93 -0.40 1.25 16 37 H 0.04 1.24 7.42 -51.93 -0.39 0.86 16 38 H 0.03 0.76 7.89 -51.93 -0.41 0.35 16 39 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 40 H 0.07 0.96 6.20 -51.93 -0.32 0.64 16 41 H 0.07 1.22 7.63 -51.93 -0.40 0.82 16 42 H 0.10 1.87 8.14 -51.93 -0.42 1.44 16 43 H 0.09 1.43 8.03 -51.93 -0.42 1.02 16 44 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 45 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 46 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 LS Contribution 361.49 15.07 5.45 5.45 Total: -1.00 -31.32 361.49 -9.12 -40.44 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -8.08 Total: 3.16 kcal Atomic # 6 Polarization: -12.31 SS G_CDS: -1.85 Total: -14.16 kcal Atomic # 7 Polarization: -39.26 SS G_CDS: 0.31 Total: -38.95 kcal Atomic # 8 Polarization: -13.11 SS G_CDS: 0.07 Total: -13.04 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.32 -9.12 -40.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186199233.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.131 kcal (2) G-P(sol) polarization free energy of solvation -31.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds