Wall clock time and date at job start Tue Mar 31 2020 01:02:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47513 * 2 1 4 4 C 1.52994 * 109.47210 * 120.00329 * 2 1 3 5 5 C 1.53007 * 115.56087 * 272.54581 * 4 2 1 6 6 C 1.53001 * 117.50128 * 126.85897 * 4 2 1 7 7 C 1.53005 * 117.50159 * 58.23275 * 4 2 1 8 8 H 1.09002 * 117.51714 * 214.97033 * 7 4 2 9 9 C 1.50693 * 117.49544 * 0.02562 * 7 4 2 10 10 O 1.21278 * 120.00555 * 45.17737 * 9 7 4 11 11 N 1.34782 * 119.99882 * 225.17957 * 9 7 4 12 12 C 1.46500 * 120.00257 * 179.97438 * 11 9 7 13 13 C 1.50695 * 109.47288 * 89.99707 * 12 11 9 14 14 H 1.08011 * 119.99940 * 0.02562 * 13 12 11 15 15 C 1.37874 * 120.00188 * 179.72581 * 13 12 11 16 16 N 1.31508 * 120.00021 * 0.27382 * 15 13 12 17 17 Si 1.86804 * 120.00034 * 180.28030 * 15 13 12 18 18 H 1.48503 * 109.46966 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47391 * 119.99982 * 17 15 13 20 20 H 1.48502 * 109.46835 * 240.00040 * 17 15 13 21 21 C 1.46498 * 119.99968 * 0.02562 * 11 9 7 22 22 C 1.52996 * 109.47277 * 270.00057 * 21 11 9 23 23 C 1.53000 * 117.50283 * 243.62042 * 22 21 11 24 24 C 1.52996 * 60.00000 * 252.50936 * 23 22 21 25 25 H 1.09000 * 109.46793 * 299.32936 * 1 2 3 26 26 H 1.08997 * 109.46951 * 59.32872 * 1 2 3 27 27 H 1.08994 * 109.47209 * 179.33148 * 1 2 3 28 28 H 1.09005 * 109.47363 * 240.00318 * 2 1 3 29 29 H 1.08997 * 109.46597 * 292.14160 * 3 2 1 30 30 H 1.08999 * 109.46646 * 52.13776 * 3 2 1 31 31 H 1.08997 * 109.47101 * 172.13905 * 3 2 1 32 32 H 1.09006 * 109.46997 * 205.68919 * 5 4 2 33 33 H 1.08998 * 109.46922 * 325.68820 * 5 4 2 34 34 H 1.08994 * 109.47200 * 85.69006 * 5 4 2 35 35 H 1.09005 * 117.50064 * 145.02020 * 6 4 2 36 36 H 1.09000 * 117.52041 * 359.97438 * 6 4 2 37 37 H 1.09005 * 109.46901 * 330.00312 * 12 11 9 38 38 H 1.08997 * 109.47092 * 210.00440 * 12 11 9 39 39 H 0.97000 * 120.00266 * 180.02562 * 16 15 13 40 40 H 1.09004 * 109.47041 * 30.00059 * 21 11 9 41 41 H 1.08999 * 109.47701 * 149.99875 * 21 11 9 42 42 H 1.09005 * 115.54840 * 29.33181 * 22 21 11 43 43 H 1.09003 * 117.49416 * 0.02562 * 23 22 21 44 44 H 1.08999 * 117.50141 * 145.01804 * 23 22 21 45 45 H 1.09000 * 117.49670 * 252.50254 * 24 23 22 46 46 H 1.08998 * 117.50123 * 107.48877 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 2.2022 0.1514 2.4954 6 6 3.0430 -1.8590 1.0480 7 6 1.6018 -2.1727 1.4553 8 1 1.4293 -2.5062 2.4786 9 6 0.7015 -2.7825 0.4120 10 8 0.9452 -2.6262 -0.7657 11 7 -0.3747 -3.5016 0.7878 12 6 -1.2504 -4.0940 -0.2263 13 6 -0.7597 -5.4774 -0.5676 14 1 0.1166 -5.8757 -0.0777 15 6 -1.4330 -6.2370 -1.5007 16 7 -2.5003 -5.7523 -2.0968 17 14 -0.8293 -7.9548 -1.9180 18 1 0.3818 -8.2624 -1.1155 19 1 -1.8936 -8.9427 -1.6074 20 1 -0.4956 -8.0247 -3.3634 21 6 -0.6695 -3.6900 2.2104 22 6 0.0312 -4.9536 2.7135 23 6 -0.8513 -6.1021 3.2066 24 6 -0.0574 -5.2625 4.2094 25 1 -0.3633 0.5034 0.8960 26 1 -0.3633 0.5242 -0.8839 27 1 -0.3633 -1.0275 -0.0120 28 1 1.8933 -0.5138 -0.8900 29 1 1.7960 1.9141 -0.9519 30 1 1.5665 1.9953 0.8113 31 1 3.1209 1.4457 0.1405 32 1 2.9556 -0.2867 3.1502 33 1 2.5158 1.1525 2.1996 34 1 1.2510 0.2100 3.0243 35 1 3.8184 -1.9858 1.8035 36 1 3.3394 -2.0942 0.0258 37 1 -1.2401 -3.4736 -1.1225 38 1 -2.2670 -4.1546 0.1620 39 1 -2.9742 -6.2868 -2.7530 40 1 -0.3116 -2.8276 2.7729 41 1 -1.7459 -3.7922 2.3481 42 1 0.9565 -5.2143 2.1997 43 1 -1.9312 -5.9575 3.1721 44 1 -0.5068 -7.1187 3.0171 45 1 0.8094 -5.7268 4.6797 46 1 -0.6148 -4.5655 4.8351 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186199233.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:26 Heat of formation + Delta-G solvation = -12.100081 kcal Electronic energy + Delta-G solvation = -23359.603488 eV Core-core repulsion = 20249.982064 eV Total energy + Delta-G solvation = -3109.621425 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.51525 -39.06598 -38.03762 -35.97573 -34.64881 -34.27159 -30.24224 -29.37301 -27.74485 -27.58107 -25.91662 -23.53548 -23.33204 -23.10129 -21.79722 -20.14774 -19.11522 -18.59440 -18.00627 -17.19897 -16.48313 -16.39786 -16.03574 -15.59294 -15.08156 -14.89253 -14.71759 -14.40985 -14.01753 -13.77500 -13.60870 -13.48989 -13.33742 -13.29955 -12.96105 -12.72739 -12.63326 -12.53794 -12.39362 -12.27241 -12.24121 -12.04742 -11.99381 -11.61537 -11.53295 -11.22076 -10.95007 -10.76888 -10.64697 -10.55901 -10.32884 -9.38138 -8.20738 -6.32641 1.32012 1.34358 1.45661 1.70606 2.29379 2.43351 2.98922 3.03493 3.08753 3.58189 3.76080 3.88755 3.94147 4.01068 4.08728 4.18514 4.26420 4.36472 4.41888 4.49075 4.59318 4.64716 4.79396 4.80393 4.82768 4.87420 4.89446 4.98371 5.03719 5.04836 5.08343 5.12142 5.16280 5.22207 5.26863 5.27646 5.34419 5.37203 5.42427 5.46569 5.62037 5.67468 5.90653 6.10460 6.74143 6.86464 7.32146 7.58762 8.86722 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.016369 B = 0.005984 C = 0.004942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.160290 B = 4677.631130 C = 5664.355430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.063 4.063 3 C -0.135 4.135 4 C -0.074 4.074 5 C -0.114 4.114 6 C -0.142 4.142 7 C -0.197 4.197 8 H 0.142 0.858 9 C 0.536 3.464 10 O -0.591 6.591 11 N -0.600 5.600 12 C 0.267 3.733 13 C -0.520 4.520 14 H 0.050 0.950 15 C 0.006 3.994 16 N -0.931 5.931 17 Si 0.960 3.040 18 H -0.270 1.270 19 H -0.270 1.270 20 H -0.283 1.283 21 C 0.145 3.855 22 C -0.174 4.174 23 C -0.186 4.186 24 C -0.143 4.143 25 H 0.070 0.930 26 H 0.043 0.957 27 H 0.030 0.970 28 H 0.045 0.955 29 H 0.049 0.951 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.067 0.933 35 H 0.132 0.868 36 H 0.073 0.927 37 H -0.005 1.005 38 H 0.016 0.984 39 H 0.265 0.735 40 H 0.105 0.895 41 H 0.072 0.928 42 H 0.078 0.922 43 H 0.089 0.911 44 H 0.080 0.920 45 H 0.106 0.894 46 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.434 10.559 15.751 20.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.082 4.082 3 C -0.192 4.192 4 C -0.075 4.075 5 C -0.171 4.171 6 C -0.179 4.179 7 C -0.218 4.218 8 H 0.160 0.840 9 C 0.327 3.673 10 O -0.473 6.473 11 N -0.330 5.330 12 C 0.146 3.854 13 C -0.558 4.558 14 H 0.068 0.932 15 C -0.192 4.192 16 N -0.572 5.572 17 Si 0.785 3.215 18 H -0.194 1.194 19 H -0.195 1.195 20 H -0.209 1.209 21 C 0.022 3.978 22 C -0.194 4.194 23 C -0.223 4.223 24 C -0.180 4.180 25 H 0.089 0.911 26 H 0.062 0.938 27 H 0.049 0.951 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.094 0.906 31 H 0.086 0.914 32 H 0.094 0.906 33 H 0.103 0.897 34 H 0.086 0.914 35 H 0.150 0.850 36 H 0.092 0.908 37 H 0.013 0.987 38 H 0.034 0.966 39 H 0.074 0.926 40 H 0.123 0.877 41 H 0.090 0.910 42 H 0.097 0.903 43 H 0.107 0.893 44 H 0.099 0.901 45 H 0.125 0.875 46 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 8.384 10.590 15.019 20.199 hybrid contribution -0.339 -1.606 -1.282 2.083 sum 8.045 8.984 13.737 18.280 Atomic orbital electron populations 1.21882 0.96180 1.00756 1.01376 1.20629 0.94935 0.96982 0.95649 1.21834 1.01531 0.93726 1.02066 1.21670 1.00331 0.87276 0.98210 1.21528 1.02813 0.99480 0.93291 1.23259 0.90584 1.01407 1.02657 1.22559 0.97958 1.01818 0.99451 0.84023 1.20065 0.80804 0.77424 0.89001 1.90621 1.73053 1.62567 1.21089 1.48070 1.26643 1.50557 1.07701 1.18654 0.88443 0.92021 0.86285 1.21617 1.11607 1.00282 1.22340 0.93207 1.25777 0.95160 1.02481 0.95760 1.70054 1.19878 1.38978 1.28278 0.85478 0.78515 0.79679 0.77818 1.19395 1.19481 1.20914 1.21252 0.99773 0.96835 0.79902 1.22588 1.00932 0.97850 0.98015 1.22923 0.98224 0.96054 1.05132 1.23057 1.02509 1.02336 0.90106 0.91147 0.93770 0.95097 0.93630 0.93221 0.90627 0.91391 0.90597 0.89739 0.91369 0.85033 0.90832 0.98729 0.96597 0.92639 0.87724 0.90999 0.90334 0.89258 0.90130 0.87547 0.86547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.66 8.71 71.98 0.63 -4.04 16 2 C -0.06 -1.84 2.24 -10.80 -0.02 -1.86 16 3 C -0.13 -2.78 7.88 71.98 0.57 -2.21 16 4 C -0.07 -1.84 1.94 -52.18 -0.10 -1.94 16 5 C -0.11 -1.80 9.49 71.98 0.68 -1.12 16 6 C -0.14 -3.80 9.34 30.60 0.29 -3.51 16 7 C -0.20 -5.93 5.03 -11.54 -0.06 -5.99 16 8 H 0.14 3.48 6.17 -2.39 -0.01 3.46 16 9 C 0.54 22.99 4.74 87.65 0.42 23.41 16 10 O -0.59 -31.08 13.28 -3.02 -0.04 -31.12 16 11 N -0.60 -26.30 2.46 -826.17 -2.03 -28.33 16 12 C 0.27 14.84 5.20 85.63 0.45 15.29 16 13 C -0.52 -30.61 9.39 25.60 0.24 -30.37 16 14 H 0.05 2.95 7.81 -2.91 -0.02 2.93 16 15 C 0.01 0.38 5.46 84.65 0.46 0.84 16 16 N -0.93 -57.77 13.29 21.45 0.28 -57.48 16 17 Si 0.96 46.49 29.54 68.60 2.03 48.52 16 18 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 19 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 20 H -0.28 -13.62 7.11 99.48 0.71 -12.91 16 21 C 0.15 4.73 5.36 86.38 0.46 5.19 16 22 C -0.17 -5.42 5.93 -10.80 -0.06 -5.48 16 23 C -0.19 -5.55 10.18 30.59 0.31 -5.24 16 24 C -0.14 -3.10 10.25 30.59 0.31 -2.79 16 25 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 26 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.03 1.23 4.66 -2.39 -0.01 1.22 16 28 H 0.05 1.70 6.79 -2.38 -0.02 1.68 16 29 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.07 1.26 7.04 -2.39 -0.02 1.24 16 31 H 0.07 1.22 7.99 -2.39 -0.02 1.20 16 32 H 0.08 0.95 7.90 -2.38 -0.02 0.93 16 33 H 0.08 1.12 5.69 -2.39 -0.01 1.10 16 34 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.13 2.54 8.05 -2.38 -0.02 2.52 16 36 H 0.07 2.43 7.76 -2.39 -0.02 2.41 16 37 H -0.01 -0.35 7.42 -2.38 -0.02 -0.36 16 38 H 0.02 0.91 7.89 -2.39 -0.02 0.89 16 39 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 40 H 0.10 2.63 6.20 -2.39 -0.01 2.61 16 41 H 0.07 2.35 7.63 -2.39 -0.02 2.33 16 42 H 0.08 2.85 8.14 -2.38 -0.02 2.83 16 43 H 0.09 2.70 8.03 -2.39 -0.02 2.69 16 44 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 45 H 0.11 1.97 8.14 -2.39 -0.02 1.96 16 46 H 0.12 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -74.64 361.49 5.74 -68.90 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: 0.94 Total: 19.35 kcal Atomic # 6 Polarization: -24.40 SS G_CDS: 4.57 Total: -19.83 kcal Atomic # 7 Polarization: -84.07 SS G_CDS: -1.74 Total: -85.82 kcal Atomic # 8 Polarization: -31.08 SS G_CDS: -0.04 Total: -31.12 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.52 kcal Total: -74.64 5.74 -68.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186199233.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.796 kcal (2) G-P(sol) polarization free energy of solvation -74.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds