Wall clock time and date at job start Tue Mar 31 2020 01:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47264 * 2 1 4 4 C 1.53002 * 109.47383 * 120.00418 * 2 1 3 5 5 C 1.52996 * 115.55816 * 325.68735 * 4 2 1 6 6 C 1.52996 * 117.49788 * 111.37409 * 4 2 1 7 7 C 1.53000 * 117.49785 * 179.97438 * 4 2 1 8 8 H 1.08994 * 117.51824 * 359.97438 * 7 4 2 9 9 C 1.50699 * 117.49424 * 145.02107 * 7 4 2 10 10 O 1.21283 * 120.00267 * 0.02562 * 9 7 4 11 11 N 1.34780 * 119.99722 * 180.02562 * 9 7 4 12 12 C 1.46506 * 119.99848 * 180.02562 * 11 9 7 13 13 C 1.50704 * 109.46835 * 270.00022 * 12 11 9 14 14 H 1.08001 * 119.99793 * 359.97438 * 13 12 11 15 15 C 1.37877 * 119.99943 * 180.02562 * 13 12 11 16 16 N 1.31517 * 119.99771 * 359.97438 * 15 13 12 17 17 Si 1.86793 * 120.00044 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47363 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.47235 * 120.00033 * 17 15 13 20 20 H 1.48504 * 109.47181 * 239.99537 * 17 15 13 21 21 C 1.46495 * 120.00190 * 359.97438 * 11 9 7 22 22 C 1.52996 * 109.47343 * 89.99786 * 21 11 9 23 23 C 1.53002 * 117.49888 * 116.25574 * 22 21 11 24 24 C 1.53000 * 117.50107 * 184.91336 * 22 21 11 25 25 H 1.08998 * 109.46981 * 300.00184 * 1 2 3 26 26 H 1.09000 * 109.46740 * 59.99817 * 1 2 3 27 27 H 1.08994 * 109.46849 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.46932 * 240.00391 * 2 1 3 29 29 H 1.09001 * 109.46771 * 59.99928 * 3 2 1 30 30 H 1.09002 * 109.46977 * 180.02562 * 3 2 1 31 31 H 1.08995 * 109.47023 * 300.00095 * 3 2 1 32 32 H 1.09004 * 109.47164 * 274.30959 * 5 4 2 33 33 H 1.09008 * 109.47387 * 34.31132 * 5 4 2 34 34 H 1.09006 * 109.47204 * 154.31190 * 5 4 2 35 35 H 1.09002 * 117.50383 * 0.02562 * 6 4 2 36 36 H 1.09002 * 117.51335 * 214.96833 * 6 4 2 37 37 H 1.08997 * 109.47257 * 29.99742 * 12 11 9 38 38 H 1.08997 * 109.47145 * 150.00052 * 12 11 9 39 39 H 0.97000 * 119.99567 * 180.02562 * 16 15 13 40 40 H 1.09002 * 109.47043 * 329.99683 * 21 11 9 41 41 H 1.09004 * 109.47109 * 210.00237 * 21 11 9 42 42 H 1.09002 * 115.54951 * 330.58548 * 22 21 11 43 43 H 1.09000 * 117.49996 * 215.00804 * 23 22 21 44 44 H 1.08999 * 117.49664 * 0.02562 * 23 22 21 45 45 H 1.09008 * 117.49673 * 359.97438 * 24 22 21 46 46 H 1.08999 * 117.49959 * 144.99502 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.1853 -0.5488 2.5063 6 6 2.7419 -2.0663 1.0512 7 6 3.5551 -0.8287 1.4338 8 1 4.1887 -0.3859 0.6654 9 6 4.0914 -0.7559 2.8403 10 8 3.3293 -0.6177 3.7736 11 7 5.4181 -0.8445 3.0610 12 6 5.9395 -0.7744 4.4283 13 6 6.2317 0.6613 4.7814 14 1 6.0479 1.4431 4.0593 15 6 6.7348 0.9765 6.0258 16 7 6.9591 0.0243 6.9048 17 14 7.0977 2.7558 6.4632 18 1 6.7605 3.6279 5.3095 19 1 6.2815 3.1531 7.6385 20 1 8.5391 2.9013 6.7898 21 6 6.3386 -1.0121 1.9337 22 6 6.7745 0.3625 1.4225 23 6 8.2572 0.7217 1.5383 24 6 7.6508 0.4048 0.1690 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.6767 1.9563 0.8900 30 1 3.1301 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.4778 0.3660 3.0218 33 1 0.1339 -0.4872 2.2252 34 1 1.3352 -1.4023 3.1676 35 1 2.8407 -2.4372 0.0309 36 1 2.5950 -2.8284 1.8165 37 1 5.1991 -1.1752 5.1205 38 1 6.8564 -1.3596 4.4980 39 1 7.3127 0.2461 7.7804 40 1 5.8371 -1.5553 1.1328 41 1 7.2145 -1.5729 2.2601 42 1 6.0500 1.1657 1.5575 43 1 8.5083 1.7612 1.7495 44 1 8.9222 -0.0215 1.9783 45 1 7.9171 -0.5468 -0.2912 46 1 7.5028 1.2358 -0.5207 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186199257.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:31 Heat of formation + Delta-G solvation = -14.887679 kcal Electronic energy + Delta-G solvation = -23156.349618 eV Core-core repulsion = 20046.607315 eV Total energy + Delta-G solvation = -3109.742304 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.35392 -39.13531 -38.12378 -36.01534 -34.63550 -34.15769 -30.16611 -29.42772 -27.73724 -27.51777 -25.99255 -23.62068 -23.32426 -23.11381 -21.75340 -20.03337 -19.14383 -18.61155 -17.98783 -17.14553 -16.44227 -16.31614 -15.94950 -15.74628 -15.20562 -14.79248 -14.53379 -14.33591 -14.14142 -13.77787 -13.62695 -13.50086 -13.30928 -13.25091 -13.19005 -12.95542 -12.69874 -12.54148 -12.36641 -12.25778 -12.19228 -12.03266 -11.96046 -11.62126 -11.39771 -11.21659 -10.95010 -10.75943 -10.66524 -10.54722 -10.21852 -9.39925 -8.21013 -6.32774 1.31881 1.34281 1.45493 1.73751 2.30037 2.42502 2.88326 3.03747 3.08614 3.56297 3.75063 3.88630 3.91855 4.04240 4.08669 4.18895 4.28166 4.39389 4.48118 4.50817 4.62721 4.64661 4.82274 4.84764 4.87895 4.88246 4.90738 4.97616 5.03320 5.06970 5.10952 5.12354 5.12976 5.22114 5.24639 5.28396 5.34451 5.37206 5.49428 5.50610 5.60992 5.68458 5.90043 6.09817 6.73684 6.85214 7.31736 7.56485 8.86567 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.015524 B = 0.005715 C = 0.005016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.256799 B = 4898.361342 C = 5580.296672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.050 4.050 3 C -0.146 4.146 4 C -0.088 4.088 5 C -0.099 4.099 6 C -0.129 4.129 7 C -0.188 4.188 8 H 0.140 0.860 9 C 0.524 3.476 10 O -0.587 6.587 11 N -0.599 5.599 12 C 0.265 3.735 13 C -0.519 4.519 14 H 0.050 0.950 15 C 0.007 3.993 16 N -0.931 5.931 17 Si 0.960 3.040 18 H -0.270 1.270 19 H -0.283 1.283 20 H -0.269 1.269 21 C 0.146 3.854 22 C -0.174 4.174 23 C -0.187 4.187 24 C -0.143 4.143 25 H 0.049 0.951 26 H 0.070 0.930 27 H 0.063 0.937 28 H 0.094 0.906 29 H 0.035 0.965 30 H 0.048 0.952 31 H 0.073 0.927 32 H 0.031 0.969 33 H 0.075 0.925 34 H 0.035 0.965 35 H 0.139 0.861 36 H 0.081 0.919 37 H -0.005 1.005 38 H 0.018 0.982 39 H 0.265 0.735 40 H 0.106 0.894 41 H 0.072 0.928 42 H 0.078 0.922 43 H 0.080 0.920 44 H 0.089 0.911 45 H 0.116 0.884 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.807 -1.785 -20.439 21.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.069 4.069 3 C -0.203 4.203 4 C -0.089 4.089 5 C -0.156 4.156 6 C -0.166 4.166 7 C -0.209 4.209 8 H 0.157 0.843 9 C 0.313 3.687 10 O -0.468 6.468 11 N -0.329 5.329 12 C 0.143 3.857 13 C -0.558 4.558 14 H 0.068 0.932 15 C -0.191 4.191 16 N -0.572 5.572 17 Si 0.785 3.215 18 H -0.194 1.194 19 H -0.209 1.209 20 H -0.195 1.195 21 C 0.024 3.976 22 C -0.193 4.193 23 C -0.224 4.224 24 C -0.180 4.180 25 H 0.068 0.932 26 H 0.089 0.911 27 H 0.082 0.918 28 H 0.113 0.887 29 H 0.054 0.946 30 H 0.067 0.933 31 H 0.092 0.908 32 H 0.050 0.950 33 H 0.094 0.906 34 H 0.054 0.946 35 H 0.157 0.843 36 H 0.100 0.900 37 H 0.013 0.987 38 H 0.036 0.964 39 H 0.074 0.926 40 H 0.124 0.876 41 H 0.090 0.910 42 H 0.096 0.904 43 H 0.099 0.901 44 H 0.107 0.893 45 H 0.135 0.865 46 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -6.106 -1.757 -19.759 20.755 hybrid contribution 0.623 1.014 1.546 1.952 sum -5.483 -0.743 -18.212 19.034 Atomic orbital electron populations 1.21886 0.93964 1.02354 1.02004 1.20695 0.96532 0.95248 0.94399 1.21826 1.00809 0.96172 1.01522 1.21660 0.90122 0.99514 0.97599 1.21303 0.98792 1.00800 0.94726 1.23278 0.99880 0.89639 1.03837 1.22334 0.96519 1.08007 0.94041 0.84282 1.20419 0.81834 0.75604 0.90795 1.90637 1.57552 1.51552 1.47033 1.48138 1.06049 1.70354 1.08353 1.18695 0.92373 0.95965 0.78654 1.21601 1.41668 0.93409 0.99084 0.93222 1.25771 0.95624 1.01637 0.96105 1.70058 1.46294 1.34033 1.06796 0.85483 0.78150 0.79889 0.78007 1.19427 1.20899 1.19458 1.21232 0.93301 0.95031 0.88071 1.22580 0.94354 0.98628 1.03773 1.22937 0.95804 1.01884 1.01757 1.23068 1.01090 1.04278 0.89545 0.93182 0.91117 0.91843 0.88746 0.94624 0.93331 0.90758 0.95007 0.90609 0.94553 0.84260 0.90009 0.98726 0.96417 0.92630 0.87627 0.90991 0.90366 0.90148 0.89254 0.86548 0.87556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 8.20 71.98 0.59 -1.82 16 2 C -0.05 -0.97 2.98 -10.79 -0.03 -1.00 16 3 C -0.15 -3.06 9.03 71.98 0.65 -2.41 16 4 C -0.09 -2.32 1.91 -52.18 -0.10 -2.42 16 5 C -0.10 -3.22 7.73 71.98 0.56 -2.67 16 6 C -0.13 -3.02 9.52 30.58 0.29 -2.73 16 7 C -0.19 -5.60 4.00 -11.55 -0.05 -5.65 16 8 H 0.14 3.52 6.48 -2.39 -0.02 3.50 16 9 C 0.52 22.62 7.44 87.66 0.65 23.27 16 10 O -0.59 -30.92 12.69 -3.04 -0.04 -30.96 16 11 N -0.60 -26.33 2.46 -826.15 -2.03 -28.36 16 12 C 0.26 14.69 5.20 85.63 0.45 15.14 16 13 C -0.52 -30.52 9.39 25.60 0.24 -30.28 16 14 H 0.05 2.94 7.81 -2.91 -0.02 2.92 16 15 C 0.01 0.40 5.46 84.65 0.46 0.86 16 16 N -0.93 -57.67 13.29 21.45 0.28 -57.39 16 17 Si 0.96 46.44 29.54 68.60 2.03 48.47 16 18 H -0.27 -12.74 7.11 99.48 0.71 -12.04 16 19 H -0.28 -13.60 7.11 99.48 0.71 -12.89 16 20 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 21 C 0.15 4.75 5.36 86.38 0.46 5.21 16 22 C -0.17 -5.37 5.72 -10.79 -0.06 -5.43 16 23 C -0.19 -5.55 10.18 30.62 0.31 -5.24 16 24 C -0.14 -3.08 10.25 30.62 0.31 -2.76 16 25 H 0.05 0.96 6.45 -2.39 -0.02 0.94 16 26 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.09 1.39 7.90 -2.38 -0.02 1.37 16 29 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.05 1.08 7.29 -2.39 -0.02 1.06 16 31 H 0.07 1.20 8.14 -2.39 -0.02 1.19 16 32 H 0.03 1.24 7.26 -2.38 -0.02 1.22 16 33 H 0.08 1.98 5.59 -2.38 -0.01 1.97 16 34 H 0.04 1.34 7.02 -2.38 -0.02 1.32 16 35 H 0.14 2.13 8.05 -2.39 -0.02 2.11 16 36 H 0.08 2.19 8.05 -2.39 -0.02 2.17 16 37 H -0.01 -0.34 7.42 -2.39 -0.02 -0.36 16 38 H 0.02 1.01 7.89 -2.39 -0.02 0.99 16 39 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 40 H 0.11 2.63 6.64 -2.39 -0.02 2.61 16 41 H 0.07 2.34 7.63 -2.38 -0.02 2.32 16 42 H 0.08 2.81 8.14 -2.39 -0.02 2.79 16 43 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 44 H 0.09 2.70 8.03 -2.39 -0.02 2.68 16 45 H 0.12 1.96 8.14 -2.38 -0.02 1.94 16 46 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -74.13 364.63 5.91 -68.22 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: 0.93 Total: 17.94 kcal Atomic # 6 Polarization: -22.66 SS G_CDS: 4.74 Total: -17.92 kcal Atomic # 7 Polarization: -84.01 SS G_CDS: -1.74 Total: -85.75 kcal Atomic # 8 Polarization: -30.92 SS G_CDS: -0.04 Total: -30.96 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.47 kcal Total: -74.13 5.91 -68.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186199257.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.331 kcal (2) G-P(sol) polarization free energy of solvation -74.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds