Wall clock time and date at job start Tue Mar 31 2020 01:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.46838 * 2 1 4 4 C 1.53000 * 109.47267 * 119.99553 * 2 1 3 5 5 C 1.53002 * 115.55710 * 34.31649 * 4 2 1 6 6 C 1.52997 * 117.50377 * 248.62126 * 4 2 1 7 7 C 1.52993 * 60.00306 * 252.51046 * 6 4 2 8 8 H 1.09006 * 117.49352 * 107.50990 * 7 6 4 9 9 C 1.50696 * 117.50042 * 252.50632 * 7 6 4 10 10 O 1.21289 * 119.99762 * 68.61179 * 9 7 6 11 11 N 1.34774 * 120.00038 * 248.60968 * 9 7 6 12 12 C 1.46506 * 119.99868 * 180.02562 * 11 9 7 13 13 C 1.50703 * 109.47289 * 89.99907 * 12 11 9 14 14 H 1.07994 * 119.99399 * 0.02562 * 13 12 11 15 15 C 1.37874 * 119.99789 * 179.97438 * 13 12 11 16 16 N 1.31518 * 120.00144 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99733 * 179.97438 * 15 13 12 18 18 H 1.48490 * 109.47181 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.46716 * 120.00463 * 17 15 13 20 20 H 1.48500 * 109.46999 * 240.00161 * 17 15 13 21 21 C 1.46498 * 120.00377 * 0.02562 * 11 9 7 22 22 C 1.53001 * 109.47206 * 270.00089 * 21 11 9 23 23 C 1.52997 * 117.49994 * 243.74565 * 22 21 11 24 24 C 1.52995 * 117.50036 * 175.08312 * 22 21 11 25 25 H 1.08993 * 109.47022 * 299.99826 * 1 2 3 26 26 H 1.08993 * 109.46999 * 60.00126 * 1 2 3 27 27 H 1.08999 * 109.46600 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47623 * 240.00460 * 2 1 3 29 29 H 1.09002 * 109.47004 * 60.00222 * 3 2 1 30 30 H 1.09007 * 109.46723 * 180.02562 * 3 2 1 31 31 H 1.08993 * 109.47222 * 299.99737 * 3 2 1 32 32 H 1.09010 * 109.46850 * 205.68279 * 5 4 2 33 33 H 1.08994 * 109.47582 * 325.68763 * 5 4 2 34 34 H 1.09006 * 109.47195 * 85.69077 * 5 4 2 35 35 H 1.09001 * 117.49805 * 145.01830 * 6 4 2 36 36 H 1.09000 * 117.49688 * 0.02562 * 6 4 2 37 37 H 1.09001 * 109.47060 * 210.00357 * 12 11 9 38 38 H 1.09004 * 109.47073 * 329.99846 * 12 11 9 39 39 H 0.96997 * 119.99752 * 179.97438 * 16 15 13 40 40 H 1.08997 * 109.46694 * 29.99578 * 21 11 9 41 41 H 1.08995 * 109.47258 * 149.99854 * 21 11 9 42 42 H 1.09007 * 115.55105 * 29.41222 * 22 21 11 43 43 H 1.09000 * 117.49839 * 359.97438 * 23 22 21 44 44 H 1.08996 * 117.50104 * 145.01949 * 23 22 21 45 45 H 1.09002 * 117.50047 * 214.98354 * 24 22 21 46 46 H 1.09003 * 117.50043 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.1852 -1.8962 1.7284 6 6 2.7420 0.1227 2.3151 7 6 3.5551 -0.8280 1.4344 8 1 4.1887 -0.3843 0.6663 9 6 4.0912 -2.0824 2.0746 10 8 3.3288 -2.9597 2.4215 11 7 5.4178 -2.2295 2.2616 12 6 5.9390 -3.4494 2.8835 13 6 6.2312 -4.4721 1.8160 14 1 6.0475 -4.2368 0.7781 15 6 6.7341 -5.7077 2.1643 16 7 6.9583 -5.9940 3.4283 17 14 7.0957 -6.9758 0.8411 18 1 6.7589 -6.4115 -0.4904 19 1 8.5369 -7.3317 0.8774 20 1 6.2792 -8.1920 1.0848 21 6 6.3386 -1.1698 1.8431 22 6 6.7744 -1.4145 0.3970 23 6 8.2570 -1.6948 0.1439 24 6 7.6509 -0.3504 -0.2664 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3632 -1.0277 -0.0005 28 1 1.8934 -0.5137 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 3.1300 1.4426 -0.0005 31 1 1.6767 1.9564 -0.8899 32 1 1.3352 -2.0422 2.7982 33 1 0.1340 -1.6836 1.5345 34 1 1.4778 -2.8001 1.1938 35 1 2.5947 -0.1592 3.3577 36 1 2.8401 1.1918 2.1265 37 1 6.8559 -3.2176 3.4255 38 1 5.1984 -3.8489 3.5765 39 1 7.3117 -6.8634 3.6733 40 1 5.8373 -0.2045 1.9130 41 1 7.2144 -1.1722 2.4919 42 1 6.0498 -1.9329 -0.2311 43 1 8.9220 -1.7044 1.0074 44 1 8.5079 -2.3972 -0.6510 45 1 7.5032 -0.1688 -1.3310 46 1 7.9167 0.5244 0.3272 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186199277.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:37 Heat of formation + Delta-G solvation = 4.651051 kcal Electronic energy + Delta-G solvation = -23085.607225 eV Core-core repulsion = 19976.712184 eV Total energy + Delta-G solvation = -3108.895041 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -40.01458 -37.93111 -36.80209 -34.28700 -32.99533 -32.41199 -29.13158 -27.99508 -26.46709 -25.81651 -24.06315 -22.91781 -22.01603 -21.70297 -20.45163 -18.54808 -17.84462 -16.68433 -16.42525 -15.66198 -15.16015 -14.73548 -14.53923 -14.25126 -14.17665 -13.46049 -13.33677 -12.88319 -12.75660 -12.40214 -12.25666 -12.19544 -12.08727 -11.52163 -11.46126 -11.36952 -11.31688 -11.19250 -11.18052 -10.93952 -10.82065 -10.61876 -10.55618 -10.24481 -9.91637 -9.80474 -9.56005 -9.48383 -9.36187 -8.59015 -8.37984 -7.59600 -5.98782 -4.01397 3.23395 3.31841 3.39658 3.43825 3.90062 4.10722 4.23921 4.49027 4.73395 4.83579 4.99784 5.07404 5.09878 5.18114 5.26306 5.30251 5.36077 5.42280 5.57303 5.60037 5.63224 5.74056 5.80251 5.86496 5.87165 5.87706 5.95064 6.03395 6.07676 6.10996 6.19003 6.26917 6.28215 6.29392 6.38971 6.44109 6.50182 6.65378 6.90446 7.13566 7.49486 7.63498 7.98585 8.30622 8.50857 8.98207 9.20390 9.62892 11.09679 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.016369 B = 0.005543 C = 0.004755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.158148 B = 5049.837699 C = 5886.895040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.060 4.060 3 C -0.150 4.150 4 C -0.088 4.088 5 C -0.106 4.106 6 C -0.157 4.157 7 C -0.180 4.180 8 H 0.117 0.883 9 C 0.535 3.465 10 O -0.535 6.535 11 N -0.593 5.593 12 C 0.247 3.753 13 C -0.512 4.512 14 H 0.058 0.942 15 C 0.059 3.941 16 N -0.898 5.898 17 Si 0.894 3.106 18 H -0.274 1.274 19 H -0.285 1.285 20 H -0.284 1.284 21 C 0.148 3.852 22 C -0.153 4.153 23 C -0.164 4.164 24 C -0.191 4.191 25 H 0.055 0.945 26 H 0.050 0.950 27 H 0.062 0.938 28 H 0.072 0.928 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.063 0.937 33 H 0.049 0.951 34 H 0.068 0.932 35 H 0.094 0.906 36 H 0.102 0.898 37 H 0.029 0.971 38 H 0.042 0.958 39 H 0.261 0.739 40 H 0.069 0.931 41 H 0.073 0.927 42 H 0.102 0.898 43 H 0.094 0.906 44 H 0.089 0.911 45 H 0.087 0.913 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.806 16.076 -6.175 18.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.078 4.078 3 C -0.207 4.207 4 C -0.089 4.089 5 C -0.163 4.163 6 C -0.194 4.194 7 C -0.202 4.202 8 H 0.134 0.866 9 C 0.322 3.678 10 O -0.413 6.413 11 N -0.324 5.324 12 C 0.128 3.872 13 C -0.551 4.551 14 H 0.076 0.924 15 C -0.142 4.142 16 N -0.537 5.537 17 Si 0.722 3.278 18 H -0.199 1.199 19 H -0.211 1.211 20 H -0.210 1.210 21 C 0.023 3.977 22 C -0.173 4.173 23 C -0.201 4.201 24 C -0.229 4.229 25 H 0.074 0.926 26 H 0.069 0.931 27 H 0.081 0.919 28 H 0.091 0.909 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.068 0.932 34 H 0.087 0.913 35 H 0.112 0.888 36 H 0.120 0.880 37 H 0.047 0.953 38 H 0.060 0.940 39 H 0.071 0.929 40 H 0.087 0.913 41 H 0.092 0.908 42 H 0.121 0.879 43 H 0.112 0.888 44 H 0.107 0.893 45 H 0.105 0.895 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -6.125 15.435 -5.838 17.602 hybrid contribution 0.641 -0.846 -0.835 1.351 sum -5.484 14.589 -6.673 16.954 Atomic orbital electron populations 1.21884 0.94985 1.02082 1.01255 1.20594 0.95718 0.95222 0.96297 1.21975 1.01128 0.96043 1.01528 1.21525 0.91742 0.98934 0.96675 1.21438 0.96665 0.95991 1.02189 1.23246 1.02810 0.96785 0.96575 1.22491 0.95205 0.98582 1.03873 0.86555 1.19429 0.82507 0.86773 0.79116 1.90661 1.56386 1.43071 1.51165 1.48144 1.04788 1.19875 1.59544 1.19273 0.94393 0.79970 0.93528 1.21432 1.41848 0.98189 0.93585 0.92416 1.24910 0.95829 0.98093 0.95352 1.69943 1.45590 1.22444 1.15767 0.86509 0.77683 0.81601 0.82032 1.19904 1.21088 1.21010 1.20970 0.93855 0.90233 0.92622 1.22760 0.94580 1.02136 0.97797 1.22882 0.96303 0.97643 1.03231 1.22973 1.06167 0.93262 1.00469 0.92594 0.93082 0.91942 0.90930 0.92262 0.92515 0.92881 0.91784 0.93221 0.91349 0.88752 0.87958 0.95297 0.94009 0.92945 0.91274 0.90813 0.87940 0.88794 0.89267 0.89458 0.89213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 8.20 37.16 0.30 -1.13 16 2 C -0.06 -0.67 3.15 -90.62 -0.29 -0.96 16 3 C -0.15 -1.40 7.79 37.16 0.29 -1.11 16 4 C -0.09 -1.23 2.47 -154.51 -0.38 -1.61 16 5 C -0.11 -1.67 7.73 37.16 0.29 -1.38 16 6 C -0.16 -2.05 8.92 -26.74 -0.24 -2.29 16 7 C -0.18 -2.81 4.17 -91.78 -0.38 -3.19 16 8 H 0.12 1.65 6.48 -51.93 -0.34 1.31 16 9 C 0.53 11.18 7.44 -10.99 -0.08 11.10 16 10 O -0.54 -13.20 12.68 5.55 0.07 -13.13 16 11 N -0.59 -12.61 2.46 -175.06 -0.43 -13.04 16 12 C 0.25 6.48 5.20 -5.19 -0.03 6.46 16 13 C -0.51 -14.43 9.39 -34.44 -0.32 -14.75 16 14 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 15 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 16 N -0.90 -26.88 13.29 55.43 0.74 -26.14 16 17 Si 0.89 22.16 29.54 -169.99 -5.02 17.14 16 18 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.28 -7.07 7.11 56.52 0.40 -6.66 16 21 C 0.15 2.46 5.37 -4.04 -0.02 2.44 16 22 C -0.15 -2.46 5.72 -90.62 -0.52 -2.98 16 23 C -0.16 -2.51 10.18 -26.69 -0.27 -2.79 16 24 C -0.19 -2.41 10.25 -26.70 -0.27 -2.68 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.65 6.45 -51.93 -0.33 0.31 16 28 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.06 0.52 6.98 -51.93 -0.36 0.16 16 30 H 0.06 0.53 7.08 -51.92 -0.37 0.17 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.06 1.12 7.01 -51.92 -0.36 0.76 16 33 H 0.05 0.65 5.59 -51.93 -0.29 0.36 16 34 H 0.07 1.26 7.26 -51.93 -0.38 0.88 16 35 H 0.09 1.33 8.05 -51.93 -0.42 0.91 16 36 H 0.10 1.08 5.85 -51.93 -0.30 0.78 16 37 H 0.03 0.77 7.89 -51.93 -0.41 0.36 16 38 H 0.04 1.24 7.42 -51.93 -0.39 0.85 16 39 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 40 H 0.07 0.96 6.64 -51.93 -0.34 0.62 16 41 H 0.07 1.22 7.63 -51.93 -0.40 0.82 16 42 H 0.10 1.85 8.14 -51.93 -0.42 1.43 16 43 H 0.09 1.44 8.03 -51.93 -0.42 1.02 16 44 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 45 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 46 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 360.32 15.07 5.43 5.43 Total: -1.00 -31.52 360.32 -9.27 -40.78 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -8.03 Total: 2.23 kcal Atomic # 6 Polarization: -11.26 SS G_CDS: -2.02 Total: -13.28 kcal Atomic # 7 Polarization: -39.49 SS G_CDS: 0.31 Total: -39.18 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: 0.07 Total: -13.13 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.52 -9.27 -40.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186199277.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.435 kcal (2) G-P(sol) polarization free energy of solvation -31.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds