Wall clock time and date at job start Tue Mar 31 2020 01:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.46838 * 2 1 4 4 C 1.53000 * 109.47267 * 119.99553 * 2 1 3 5 5 C 1.53002 * 115.55710 * 34.31649 * 4 2 1 6 6 C 1.52997 * 117.50377 * 248.62126 * 4 2 1 7 7 C 1.52993 * 60.00306 * 252.51046 * 6 4 2 8 8 H 1.09006 * 117.49352 * 107.50990 * 7 6 4 9 9 C 1.50696 * 117.50042 * 252.50632 * 7 6 4 10 10 O 1.21289 * 119.99762 * 68.61179 * 9 7 6 11 11 N 1.34774 * 120.00038 * 248.60968 * 9 7 6 12 12 C 1.46506 * 119.99868 * 180.02562 * 11 9 7 13 13 C 1.50703 * 109.47289 * 89.99907 * 12 11 9 14 14 H 1.07994 * 119.99399 * 0.02562 * 13 12 11 15 15 C 1.37874 * 119.99789 * 179.97438 * 13 12 11 16 16 N 1.31518 * 120.00144 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99733 * 179.97438 * 15 13 12 18 18 H 1.48490 * 109.47181 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.46716 * 120.00463 * 17 15 13 20 20 H 1.48500 * 109.46999 * 240.00161 * 17 15 13 21 21 C 1.46498 * 120.00377 * 0.02562 * 11 9 7 22 22 C 1.53001 * 109.47206 * 270.00089 * 21 11 9 23 23 C 1.52997 * 117.49994 * 243.74565 * 22 21 11 24 24 C 1.52995 * 117.50036 * 175.08312 * 22 21 11 25 25 H 1.08993 * 109.47022 * 299.99826 * 1 2 3 26 26 H 1.08993 * 109.46999 * 60.00126 * 1 2 3 27 27 H 1.08999 * 109.46600 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47623 * 240.00460 * 2 1 3 29 29 H 1.09002 * 109.47004 * 60.00222 * 3 2 1 30 30 H 1.09007 * 109.46723 * 180.02562 * 3 2 1 31 31 H 1.08993 * 109.47222 * 299.99737 * 3 2 1 32 32 H 1.09010 * 109.46850 * 205.68279 * 5 4 2 33 33 H 1.08994 * 109.47582 * 325.68763 * 5 4 2 34 34 H 1.09006 * 109.47195 * 85.69077 * 5 4 2 35 35 H 1.09001 * 117.49805 * 145.01830 * 6 4 2 36 36 H 1.09000 * 117.49688 * 0.02562 * 6 4 2 37 37 H 1.09001 * 109.47060 * 210.00357 * 12 11 9 38 38 H 1.09004 * 109.47073 * 329.99846 * 12 11 9 39 39 H 0.96997 * 119.99752 * 179.97438 * 16 15 13 40 40 H 1.08997 * 109.46694 * 29.99578 * 21 11 9 41 41 H 1.08995 * 109.47258 * 149.99854 * 21 11 9 42 42 H 1.09007 * 115.55105 * 29.41222 * 22 21 11 43 43 H 1.09000 * 117.49839 * 359.97438 * 23 22 21 44 44 H 1.08996 * 117.50104 * 145.01949 * 23 22 21 45 45 H 1.09002 * 117.50047 * 214.98354 * 24 22 21 46 46 H 1.09003 * 117.50043 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.1852 -1.8962 1.7284 6 6 2.7420 0.1227 2.3151 7 6 3.5551 -0.8280 1.4344 8 1 4.1887 -0.3843 0.6663 9 6 4.0912 -2.0824 2.0746 10 8 3.3288 -2.9597 2.4215 11 7 5.4178 -2.2295 2.2616 12 6 5.9390 -3.4494 2.8835 13 6 6.2312 -4.4721 1.8160 14 1 6.0475 -4.2368 0.7781 15 6 6.7341 -5.7077 2.1643 16 7 6.9583 -5.9940 3.4283 17 14 7.0957 -6.9758 0.8411 18 1 6.7589 -6.4115 -0.4904 19 1 8.5369 -7.3317 0.8774 20 1 6.2792 -8.1920 1.0848 21 6 6.3386 -1.1698 1.8431 22 6 6.7744 -1.4145 0.3970 23 6 8.2570 -1.6948 0.1439 24 6 7.6509 -0.3504 -0.2664 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3632 -1.0277 -0.0005 28 1 1.8934 -0.5137 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 3.1300 1.4426 -0.0005 31 1 1.6767 1.9564 -0.8899 32 1 1.3352 -2.0422 2.7982 33 1 0.1340 -1.6836 1.5345 34 1 1.4778 -2.8001 1.1938 35 1 2.5947 -0.1592 3.3577 36 1 2.8401 1.1918 2.1265 37 1 6.8559 -3.2176 3.4255 38 1 5.1984 -3.8489 3.5765 39 1 7.3117 -6.8634 3.6733 40 1 5.8373 -0.2045 1.9130 41 1 7.2144 -1.1722 2.4919 42 1 6.0498 -1.9329 -0.2311 43 1 8.9220 -1.7044 1.0074 44 1 8.5079 -2.3972 -0.6510 45 1 7.5032 -0.1688 -1.3310 46 1 7.9167 0.5244 0.3272 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186199277.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:36 Heat of formation + Delta-G solvation = -12.004459 kcal Electronic energy + Delta-G solvation = -23086.329462 eV Core-core repulsion = 19976.712184 eV Total energy + Delta-G solvation = -3109.617278 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.40796 -39.23791 -38.16015 -36.02577 -34.61530 -33.89365 -30.34844 -29.82443 -27.71061 -27.06752 -25.80785 -23.92045 -23.36660 -23.10819 -21.75092 -19.91696 -19.06698 -18.61996 -18.06797 -17.16845 -16.55020 -16.35344 -15.91793 -15.70431 -15.30171 -14.79389 -14.65990 -14.35083 -14.03664 -13.84089 -13.64891 -13.49385 -13.31081 -13.27829 -12.96246 -12.72309 -12.56332 -12.50322 -12.42845 -12.26168 -12.22079 -12.18797 -11.87780 -11.62295 -11.49259 -11.21730 -10.94653 -10.75412 -10.64551 -10.51618 -10.21726 -9.40272 -8.21009 -6.32867 1.32108 1.34423 1.45712 1.72909 2.29877 2.42294 2.88408 3.03742 3.08611 3.57186 3.74943 3.91254 3.92348 4.01439 4.08589 4.18758 4.27571 4.32198 4.48940 4.50532 4.64405 4.71067 4.78213 4.83309 4.87554 4.88253 4.95153 4.98622 5.01785 5.07646 5.11794 5.12312 5.14848 5.23922 5.26649 5.29193 5.34378 5.37057 5.51487 5.55476 5.60256 5.64958 5.89812 6.09726 6.73539 6.84708 7.31616 7.55822 8.86581 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.016369 B = 0.005543 C = 0.004755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.158148 B = 5049.837699 C = 5886.895040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.057 4.057 3 C -0.147 4.147 4 C -0.089 4.089 5 C -0.101 4.101 6 C -0.132 4.132 7 C -0.189 4.189 8 H 0.140 0.860 9 C 0.523 3.477 10 O -0.587 6.587 11 N -0.599 5.599 12 C 0.264 3.736 13 C -0.519 4.519 14 H 0.050 0.950 15 C 0.007 3.993 16 N -0.931 5.931 17 Si 0.960 3.040 18 H -0.270 1.270 19 H -0.269 1.269 20 H -0.283 1.283 21 C 0.146 3.854 22 C -0.174 4.174 23 C -0.186 4.186 24 C -0.142 4.142 25 H 0.062 0.938 26 H 0.069 0.931 27 H 0.050 0.950 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.036 0.964 33 H 0.076 0.924 34 H 0.031 0.969 35 H 0.080 0.920 36 H 0.143 0.857 37 H 0.018 0.982 38 H -0.005 1.005 39 H 0.265 0.735 40 H 0.106 0.894 41 H 0.072 0.928 42 H 0.078 0.922 43 H 0.089 0.911 44 H 0.080 0.920 45 H 0.106 0.894 46 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.745 19.227 -8.268 21.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.075 4.075 3 C -0.204 4.204 4 C -0.090 4.090 5 C -0.158 4.158 6 C -0.169 4.169 7 C -0.210 4.210 8 H 0.157 0.843 9 C 0.313 3.687 10 O -0.468 6.468 11 N -0.329 5.329 12 C 0.143 3.857 13 C -0.558 4.558 14 H 0.068 0.932 15 C -0.191 4.191 16 N -0.572 5.572 17 Si 0.785 3.215 18 H -0.194 1.194 19 H -0.195 1.195 20 H -0.209 1.209 21 C 0.024 3.976 22 C -0.194 4.194 23 C -0.224 4.224 24 C -0.180 4.180 25 H 0.081 0.919 26 H 0.088 0.912 27 H 0.069 0.931 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.055 0.945 33 H 0.095 0.905 34 H 0.051 0.949 35 H 0.098 0.902 36 H 0.160 0.840 37 H 0.036 0.964 38 H 0.013 0.987 39 H 0.074 0.926 40 H 0.124 0.876 41 H 0.090 0.910 42 H 0.096 0.904 43 H 0.108 0.892 44 H 0.099 0.901 45 H 0.124 0.876 46 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -6.044 18.630 -7.949 21.137 hybrid contribution 0.587 -1.852 -0.139 1.948 sum -5.457 16.778 -8.087 19.409 Atomic orbital electron populations 1.21876 0.93976 1.01760 1.02526 1.20619 0.96563 0.96302 0.94029 1.21966 1.01344 0.94252 1.02847 1.21679 0.90092 0.98627 0.98586 1.21327 0.98853 0.95686 0.99933 1.23372 0.99890 0.98213 0.95387 1.22372 0.96501 0.96843 1.05264 0.84269 1.20436 0.81868 0.88139 0.78296 1.90637 1.57541 1.45360 1.53273 1.48137 1.06025 1.19351 1.59343 1.18700 0.92386 0.82027 0.92591 1.21601 1.41707 0.99075 0.93434 0.93218 1.25774 0.95604 1.00173 0.97575 1.70057 1.46282 1.23170 1.17670 0.85476 0.78146 0.78651 0.79218 1.19428 1.19465 1.20881 1.21233 0.93293 0.90102 0.92993 1.22583 0.94367 1.05202 0.97241 1.22937 0.95787 1.00351 1.03285 1.23068 1.01074 0.92246 1.01582 0.91911 0.91229 0.93096 0.91740 0.91240 0.92179 0.91336 0.94483 0.90521 0.94943 0.90161 0.83974 0.96391 0.98720 0.92622 0.87620 0.90961 0.90395 0.89236 0.90144 0.87566 0.86518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 8.20 71.98 0.59 -1.87 16 2 C -0.06 -1.12 3.15 -10.79 -0.03 -1.15 16 3 C -0.15 -2.07 7.79 71.98 0.56 -1.51 16 4 C -0.09 -2.38 2.47 -52.18 -0.13 -2.51 16 5 C -0.10 -3.30 7.73 71.98 0.56 -2.74 16 6 C -0.13 -3.13 8.92 30.59 0.27 -2.86 16 7 C -0.19 -5.68 4.17 -11.54 -0.05 -5.73 16 8 H 0.14 3.55 6.48 -2.38 -0.02 3.54 16 9 C 0.52 22.70 7.44 87.66 0.65 23.36 16 10 O -0.59 -31.05 12.68 -3.06 -0.04 -31.09 16 11 N -0.60 -26.39 2.46 -826.14 -2.03 -28.42 16 12 C 0.26 14.70 5.20 85.63 0.45 15.15 16 13 C -0.52 -30.58 9.39 25.60 0.24 -30.34 16 14 H 0.05 2.94 7.81 -2.91 -0.02 2.92 16 15 C 0.01 0.41 5.46 84.65 0.46 0.87 16 16 N -0.93 -57.68 13.29 21.45 0.28 -57.39 16 17 Si 0.96 46.44 29.54 68.60 2.03 48.47 16 18 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 19 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 20 H -0.28 -13.58 7.11 99.48 0.71 -12.87 16 21 C 0.15 4.76 5.37 86.38 0.46 5.22 16 22 C -0.17 -5.40 5.72 -10.80 -0.06 -5.46 16 23 C -0.19 -5.55 10.18 30.62 0.31 -5.24 16 24 C -0.14 -3.08 10.25 30.62 0.31 -2.76 16 25 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.05 0.97 6.45 -2.39 -0.02 0.96 16 28 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.07 0.85 6.98 -2.39 -0.02 0.84 16 30 H 0.06 0.82 7.08 -2.38 -0.02 0.81 16 31 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.04 1.37 7.01 -2.38 -0.02 1.35 16 33 H 0.08 2.01 5.59 -2.39 -0.01 2.00 16 34 H 0.03 1.26 7.26 -2.38 -0.02 1.25 16 35 H 0.08 2.18 8.05 -2.39 -0.02 2.16 16 36 H 0.14 2.30 5.85 -2.39 -0.01 2.28 16 37 H 0.02 1.02 7.89 -2.39 -0.02 1.01 16 38 H -0.01 -0.34 7.42 -2.38 -0.02 -0.36 16 39 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 40 H 0.11 2.64 6.64 -2.39 -0.02 2.62 16 41 H 0.07 2.35 7.63 -2.39 -0.02 2.33 16 42 H 0.08 2.81 8.14 -2.38 -0.02 2.79 16 43 H 0.09 2.70 8.03 -2.39 -0.02 2.69 16 44 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 45 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 46 H 0.12 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -74.12 360.32 5.78 -68.34 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: 0.94 Total: 17.67 kcal Atomic # 6 Polarization: -22.18 SS G_CDS: 4.60 Total: -17.58 kcal Atomic # 7 Polarization: -84.07 SS G_CDS: -1.74 Total: -85.81 kcal Atomic # 8 Polarization: -31.05 SS G_CDS: -0.04 Total: -31.09 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.47 kcal Total: -74.12 5.78 -68.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186199277.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.338 kcal (2) G-P(sol) polarization free energy of solvation -74.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds