Wall clock time and date at job start Tue Mar 31 2020 01:02:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53011 * 109.46911 * 2 1 4 4 C 1.52994 * 109.47650 * 120.00111 * 2 1 3 5 5 C 1.53002 * 115.56079 * 281.03204 * 4 2 1 6 6 C 1.52997 * 117.49918 * 66.71500 * 4 2 1 7 7 C 1.53003 * 60.03265 * 107.50235 * 6 4 2 8 8 H 1.08998 * 117.49646 * 107.47404 * 7 6 4 9 9 C 1.50693 * 117.50403 * 252.47875 * 7 6 4 10 10 O 1.21283 * 120.00152 * 101.97257 * 9 7 6 11 11 N 1.34782 * 119.99930 * 281.97058 * 9 7 6 12 12 C 1.46495 * 120.00074 * 179.97438 * 11 9 7 13 13 C 1.50701 * 109.46817 * 90.00370 * 12 11 9 14 14 H 1.07999 * 119.99948 * 359.97438 * 13 12 11 15 15 C 1.37878 * 120.00207 * 179.97438 * 13 12 11 16 16 N 1.31512 * 120.00297 * 180.02562 * 15 13 12 17 17 Si 1.86807 * 119.99765 * 359.97438 * 15 13 12 18 18 H 1.48498 * 109.46777 * 90.00279 * 17 15 13 19 19 H 1.48496 * 109.46838 * 209.99869 * 17 15 13 20 20 H 1.48493 * 109.46921 * 330.00208 * 17 15 13 21 21 C 1.46504 * 119.99611 * 0.02562 * 11 9 7 22 22 C 1.53005 * 109.47006 * 90.00252 * 21 11 9 23 23 C 1.53001 * 117.49191 * 243.61819 * 22 21 11 24 24 C 1.52996 * 60.00070 * 252.51011 * 23 22 21 25 25 H 1.09005 * 109.47313 * 299.99736 * 1 2 3 26 26 H 1.08996 * 109.47332 * 59.99939 * 1 2 3 27 27 H 1.08999 * 109.47069 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47296 * 240.00611 * 2 1 3 29 29 H 1.09004 * 109.46888 * 296.28278 * 3 2 1 30 30 H 1.09002 * 109.46758 * 56.27901 * 3 2 1 31 31 H 1.08994 * 109.46944 * 176.28036 * 3 2 1 32 32 H 1.09000 * 109.47038 * 154.29309 * 5 4 2 33 33 H 1.09005 * 109.47076 * 274.29139 * 5 4 2 34 34 H 1.09001 * 109.47387 * 34.29166 * 5 4 2 35 35 H 1.08997 * 117.49626 * 0.02562 * 6 4 2 36 36 H 1.08997 * 117.50264 * 215.00665 * 6 4 2 37 37 H 1.09000 * 109.47567 * 210.00051 * 12 11 9 38 38 H 1.09005 * 109.47489 * 330.00728 * 12 11 9 39 39 H 0.97001 * 120.00082 * 179.97438 * 16 15 13 40 40 H 1.09006 * 109.46744 * 209.99634 * 21 11 9 41 41 H 1.08999 * 109.47087 * 329.99715 * 21 11 9 42 42 H 1.08996 * 115.54998 * 29.32313 * 22 21 11 43 43 H 1.09000 * 117.50301 * 359.97438 * 23 22 21 44 44 H 1.08999 * 117.49661 * 145.02463 * 23 22 21 45 45 H 1.08997 * 117.50223 * 252.51505 * 24 23 22 46 46 H 1.09005 * 117.50161 * 107.48947 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 1.2491 5 6 2.0112 0.0968 2.5418 6 6 1.7698 -2.2232 1.3575 7 6 3.1860 -1.7202 1.0705 8 1 3.9189 -1.7943 1.8739 9 6 3.7262 -1.9189 -0.3223 10 8 3.7496 -0.9901 -1.1018 11 7 4.1832 -3.1288 -0.7016 12 6 4.7078 -3.3221 -2.0556 13 6 6.1880 -3.0396 -2.0659 14 1 6.6879 -2.7450 -1.1550 15 6 6.9042 -3.1571 -3.2382 16 7 8.1961 -2.9110 -3.2471 17 14 6.0397 -3.6672 -4.8137 18 1 5.5515 -2.4581 -5.5242 19 1 6.9914 -4.4027 -5.6846 20 1 4.8891 -4.5463 -4.4845 21 6 4.1543 -4.2508 0.2400 22 6 2.8244 -4.9952 0.1057 23 6 1.8932 -5.0023 1.3197 24 6 2.6452 -6.2749 0.9250 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5137 -0.8900 29 1 1.7320 1.9368 -0.9215 30 1 1.6231 1.9753 0.8548 31 1 3.1278 1.4433 0.0667 32 1 1.9424 -0.5764 3.3963 33 1 2.9235 0.6884 2.6179 34 1 1.1471 0.7611 2.5322 35 1 1.2290 -2.6976 0.5387 36 1 1.5711 -2.6286 2.3496 37 1 4.5321 -4.3509 -2.3700 38 1 4.2032 -2.6415 -2.7415 39 1 8.7000 -2.9940 -4.0718 40 1 4.9760 -4.9321 0.0186 41 1 4.2588 -3.8741 1.2575 42 1 2.3642 -4.9612 -0.8818 43 1 2.2282 -4.4771 2.2141 44 1 0.8201 -4.9730 1.1310 45 1 2.0669 -7.0827 0.4765 46 1 3.4749 -6.5866 1.5595 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186199297.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:42 Heat of formation + Delta-G solvation = 6.656154 kcal Electronic energy + Delta-G solvation = -23380.429351 eV Core-core repulsion = 20271.621258 eV Total energy + Delta-G solvation = -3108.808093 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.12894 -37.73327 -37.01284 -34.41128 -33.25101 -32.37530 -28.94730 -28.22562 -26.80649 -26.22657 -23.98611 -23.00144 -21.98350 -21.47099 -20.62229 -18.79541 -17.76915 -16.87886 -16.58974 -15.57397 -15.27021 -14.95250 -14.49360 -14.26348 -13.93173 -13.80277 -13.31499 -12.90107 -12.78973 -12.52698 -12.40845 -12.26110 -12.12746 -11.90088 -11.72694 -11.59620 -11.46417 -11.33107 -11.08258 -10.90181 -10.83219 -10.55538 -10.37105 -10.27698 -10.07777 -9.84909 -9.68962 -9.49463 -9.40023 -8.76707 -8.57271 -7.65730 -6.07120 -4.05475 3.29820 3.31503 3.35732 3.37559 3.65640 3.94782 4.01406 4.40827 4.69425 4.86018 4.94112 4.98979 5.05379 5.11257 5.19694 5.25880 5.43209 5.51479 5.52663 5.56843 5.64931 5.67440 5.77216 5.81994 5.83360 5.88342 5.91520 5.97217 6.04577 6.08556 6.10486 6.16363 6.19444 6.21808 6.26767 6.43416 6.50336 6.67967 6.74373 6.83231 6.97862 7.40368 7.63323 8.31744 8.49245 8.95706 9.06070 9.53581 11.06362 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.014664 B = 0.006347 C = 0.005055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.983412 B = 4410.777446 C = 5537.623326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.073 4.073 3 C -0.132 4.132 4 C -0.092 4.092 5 C -0.112 4.112 6 C -0.149 4.149 7 C -0.173 4.173 8 H 0.119 0.881 9 C 0.539 3.461 10 O -0.530 6.530 11 N -0.587 5.587 12 C 0.216 3.784 13 C -0.526 4.526 14 H 0.074 0.926 15 C 0.072 3.928 16 N -0.898 5.898 17 Si 0.875 3.125 18 H -0.274 1.274 19 H -0.285 1.285 20 H -0.266 1.266 21 C 0.147 3.853 22 C -0.164 4.164 23 C -0.177 4.177 24 C -0.181 4.181 25 H 0.048 0.952 26 H 0.050 0.950 27 H 0.049 0.951 28 H 0.100 0.900 29 H 0.047 0.953 30 H 0.044 0.956 31 H 0.060 0.940 32 H 0.053 0.947 33 H 0.059 0.941 34 H 0.061 0.939 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.029 0.971 38 H 0.035 0.965 39 H 0.264 0.736 40 H 0.085 0.915 41 H 0.071 0.929 42 H 0.103 0.897 43 H 0.096 0.904 44 H 0.088 0.912 45 H 0.089 0.911 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.611 -1.095 11.724 19.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.091 4.091 3 C -0.190 4.190 4 C -0.093 4.093 5 C -0.169 4.169 6 C -0.186 4.186 7 C -0.195 4.195 8 H 0.136 0.864 9 C 0.326 3.674 10 O -0.407 6.407 11 N -0.317 5.317 12 C 0.096 3.904 13 C -0.565 4.565 14 H 0.092 0.908 15 C -0.130 4.130 16 N -0.537 5.537 17 Si 0.702 3.298 18 H -0.200 1.200 19 H -0.211 1.211 20 H -0.191 1.191 21 C 0.022 3.978 22 C -0.183 4.183 23 C -0.214 4.214 24 C -0.219 4.219 25 H 0.067 0.933 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.118 0.882 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.115 0.885 36 H 0.115 0.885 37 H 0.047 0.953 38 H 0.053 0.947 39 H 0.074 0.926 40 H 0.103 0.897 41 H 0.089 0.911 42 H 0.122 0.878 43 H 0.115 0.885 44 H 0.107 0.893 45 H 0.108 0.892 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -15.410 -0.598 11.158 19.035 hybrid contribution -0.112 -0.461 -0.817 0.945 sum -15.521 -1.059 10.341 18.681 Atomic orbital electron populations 1.21816 0.96043 1.01111 1.00926 1.20923 0.94075 0.96783 0.97291 1.21666 1.01785 0.95268 1.00235 1.21548 1.00007 0.90740 0.97003 1.21336 1.01984 0.99332 0.94238 1.23276 0.96631 0.96030 1.02643 1.22351 0.92830 1.06986 0.97283 0.86350 1.19443 0.77799 0.82657 0.87499 1.90614 1.55543 1.40343 1.54199 1.47837 1.60484 1.08391 1.14960 1.19642 0.95255 0.96503 0.79021 1.21330 0.91115 1.46744 0.97309 0.90801 1.24851 0.94717 0.94785 0.98634 1.69898 1.06721 1.49304 1.27741 0.86865 0.79720 0.79287 0.83910 1.19954 1.21095 1.19088 1.20973 0.95014 0.88722 0.93064 1.22880 0.98831 1.00181 0.96419 1.23144 0.97789 1.01131 0.99320 1.22944 1.03274 0.91589 1.04079 0.93271 0.93122 0.93166 0.88234 0.93395 0.93725 0.92139 0.92836 0.92167 0.92027 0.88458 0.88464 0.95323 0.94696 0.92605 0.89650 0.91118 0.87843 0.88536 0.89310 0.89204 0.88808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 9.06 37.16 0.34 -1.35 16 2 C -0.07 -1.06 2.14 -90.62 -0.19 -1.25 16 3 C -0.13 -1.89 8.59 37.16 0.32 -1.57 16 4 C -0.09 -1.21 1.76 -154.47 -0.27 -1.49 16 5 C -0.11 -1.20 8.65 37.16 0.32 -0.88 16 6 C -0.15 -1.76 6.01 -26.73 -0.16 -1.92 16 7 C -0.17 -2.60 4.15 -91.73 -0.38 -2.98 16 8 H 0.12 1.66 7.92 -51.93 -0.41 1.25 16 9 C 0.54 10.87 6.85 -10.99 -0.08 10.79 16 10 O -0.53 -12.67 13.62 5.55 0.08 -12.59 16 11 N -0.59 -11.96 2.46 -175.05 -0.43 -12.39 16 12 C 0.22 5.29 4.23 -5.20 -0.02 5.26 16 13 C -0.53 -15.18 9.94 -34.44 -0.34 -15.52 16 14 H 0.07 2.34 8.06 -52.49 -0.42 1.92 16 15 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 16 N -0.90 -27.87 13.96 55.43 0.77 -27.10 16 17 Si 0.88 21.75 27.47 -169.99 -4.67 17.08 16 18 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 20 H -0.27 -6.23 6.54 56.52 0.37 -5.86 16 21 C 0.15 2.34 5.45 -4.04 -0.02 2.32 16 22 C -0.16 -2.16 5.54 -90.62 -0.50 -2.66 16 23 C -0.18 -1.82 7.16 -26.73 -0.19 -2.01 16 24 C -0.18 -1.94 10.25 -26.73 -0.27 -2.22 16 25 H 0.05 0.52 7.56 -51.93 -0.39 0.12 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.05 0.57 7.78 -51.93 -0.40 0.17 16 28 H 0.10 1.82 5.14 -51.93 -0.27 1.55 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.04 0.53 6.98 -51.93 -0.36 0.17 16 31 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.05 0.49 7.90 -51.93 -0.41 0.08 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.61 6.86 -51.93 -0.36 0.25 16 35 H 0.10 1.23 7.21 -51.93 -0.37 0.85 16 36 H 0.10 0.93 6.98 -51.93 -0.36 0.57 16 37 H 0.03 0.67 7.13 -51.93 -0.37 0.30 16 38 H 0.04 0.91 6.85 -51.93 -0.36 0.56 16 39 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 40 H 0.09 1.45 8.07 -51.93 -0.42 1.03 16 41 H 0.07 0.99 6.46 -51.93 -0.34 0.66 16 42 H 0.10 1.52 8.14 -51.93 -0.42 1.09 16 43 H 0.10 0.92 6.49 -51.93 -0.34 0.58 16 44 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 46 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 LS Contribution 354.37 15.07 5.34 5.34 Total: -1.00 -32.26 354.37 -8.60 -40.86 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -8.13 Total: 2.25 kcal Atomic # 6 Polarization: -11.90 SS G_CDS: -1.56 Total: -13.46 kcal Atomic # 7 Polarization: -39.83 SS G_CDS: 0.34 Total: -39.49 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: 0.08 Total: -12.59 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.67 Total: 17.08 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.26 -8.60 -40.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186199297.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.516 kcal (2) G-P(sol) polarization free energy of solvation -32.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.859 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds