Wall clock time and date at job start Tue Mar 31 2020 01:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47408 * 2 1 4 4 C 1.52993 * 109.46928 * 292.71247 * 3 2 1 5 5 C 1.53002 * 109.46814 * 172.71032 * 3 2 1 6 6 N 1.46501 * 109.46812 * 52.71219 * 3 2 1 7 7 C 1.46494 * 119.99948 * 252.22576 * 6 3 2 8 8 C 1.50701 * 109.47400 * 270.00371 * 7 6 3 9 9 H 1.07998 * 119.99769 * 0.02562 * 8 7 6 10 10 C 1.37878 * 119.99804 * 179.97438 * 8 7 6 11 11 N 1.31510 * 120.00421 * 0.02562 * 10 8 7 12 12 Si 1.86805 * 119.99626 * 180.02562 * 10 8 7 13 13 H 1.48507 * 109.46902 * 180.02562 * 12 10 8 14 14 H 1.48492 * 109.47239 * 60.00216 * 12 10 8 15 15 H 1.48497 * 109.46991 * 299.99950 * 12 10 8 16 16 C 1.34772 * 119.99604 * 72.23346 * 6 3 2 17 17 O 1.21287 * 119.99368 * 177.03383 * 16 6 3 18 18 C 1.50698 * 120.00803 * 357.03182 * 16 6 3 19 19 C 1.52998 * 109.47344 * 187.87296 * 18 16 6 20 20 H 1.08998 * 110.34548 * 54.30108 * 19 18 16 21 21 C 1.51096 * 110.38748 * 292.00847 * 19 18 16 22 22 C 1.30528 * 111.10480 * 224.75209 * 21 19 18 23 23 C 1.51098 * 111.10479 * 0.02562 * 22 21 19 24 24 C 1.54637 * 110.38479 * 176.58641 * 19 18 16 25 25 H 1.09005 * 109.46739 * 304.85529 * 1 2 3 26 26 H 1.09000 * 109.47445 * 64.85317 * 1 2 3 27 27 H 1.08998 * 109.47266 * 184.85487 * 1 2 3 28 28 H 1.09001 * 109.46796 * 240.00032 * 2 1 3 29 29 H 1.09002 * 109.46981 * 120.00815 * 2 1 3 30 30 H 1.09004 * 109.47370 * 180.02562 * 4 3 2 31 31 H 1.09002 * 109.47472 * 299.99765 * 4 3 2 32 32 H 1.09000 * 109.47635 * 60.00235 * 4 3 2 33 33 H 1.08990 * 109.47436 * 335.21734 * 5 3 2 34 34 H 1.09003 * 109.46677 * 95.22057 * 5 3 2 35 35 H 1.09001 * 109.46749 * 215.21368 * 5 3 2 36 36 H 1.08997 * 109.47073 * 150.00042 * 7 6 3 37 37 H 1.09003 * 109.47314 * 30.00866 * 7 6 3 38 38 H 0.97004 * 119.99689 * 0.02562 * 11 10 8 39 39 H 1.09000 * 109.46584 * 307.87577 * 18 16 6 40 40 H 1.09000 * 109.47048 * 67.86964 * 18 16 6 41 41 H 1.08007 * 124.44839 * 44.77679 * 21 19 18 42 42 H 1.08005 * 124.44540 * 180.02562 * 22 21 19 43 43 H 1.08998 * 110.39272 * 135.24589 * 23 22 21 44 44 H 1.08996 * 110.38783 * 257.62438 * 23 22 21 45 45 H 1.09002 * 111.03463 * 261.47997 * 24 19 18 46 46 H 1.09004 * 111.03668 * 25.40934 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.6850 2.1089 -1.3306 5 6 3.5591 1.4462 0.1830 6 7 1.4139 2.1818 1.0989 7 6 0.3901 3.1900 0.8138 8 6 1.0472 4.5323 0.6199 9 1 2.1201 4.6250 0.7006 10 6 0.2785 5.6418 0.3384 11 7 -1.0280 5.5289 0.2397 12 14 1.0931 7.3056 0.0974 13 1 0.0552 8.3276 -0.1916 14 1 2.0448 7.2306 -1.0400 15 1 1.8266 7.6812 1.3327 16 6 1.7799 1.9343 2.3722 17 8 1.3010 2.5836 3.2778 18 6 2.7842 0.8511 2.6707 19 6 2.8756 0.6433 4.1838 20 1 1.8873 0.4482 4.6000 21 6 3.4958 1.8524 4.8446 22 6 4.3900 1.4987 5.7272 23 6 4.5158 -0.0052 5.8017 24 6 3.8373 -0.5228 4.5102 25 1 -0.3633 0.5874 0.8434 26 1 -0.3634 0.4367 -0.9302 27 1 -0.3634 -1.0239 0.0870 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5140 0.8899 30 1 2.0487 3.1364 -1.3308 31 1 2.1508 1.5588 -2.1483 32 1 0.6028 2.1062 -1.4610 33 1 3.8658 0.5332 0.6932 34 1 4.0424 1.4972 -0.7926 35 1 3.8511 2.3110 0.7788 36 1 -0.3085 3.2446 1.6486 37 1 -0.1484 2.9147 -0.0931 38 1 -1.4510 4.6650 0.3652 39 1 2.4691 -0.0775 2.1948 40 1 3.7604 1.1442 2.2845 41 1 3.2333 2.8750 4.6168 42 1 4.9646 2.1903 6.3256 43 1 5.5655 -0.2979 5.8242 44 1 3.9955 -0.3866 6.6803 45 1 3.2857 -1.4440 4.6977 46 1 4.5684 -0.6617 3.7137 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187513933.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:45:55 Heat of formation + Delta-G solvation = -21.255235 kcal Electronic energy + Delta-G solvation = -23709.769395 eV Core-core repulsion = 20599.750974 eV Total energy + Delta-G solvation = -3110.018422 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.14981 -38.35348 -36.63447 -33.59988 -31.64691 -31.46393 -30.08655 -28.80712 -28.01328 -25.94548 -24.78974 -23.37397 -22.47164 -20.80890 -20.15355 -18.63233 -17.82511 -16.88820 -16.01379 -15.84626 -15.49227 -14.71136 -14.53841 -14.41982 -13.88030 -13.69469 -13.14964 -13.05268 -12.73357 -12.25409 -12.16673 -11.84675 -11.82773 -11.75665 -11.64916 -11.48075 -11.24252 -11.16366 -11.10503 -10.96402 -10.90379 -10.67606 -10.56368 -10.36423 -10.23137 -10.08747 -9.95658 -9.04681 -8.81828 -8.68873 -8.32799 -7.52207 -6.32612 -4.03391 2.52149 3.42845 3.46970 3.49176 3.65251 3.89175 4.56413 4.71045 4.73511 4.90497 4.99054 5.13226 5.19491 5.28608 5.40647 5.46221 5.52577 5.54379 5.63741 5.68094 5.73528 5.77242 5.81484 5.86945 5.94918 6.03061 6.03497 6.04456 6.13763 6.23782 6.25352 6.35486 6.38014 6.42064 6.49493 6.60796 6.81841 6.90658 6.99081 7.13436 7.21330 7.53961 8.11860 8.42047 8.51841 8.83767 9.15642 9.65053 11.03960 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.015790 B = 0.006218 C = 0.005072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.797145 B = 4501.768761 C = 5519.707965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.137 4.137 3 C 0.168 3.832 4 C -0.147 4.147 5 C -0.166 4.166 6 N -0.584 5.584 7 C 0.236 3.764 8 C -0.595 4.595 9 H 0.049 0.951 10 C 0.019 3.981 11 N -0.911 5.911 12 Si 1.067 2.933 13 H -0.282 1.282 14 H -0.289 1.289 15 H -0.289 1.289 16 C 0.508 3.492 17 O -0.541 6.541 18 C -0.150 4.150 19 C -0.056 4.056 20 H 0.084 0.916 21 C -0.125 4.125 22 C -0.199 4.199 23 C -0.095 4.095 24 C -0.122 4.122 25 H 0.060 0.940 26 H 0.055 0.945 27 H 0.046 0.954 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.080 0.920 31 H 0.051 0.949 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.066 0.934 36 H 0.026 0.974 37 H 0.026 0.974 38 H 0.266 0.734 39 H 0.091 0.909 40 H 0.099 0.901 41 H 0.130 0.870 42 H 0.119 0.881 43 H 0.064 0.936 44 H 0.068 0.932 45 H 0.070 0.930 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.067 -14.162 1.813 17.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.175 4.175 3 C 0.082 3.918 4 C -0.204 4.204 5 C -0.224 4.224 6 N -0.316 5.316 7 C 0.116 3.884 8 C -0.634 4.634 9 H 0.067 0.933 10 C -0.185 4.185 11 N -0.548 5.548 12 Si 0.896 3.104 13 H -0.208 1.208 14 H -0.215 1.215 15 H -0.216 1.216 16 C 0.295 3.705 17 O -0.418 6.418 18 C -0.190 4.190 19 C -0.075 4.075 20 H 0.102 0.898 21 C -0.142 4.142 22 C -0.217 4.217 23 C -0.132 4.132 24 C -0.160 4.160 25 H 0.080 0.920 26 H 0.075 0.925 27 H 0.065 0.935 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.099 0.901 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.044 0.956 37 H 0.044 0.956 38 H 0.077 0.923 39 H 0.109 0.891 40 H 0.117 0.883 41 H 0.148 0.852 42 H 0.137 0.863 43 H 0.082 0.918 44 H 0.087 0.913 45 H 0.088 0.912 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 9.476 -12.207 1.936 15.574 hybrid contribution 0.346 -1.494 0.289 1.561 sum 9.821 -13.701 2.225 17.004 Atomic orbital electron populations 1.21770 0.95478 1.00761 1.02803 1.22212 0.96988 0.96521 1.01809 1.20289 0.91965 0.90739 0.88782 1.22105 1.02471 1.02212 0.93599 1.22653 0.95263 1.02140 1.02320 1.48183 1.40521 1.38636 1.04259 1.19325 0.86845 0.86278 0.95914 1.22203 0.95084 0.93775 1.52324 0.93294 1.25716 0.95494 1.03138 0.94145 1.70802 1.09556 1.27877 1.46554 0.83565 0.75044 0.75441 0.76380 1.20774 1.21549 1.21558 1.20282 0.82948 0.84407 0.82894 1.90654 1.55926 1.50530 1.44738 1.22459 1.00645 0.99161 0.96717 1.20853 0.99421 0.93053 0.94127 0.89767 1.23453 0.95054 0.99600 0.96130 1.23177 1.01084 0.96281 1.01177 1.21309 1.00302 0.93707 0.97873 1.22585 0.98257 0.97574 0.97554 0.92045 0.92546 0.93477 0.91427 0.91565 0.90080 0.93028 0.91738 0.91991 0.92016 0.91528 0.95557 0.95594 0.92326 0.89059 0.88262 0.85237 0.86347 0.91754 0.91315 0.91173 0.91124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 9.32 37.16 0.35 -1.84 16 2 C -0.14 -1.83 4.71 -26.73 -0.13 -1.95 16 3 C 0.17 2.72 0.70 -131.82 -0.09 2.62 16 4 C -0.15 -2.48 7.03 37.15 0.26 -2.22 16 5 C -0.17 -2.31 7.30 37.16 0.27 -2.04 16 6 N -0.58 -11.99 1.37 -160.19 -0.22 -12.21 16 7 C 0.24 5.96 3.15 -5.20 -0.02 5.95 16 8 C -0.59 -16.63 8.22 -34.44 -0.28 -16.91 16 9 H 0.05 1.40 7.81 -52.49 -0.41 0.99 16 10 C 0.02 0.55 5.46 -17.82 -0.10 0.45 16 11 N -0.91 -27.63 13.65 55.43 0.76 -26.88 16 12 Si 1.07 25.69 29.90 -169.99 -5.08 20.61 16 13 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 14 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 15 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 16 C 0.51 10.41 6.85 -10.99 -0.08 10.34 16 17 O -0.54 -13.44 14.14 5.55 0.08 -13.37 16 18 C -0.15 -2.26 2.89 -27.88 -0.08 -2.34 16 19 C -0.06 -0.82 2.54 -90.72 -0.23 -1.05 16 20 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 21 C -0.12 -1.98 9.20 -35.70 -0.33 -2.31 16 22 C -0.20 -2.65 10.78 -35.70 -0.38 -3.03 16 23 C -0.09 -1.04 6.81 -26.74 -0.18 -1.23 16 24 C -0.12 -1.35 6.72 -24.92 -0.17 -1.52 16 25 H 0.06 1.07 6.81 -51.93 -0.35 0.71 16 26 H 0.06 0.83 6.87 -51.93 -0.36 0.47 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.07 0.81 4.85 -51.93 -0.25 0.56 16 30 H 0.08 1.61 7.05 -51.93 -0.37 1.24 16 31 H 0.05 0.70 8.12 -51.93 -0.42 0.28 16 32 H 0.06 1.17 5.10 -51.93 -0.26 0.91 16 33 H 0.06 0.71 5.66 -51.93 -0.29 0.41 16 34 H 0.06 0.76 7.75 -51.93 -0.40 0.36 16 35 H 0.07 1.08 7.03 -51.93 -0.37 0.71 16 36 H 0.03 0.76 7.33 -51.93 -0.38 0.38 16 37 H 0.03 0.66 5.86 -51.93 -0.30 0.35 16 38 H 0.27 8.05 7.22 -40.82 -0.29 7.75 16 39 H 0.09 1.19 4.74 -51.93 -0.25 0.94 16 40 H 0.10 1.40 5.18 -51.93 -0.27 1.13 16 41 H 0.13 2.43 7.17 -52.48 -0.38 2.05 16 42 H 0.12 1.42 8.06 -52.48 -0.42 0.99 16 43 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 46 H 0.07 0.71 7.91 -51.93 -0.41 0.30 16 LS Contribution 341.37 15.07 5.14 5.14 Total: -1.00 -32.04 341.37 -8.03 -40.07 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -7.52 Total: 3.71 kcal Atomic # 6 Polarization: -15.90 SS G_CDS: -1.19 Total: -17.09 kcal Atomic # 7 Polarization: -39.62 SS G_CDS: 0.54 Total: -39.08 kcal Atomic # 8 Polarization: -13.44 SS G_CDS: 0.08 Total: -13.37 kcal Atomic # 14 Polarization: 25.69 SS G_CDS: -5.08 Total: 20.61 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.04 -8.03 -40.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187513933.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.817 kcal (2) G-P(sol) polarization free energy of solvation -32.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds