Wall clock time and date at job start Tue Mar 31 2020 01:46:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53006 * 109.47158 * 2 1 4 4 C 1.52997 * 109.46912 * 308.70235 * 3 2 1 5 5 C 1.52994 * 109.47308 * 188.69737 * 3 2 1 6 6 N 1.46503 * 109.46729 * 68.69575 * 3 2 1 7 7 C 1.46495 * 119.99995 * 246.50355 * 6 3 2 8 8 C 1.50695 * 109.47248 * 98.37009 * 7 6 3 9 9 H 1.07997 * 120.00033 * 0.45078 * 8 7 6 10 10 C 1.37883 * 120.00271 * 180.45682 * 8 7 6 11 11 N 1.31516 * 119.99978 * 179.97438 * 10 8 7 12 12 Si 1.86798 * 119.99701 * 359.97438 * 10 8 7 13 13 H 1.48505 * 109.47015 * 270.00054 * 12 10 8 14 14 H 1.48498 * 109.47156 * 30.00280 * 12 10 8 15 15 H 1.48498 * 109.47065 * 150.00327 * 12 10 8 16 16 C 1.34779 * 119.99832 * 66.50720 * 6 3 2 17 17 O 1.21277 * 120.00015 * 176.84855 * 16 6 3 18 18 C 1.50699 * 119.99929 * 356.83891 * 16 6 3 19 19 H 1.09002 * 109.64303 * 345.45289 * 18 16 6 20 20 C 1.53029 * 109.63938 * 106.08949 * 18 16 6 21 21 C 1.50066 * 110.14867 * 169.12515 * 20 18 16 22 22 C 1.29448 * 124.07145 * 342.86044 * 21 20 18 23 23 C 1.50067 * 124.07857 * 0.47615 * 22 21 20 24 24 C 1.53022 * 110.14509 * 342.86596 * 23 22 21 25 25 H 1.09006 * 109.47391 * 63.08505 * 1 2 3 26 26 H 1.09002 * 109.47473 * 183.08563 * 1 2 3 27 27 H 1.08998 * 109.47473 * 303.08862 * 1 2 3 28 28 H 1.09005 * 109.47104 * 240.00429 * 2 1 3 29 29 H 1.08997 * 109.47177 * 120.00343 * 2 1 3 30 30 H 1.09006 * 109.46607 * 179.97438 * 4 3 2 31 31 H 1.09003 * 109.46885 * 299.99338 * 4 3 2 32 32 H 1.08998 * 109.47664 * 59.99561 * 4 3 2 33 33 H 1.08999 * 109.46988 * 312.46249 * 5 3 2 34 34 H 1.08997 * 109.47122 * 72.46198 * 5 3 2 35 35 H 1.09001 * 109.47198 * 192.46255 * 5 3 2 36 36 H 1.08996 * 109.47416 * 338.36432 * 7 6 3 37 37 H 1.09010 * 109.47178 * 218.36591 * 7 6 3 38 38 H 0.97002 * 119.99599 * 179.97438 * 11 10 8 39 39 H 1.09004 * 109.35303 * 289.32776 * 20 18 16 40 40 H 1.08990 * 109.35967 * 48.91240 * 20 18 16 41 41 H 1.07995 * 117.96718 * 162.84627 * 21 20 18 42 42 H 1.08004 * 117.95894 * 180.49579 * 22 21 20 43 43 H 1.08998 * 109.35889 * 222.66272 * 23 22 21 44 44 H 1.09004 * 109.24531 * 103.00092 * 23 22 21 45 45 H 1.08994 * 109.64515 * 289.75211 * 24 23 22 46 46 H 1.09004 * 109.81669 * 169.22262 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.3596 2.2240 -1.1257 5 6 3.5543 1.4481 -0.2181 6 7 1.7296 2.0702 1.2869 7 6 0.7691 3.1745 1.3505 8 6 -0.5771 2.6457 1.7736 9 1 -0.7028 1.5935 1.9820 10 6 -1.6485 3.5051 1.8945 11 7 -2.8235 3.0435 2.2632 12 14 -1.4310 5.3251 1.5346 13 1 -1.0411 6.0330 2.7805 14 1 -0.3702 5.5040 0.5109 15 1 -2.7089 5.8854 1.0263 16 6 2.3277 1.6316 2.4122 17 8 2.1145 2.1878 3.4686 18 6 3.2614 0.4498 2.3578 19 1 3.1361 -0.0727 1.4095 20 6 4.7075 0.9300 2.4985 21 6 5.6224 -0.2403 2.7116 22 6 5.2230 -1.4153 3.0801 23 6 3.7885 -1.7740 3.3357 24 6 2.9524 -0.5053 3.5176 25 1 -0.3634 0.4652 -0.9164 26 1 -0.3634 -1.0262 0.0553 27 1 -0.3634 0.5610 0.8610 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 1.7226 3.2518 -1.1254 31 1 1.5905 1.7570 -2.0832 32 1 0.2807 2.2200 -0.9704 33 1 4.0195 0.7183 0.4445 34 1 3.7731 1.1896 -1.2541 35 1 3.9491 2.4404 -0.0001 36 1 0.6845 3.6396 0.3684 37 1 1.1128 3.9137 2.0742 38 1 -3.5771 3.6482 2.3486 39 1 5.0024 1.4587 1.5921 40 1 4.7823 1.6067 3.3496 41 1 6.6795 -0.0933 2.5472 42 1 5.9688 -2.1852 3.2120 43 1 3.7233 -2.3820 4.2380 44 1 3.4037 -2.3419 2.4886 45 1 3.2105 -0.0289 4.4633 46 1 1.8920 -0.7576 3.5119 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187518573.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:46:47 Heat of formation + Delta-G solvation = -4.652204 kcal Electronic energy + Delta-G solvation = -24256.042378 eV Core-core repulsion = 21146.743918 eV Total energy + Delta-G solvation = -3109.298460 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.52562 -37.73745 -36.65211 -33.19246 -31.81875 -31.38581 -30.88290 -29.75508 -28.24520 -26.59376 -23.92971 -23.12339 -22.70398 -21.72154 -20.33577 -18.08463 -17.59454 -17.04676 -16.43094 -15.50090 -15.10673 -14.74472 -14.31291 -14.29050 -13.82557 -13.68481 -13.25022 -13.03673 -12.84817 -12.61268 -12.44057 -12.24963 -12.11817 -12.10097 -11.64847 -11.42444 -11.33815 -11.14478 -11.00974 -10.71261 -10.60887 -10.50976 -10.40902 -10.37369 -10.20569 -10.01068 -9.61117 -9.16181 -8.95476 -8.75054 -8.53587 -7.58877 -6.04128 -4.01144 2.29847 3.30332 3.36227 3.38825 3.44486 3.84450 4.42474 4.72221 4.86582 4.98958 5.02654 5.20740 5.25949 5.30604 5.36256 5.40853 5.43867 5.57095 5.63179 5.70889 5.74850 5.83709 5.88992 5.94700 5.99928 6.04405 6.06246 6.11930 6.19529 6.28088 6.36031 6.39439 6.52693 6.58584 6.61957 6.68674 6.76918 6.84085 6.95624 7.01615 7.25942 7.49916 7.67237 8.40233 8.52697 9.00706 9.13300 9.56750 11.08353 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.021028 B = 0.006246 C = 0.005912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.234630 B = 4481.646209 C = 4735.010289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.138 4.138 3 C 0.168 3.832 4 C -0.154 4.154 5 C -0.186 4.186 6 N -0.583 5.583 7 C 0.208 3.792 8 C -0.519 4.519 9 H 0.085 0.915 10 C 0.072 3.928 11 N -0.898 5.898 12 Si 0.871 3.129 13 H -0.275 1.275 14 H -0.267 1.267 15 H -0.287 1.287 16 C 0.518 3.482 17 O -0.539 6.539 18 C -0.130 4.130 19 H 0.114 0.886 20 C -0.089 4.089 21 C -0.151 4.151 22 C -0.158 4.158 23 C -0.090 4.090 24 C -0.104 4.104 25 H 0.052 0.948 26 H 0.037 0.963 27 H 0.102 0.898 28 H 0.060 0.940 29 H 0.072 0.928 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.062 0.938 35 H 0.059 0.941 36 H 0.040 0.960 37 H 0.027 0.973 38 H 0.263 0.737 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.102 0.898 42 H 0.100 0.900 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.072 0.928 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.856 -7.863 -5.682 17.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.176 4.176 3 C 0.082 3.918 4 C -0.211 4.211 5 C -0.244 4.244 6 N -0.315 5.315 7 C 0.087 3.913 8 C -0.557 4.557 9 H 0.102 0.898 10 C -0.130 4.130 11 N -0.537 5.537 12 Si 0.699 3.301 13 H -0.201 1.201 14 H -0.192 1.192 15 H -0.212 1.212 16 C 0.305 3.695 17 O -0.416 6.416 18 C -0.151 4.151 19 H 0.131 0.869 20 C -0.126 4.126 21 C -0.169 4.169 22 C -0.176 4.176 23 C -0.127 4.127 24 C -0.142 4.142 25 H 0.071 0.929 26 H 0.056 0.944 27 H 0.121 0.879 28 H 0.078 0.922 29 H 0.090 0.910 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.104 0.896 33 H 0.100 0.900 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.058 0.942 37 H 0.045 0.955 38 H 0.073 0.927 39 H 0.099 0.901 40 H 0.099 0.901 41 H 0.120 0.880 42 H 0.118 0.882 43 H 0.090 0.910 44 H 0.091 0.909 45 H 0.091 0.909 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 14.534 -7.475 -5.101 17.121 hybrid contribution -0.003 0.947 -0.226 0.974 sum 14.531 -6.528 -5.328 16.798 Atomic orbital electron populations 1.22204 0.94205 1.01071 1.05365 1.22239 0.98270 0.95550 1.01544 1.20330 0.93559 0.93077 0.84845 1.22167 1.03290 0.99434 0.96173 1.22973 0.95929 1.03017 1.02463 1.48062 1.42519 1.35546 1.05334 1.19758 0.88314 0.85780 0.97408 1.21411 0.91581 0.96988 1.45764 0.89781 1.24837 0.95160 0.98215 0.94755 1.69894 1.00729 1.35274 1.47760 0.86929 0.77577 0.86433 0.79207 1.20115 1.19156 1.21248 1.20156 0.80940 0.84595 0.83817 1.90653 1.63439 1.58186 1.29334 1.22087 0.94750 0.96206 1.02065 0.86867 1.20621 0.92082 0.96838 1.03023 1.22020 0.99202 0.94826 1.00813 1.22060 0.97289 0.97241 1.00974 1.20473 0.92635 0.97861 1.01746 1.21464 1.00054 0.94400 0.98293 0.92884 0.94354 0.87927 0.92169 0.91023 0.92470 0.92389 0.89604 0.90035 0.91934 0.92153 0.94249 0.95507 0.92706 0.90072 0.90132 0.87980 0.88204 0.90957 0.90937 0.90889 0.91179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.03 9.13 37.15 0.34 -2.69 16 2 C -0.14 -2.07 4.67 -26.73 -0.12 -2.19 16 3 C 0.17 2.66 0.74 -131.82 -0.10 2.56 16 4 C -0.15 -2.39 6.47 37.16 0.24 -2.15 16 5 C -0.19 -2.37 6.97 37.15 0.26 -2.11 16 6 N -0.58 -11.75 2.07 -160.18 -0.33 -12.08 16 7 C 0.21 4.97 3.58 -5.20 -0.02 4.95 16 8 C -0.52 -14.33 8.85 -34.44 -0.30 -14.63 16 9 H 0.08 2.52 5.66 -52.49 -0.30 2.22 16 10 C 0.07 2.06 5.47 -17.82 -0.10 1.97 16 11 N -0.90 -27.23 13.96 55.43 0.77 -26.45 16 12 Si 0.87 21.46 27.48 -169.99 -4.67 16.79 16 13 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 14 H -0.27 -6.16 6.53 56.52 0.37 -5.80 16 15 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 16 C 0.52 10.63 5.96 -10.98 -0.07 10.56 16 17 O -0.54 -13.53 16.36 5.56 0.09 -13.44 16 18 C -0.13 -2.01 0.86 -91.55 -0.08 -2.09 16 19 H 0.11 1.59 2.64 -51.93 -0.14 1.45 16 20 C -0.09 -1.18 4.72 -28.17 -0.13 -1.32 16 21 C -0.15 -1.69 9.80 -35.90 -0.35 -2.04 16 22 C -0.16 -1.70 9.80 -35.90 -0.35 -2.05 16 23 C -0.09 -1.03 6.12 -28.18 -0.17 -1.21 16 24 C -0.10 -1.56 4.99 -26.52 -0.13 -1.69 16 25 H 0.05 0.90 6.51 -51.93 -0.34 0.56 16 26 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.10 2.27 3.96 -51.93 -0.21 2.07 16 28 H 0.06 0.75 8.13 -51.93 -0.42 0.33 16 29 H 0.07 1.07 4.94 -51.93 -0.26 0.81 16 30 H 0.06 0.89 7.30 -51.93 -0.38 0.51 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.09 1.55 5.69 -51.93 -0.30 1.26 16 33 H 0.08 0.98 3.21 -51.93 -0.17 0.81 16 34 H 0.06 0.66 8.09 -51.93 -0.42 0.24 16 35 H 0.06 0.79 7.91 -51.93 -0.41 0.38 16 36 H 0.04 0.90 4.35 -51.93 -0.23 0.67 16 37 H 0.03 0.70 7.09 -51.92 -0.37 0.33 16 38 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 39 H 0.08 0.99 5.65 -51.93 -0.29 0.70 16 40 H 0.08 1.21 8.10 -51.93 -0.42 0.79 16 41 H 0.10 0.96 8.06 -52.49 -0.42 0.54 16 42 H 0.10 0.90 8.06 -52.48 -0.42 0.47 16 43 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 45 H 0.07 1.19 8.10 -51.93 -0.42 0.77 16 46 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 331.20 15.07 4.99 4.99 Total: -1.00 -31.80 331.20 -7.42 -39.22 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -7.18 Total: 5.10 kcal Atomic # 6 Polarization: -13.04 SS G_CDS: -1.09 Total: -14.13 kcal Atomic # 7 Polarization: -38.98 SS G_CDS: 0.44 Total: -38.54 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: 0.09 Total: -13.44 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.67 Total: 16.79 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.80 -7.42 -39.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187518573.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.570 kcal (2) G-P(sol) polarization free energy of solvation -31.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds