Wall clock time and date at job start Tue Mar 31 2020 01:46:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53006 * 109.47158 * 2 1 4 4 C 1.52997 * 109.46912 * 308.70235 * 3 2 1 5 5 C 1.52994 * 109.47308 * 188.69737 * 3 2 1 6 6 N 1.46503 * 109.46729 * 68.69575 * 3 2 1 7 7 C 1.46495 * 119.99995 * 246.50355 * 6 3 2 8 8 C 1.50695 * 109.47248 * 98.37009 * 7 6 3 9 9 H 1.07997 * 120.00033 * 0.45078 * 8 7 6 10 10 C 1.37883 * 120.00271 * 180.45682 * 8 7 6 11 11 N 1.31516 * 119.99978 * 179.97438 * 10 8 7 12 12 Si 1.86798 * 119.99701 * 359.97438 * 10 8 7 13 13 H 1.48505 * 109.47015 * 270.00054 * 12 10 8 14 14 H 1.48498 * 109.47156 * 30.00280 * 12 10 8 15 15 H 1.48498 * 109.47065 * 150.00327 * 12 10 8 16 16 C 1.34779 * 119.99832 * 66.50720 * 6 3 2 17 17 O 1.21277 * 120.00015 * 176.84855 * 16 6 3 18 18 C 1.50699 * 119.99929 * 356.83891 * 16 6 3 19 19 H 1.09002 * 109.64303 * 345.45289 * 18 16 6 20 20 C 1.53029 * 109.63938 * 106.08949 * 18 16 6 21 21 C 1.50066 * 110.14867 * 169.12515 * 20 18 16 22 22 C 1.29448 * 124.07145 * 342.86044 * 21 20 18 23 23 C 1.50067 * 124.07857 * 0.47615 * 22 21 20 24 24 C 1.53022 * 110.14509 * 342.86596 * 23 22 21 25 25 H 1.09006 * 109.47391 * 63.08505 * 1 2 3 26 26 H 1.09002 * 109.47473 * 183.08563 * 1 2 3 27 27 H 1.08998 * 109.47473 * 303.08862 * 1 2 3 28 28 H 1.09005 * 109.47104 * 240.00429 * 2 1 3 29 29 H 1.08997 * 109.47177 * 120.00343 * 2 1 3 30 30 H 1.09006 * 109.46607 * 179.97438 * 4 3 2 31 31 H 1.09003 * 109.46885 * 299.99338 * 4 3 2 32 32 H 1.08998 * 109.47664 * 59.99561 * 4 3 2 33 33 H 1.08999 * 109.46988 * 312.46249 * 5 3 2 34 34 H 1.08997 * 109.47122 * 72.46198 * 5 3 2 35 35 H 1.09001 * 109.47198 * 192.46255 * 5 3 2 36 36 H 1.08996 * 109.47416 * 338.36432 * 7 6 3 37 37 H 1.09010 * 109.47178 * 218.36591 * 7 6 3 38 38 H 0.97002 * 119.99599 * 179.97438 * 11 10 8 39 39 H 1.09004 * 109.35303 * 289.32776 * 20 18 16 40 40 H 1.08990 * 109.35967 * 48.91240 * 20 18 16 41 41 H 1.07995 * 117.96718 * 162.84627 * 21 20 18 42 42 H 1.08004 * 117.95894 * 180.49579 * 22 21 20 43 43 H 1.08998 * 109.35889 * 222.66272 * 23 22 21 44 44 H 1.09004 * 109.24531 * 103.00092 * 23 22 21 45 45 H 1.08994 * 109.64515 * 289.75211 * 24 23 22 46 46 H 1.09004 * 109.81669 * 169.22262 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.3596 2.2240 -1.1257 5 6 3.5543 1.4481 -0.2181 6 7 1.7296 2.0702 1.2869 7 6 0.7691 3.1745 1.3505 8 6 -0.5771 2.6457 1.7736 9 1 -0.7028 1.5935 1.9820 10 6 -1.6485 3.5051 1.8945 11 7 -2.8235 3.0435 2.2632 12 14 -1.4310 5.3251 1.5346 13 1 -1.0411 6.0330 2.7805 14 1 -0.3702 5.5040 0.5109 15 1 -2.7089 5.8854 1.0263 16 6 2.3277 1.6316 2.4122 17 8 2.1145 2.1878 3.4686 18 6 3.2614 0.4498 2.3578 19 1 3.1361 -0.0727 1.4095 20 6 4.7075 0.9300 2.4985 21 6 5.6224 -0.2403 2.7116 22 6 5.2230 -1.4153 3.0801 23 6 3.7885 -1.7740 3.3357 24 6 2.9524 -0.5053 3.5176 25 1 -0.3634 0.4652 -0.9164 26 1 -0.3634 -1.0262 0.0553 27 1 -0.3634 0.5610 0.8610 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 1.7226 3.2518 -1.1254 31 1 1.5905 1.7570 -2.0832 32 1 0.2807 2.2200 -0.9704 33 1 4.0195 0.7183 0.4445 34 1 3.7731 1.1896 -1.2541 35 1 3.9491 2.4404 -0.0001 36 1 0.6845 3.6396 0.3684 37 1 1.1128 3.9137 2.0742 38 1 -3.5771 3.6482 2.3486 39 1 5.0024 1.4587 1.5921 40 1 4.7823 1.6067 3.3496 41 1 6.6795 -0.0933 2.5472 42 1 5.9688 -2.1852 3.2120 43 1 3.7233 -2.3820 4.2380 44 1 3.4037 -2.3419 2.4886 45 1 3.2105 -0.0289 4.4633 46 1 1.8920 -0.7576 3.5119 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187518573.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:46:46 Heat of formation + Delta-G solvation = -23.832171 kcal Electronic energy + Delta-G solvation = -24256.874084 eV Core-core repulsion = 21146.743918 eV Total energy + Delta-G solvation = -3110.130166 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.94089 -38.91413 -38.20630 -35.15376 -33.58492 -32.64214 -31.94745 -31.04475 -29.89010 -27.98127 -25.31435 -24.44555 -23.93370 -23.38177 -21.70897 -19.46321 -19.20560 -18.67566 -17.62048 -17.12403 -16.41839 -16.36464 -15.72234 -15.61279 -15.44609 -15.05528 -14.62406 -14.36383 -14.18975 -14.11836 -13.81897 -13.58579 -13.32412 -13.28517 -13.15029 -12.90830 -12.83101 -12.61401 -12.45845 -12.26952 -12.11439 -11.96761 -11.83159 -11.77013 -11.57632 -11.30914 -11.15268 -10.81478 -10.75696 -10.39822 -9.81602 -9.29514 -8.26837 -6.27948 1.29841 1.34013 1.41136 1.46656 1.85337 2.31919 2.33792 3.06112 3.54883 3.80225 3.81239 3.82810 4.05190 4.10569 4.24194 4.33196 4.39929 4.44060 4.54774 4.61519 4.66055 4.71128 4.74056 4.78005 4.83580 4.91235 4.94279 4.99212 5.02920 5.05981 5.09974 5.11388 5.20387 5.21915 5.29319 5.38404 5.42125 5.44598 5.53655 5.71362 5.82278 5.86515 6.10636 6.35591 6.74842 6.82869 7.29856 7.53263 8.88779 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.021028 B = 0.006246 C = 0.005912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.234630 B = 4481.646209 C = 4735.010289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.133 4.133 3 C 0.155 3.845 4 C -0.154 4.154 5 C -0.179 4.179 6 N -0.585 5.585 7 C 0.217 3.783 8 C -0.513 4.513 9 H 0.048 0.952 10 C 0.011 3.989 11 N -0.946 5.946 12 Si 0.934 3.066 13 H -0.283 1.283 14 H -0.239 1.239 15 H -0.278 1.278 16 C 0.507 3.493 17 O -0.600 6.600 18 C -0.118 4.118 19 H 0.136 0.864 20 C -0.086 4.086 21 C -0.157 4.157 22 C -0.153 4.153 23 C -0.086 4.086 24 C -0.107 4.107 25 H 0.055 0.945 26 H 0.048 0.952 27 H 0.050 0.950 28 H 0.104 0.896 29 H 0.070 0.930 30 H 0.055 0.945 31 H 0.097 0.903 32 H 0.052 0.948 33 H 0.089 0.911 34 H 0.098 0.902 35 H 0.055 0.945 36 H 0.059 0.941 37 H 0.001 0.999 38 H 0.264 0.736 39 H 0.097 0.903 40 H 0.055 0.945 41 H 0.129 0.871 42 H 0.130 0.870 43 H 0.085 0.915 44 H 0.089 0.911 45 H 0.049 0.951 46 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.184 -9.021 -8.379 21.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.170 4.170 3 C 0.071 3.929 4 C -0.211 4.211 5 C -0.237 4.237 6 N -0.316 5.316 7 C 0.095 3.905 8 C -0.551 4.551 9 H 0.066 0.934 10 C -0.186 4.186 11 N -0.587 5.587 12 Si 0.758 3.242 13 H -0.209 1.209 14 H -0.163 1.163 15 H -0.203 1.203 16 C 0.296 3.704 17 O -0.482 6.482 18 C -0.138 4.138 19 H 0.153 0.847 20 C -0.123 4.123 21 C -0.175 4.175 22 C -0.171 4.171 23 C -0.123 4.123 24 C -0.145 4.145 25 H 0.074 0.926 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.122 0.878 29 H 0.089 0.911 30 H 0.074 0.926 31 H 0.116 0.884 32 H 0.072 0.928 33 H 0.108 0.892 34 H 0.117 0.883 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.019 0.981 38 H 0.073 0.927 39 H 0.115 0.885 40 H 0.074 0.926 41 H 0.147 0.853 42 H 0.147 0.853 43 H 0.104 0.896 44 H 0.107 0.893 45 H 0.068 0.932 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 17.894 -8.660 -7.851 21.373 hybrid contribution -1.111 1.217 0.648 1.770 sum 16.783 -7.444 -7.203 19.722 Atomic orbital electron populations 1.22084 0.96679 1.00806 1.03031 1.22241 0.95907 0.95375 1.03521 1.20797 0.96288 0.93204 0.82600 1.22168 1.01070 0.99927 0.97898 1.22913 0.92571 1.03204 1.04962 1.48195 1.41200 1.34732 1.07424 1.19426 0.87245 0.86682 0.97185 1.21637 0.93462 0.95556 1.44489 0.93370 1.25711 0.94812 1.03142 0.94919 1.70043 1.01754 1.37019 1.49882 0.85920 0.78570 0.80352 0.79364 1.20892 1.16263 1.20305 1.21186 0.81020 0.85282 0.82889 1.90610 1.65682 1.60315 1.31570 1.22097 0.94798 0.93830 1.03103 0.84720 1.20608 0.90932 0.97869 1.02881 1.22053 0.99915 0.93853 1.01670 1.22250 0.97033 0.97935 0.99876 1.20481 0.92795 0.95782 1.03205 1.21469 0.99470 0.96327 0.97258 0.92600 0.93265 0.93076 0.87796 0.91147 0.92557 0.88438 0.92850 0.89243 0.88313 0.92597 0.92338 0.98074 0.92683 0.88488 0.92622 0.85320 0.85258 0.89631 0.89281 0.93191 0.93672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.96 9.13 71.98 0.66 -5.30 16 2 C -0.13 -3.65 4.67 30.59 0.14 -3.50 16 3 C 0.15 4.58 0.74 3.60 0.00 4.59 16 4 C -0.15 -4.40 6.47 71.98 0.47 -3.93 16 5 C -0.18 -3.81 6.97 71.98 0.50 -3.31 16 6 N -0.59 -23.91 2.07 -779.09 -1.61 -25.52 16 7 C 0.22 10.68 3.58 85.63 0.31 10.98 16 8 C -0.51 -29.86 8.85 25.60 0.23 -29.63 16 9 H 0.05 3.12 5.66 -2.91 -0.02 3.10 16 10 C 0.01 0.68 5.47 84.66 0.46 1.14 16 11 N -0.95 -60.25 13.96 21.45 0.30 -59.95 16 12 Si 0.93 45.36 27.48 68.60 1.88 47.24 16 13 H -0.28 -14.01 7.11 99.48 0.71 -13.31 16 14 H -0.24 -10.44 6.53 99.48 0.65 -9.79 16 15 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 16 C 0.51 21.51 5.96 87.66 0.52 22.03 16 17 O -0.60 -32.15 16.36 -3.02 -0.05 -32.20 16 18 C -0.12 -3.56 0.86 -11.40 -0.01 -3.57 16 19 H 0.14 3.44 2.64 -2.39 -0.01 3.44 16 20 C -0.09 -2.15 4.72 29.66 0.14 -2.01 16 21 C -0.16 -2.96 9.80 27.03 0.27 -2.70 16 22 C -0.15 -2.70 9.80 27.03 0.27 -2.44 16 23 C -0.09 -1.76 6.12 29.66 0.18 -1.58 16 24 C -0.11 -3.26 4.99 30.73 0.15 -3.10 16 25 H 0.05 1.89 6.51 -2.38 -0.02 1.87 16 26 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.05 2.38 3.96 -2.39 -0.01 2.37 16 28 H 0.10 2.03 8.13 -2.38 -0.02 2.01 16 29 H 0.07 1.96 4.94 -2.39 -0.01 1.94 16 30 H 0.06 1.61 7.30 -2.38 -0.02 1.59 16 31 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.05 1.89 5.69 -2.39 -0.01 1.87 16 33 H 0.09 1.76 3.21 -2.39 -0.01 1.75 16 34 H 0.10 1.46 8.09 -2.39 -0.02 1.44 16 35 H 0.05 1.27 7.91 -2.39 -0.02 1.25 16 36 H 0.06 2.65 4.35 -2.39 -0.01 2.64 16 37 H 0.00 0.07 7.09 -2.38 -0.02 0.05 16 38 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 39 H 0.10 2.09 5.65 -2.38 -0.01 2.08 16 40 H 0.06 1.68 8.10 -2.39 -0.02 1.66 16 41 H 0.13 1.81 8.06 -2.91 -0.02 1.79 16 42 H 0.13 1.63 8.06 -2.91 -0.02 1.61 16 43 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.09 1.57 8.14 -2.38 -0.02 1.55 16 45 H 0.05 1.71 8.10 -2.39 -0.02 1.69 16 46 H 0.04 1.55 8.14 -2.38 -0.02 1.53 16 Total: -1.00 -76.53 331.20 5.72 -70.81 By element: Atomic # 1 Polarization: 21.05 SS G_CDS: 0.91 Total: 21.97 kcal Atomic # 6 Polarization: -26.63 SS G_CDS: 4.28 Total: -22.34 kcal Atomic # 7 Polarization: -84.16 SS G_CDS: -1.31 Total: -85.48 kcal Atomic # 8 Polarization: -32.15 SS G_CDS: -0.05 Total: -32.20 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 1.88 Total: 47.24 kcal Total: -76.53 5.72 -70.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187518573.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.974 kcal (2) G-P(sol) polarization free energy of solvation -76.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds