Wall clock time and date at job start Tue Mar 31 2020 01:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47102 * 2 1 4 4 C 1.52990 * 109.47246 * 295.62314 * 3 2 1 5 5 C 1.53005 * 109.47097 * 175.61983 * 3 2 1 6 6 N 1.46502 * 109.47034 * 55.62296 * 3 2 1 7 7 C 1.46502 * 119.99883 * 239.19478 * 6 3 2 8 8 C 1.50693 * 109.47345 * 267.52269 * 7 6 3 9 9 H 1.07996 * 120.00271 * 0.02562 * 8 7 6 10 10 C 1.37883 * 120.00011 * 179.97438 * 8 7 6 11 11 N 1.31518 * 119.99730 * 0.02562 * 10 8 7 12 12 Si 1.86794 * 120.00213 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.47216 * 359.97438 * 12 10 8 14 14 H 1.48495 * 109.47319 * 120.00141 * 12 10 8 15 15 H 1.48506 * 109.47038 * 240.00276 * 12 10 8 16 16 C 1.34774 * 120.00187 * 59.20263 * 6 3 2 17 17 O 1.21284 * 120.00234 * 4.05328 * 16 6 3 18 18 C 1.50703 * 120.00045 * 184.05529 * 16 6 3 19 19 H 1.08996 * 109.64106 * 30.28250 * 18 16 6 20 20 C 1.52866 * 109.69997 * 269.85063 * 18 16 6 21 21 C 1.50069 * 110.22864 * 191.10045 * 20 18 16 22 22 C 1.29446 * 124.07745 * 16.70381 * 21 20 18 23 23 C 1.50070 * 124.07123 * 359.77883 * 22 21 20 24 24 C 1.53028 * 110.14758 * 17.13783 * 23 22 21 25 25 H 1.09003 * 109.46583 * 305.19569 * 1 2 3 26 26 H 1.08996 * 109.47104 * 65.19294 * 1 2 3 27 27 H 1.08991 * 109.47153 * 185.19715 * 1 2 3 28 28 H 1.08995 * 109.47231 * 240.00022 * 2 1 3 29 29 H 1.09008 * 109.46785 * 119.99887 * 2 1 3 30 30 H 1.08998 * 109.47466 * 179.01444 * 4 3 2 31 31 H 1.08999 * 109.47058 * 299.01107 * 4 3 2 32 32 H 1.08999 * 109.47384 * 59.00720 * 4 3 2 33 33 H 1.09001 * 109.47206 * 305.32249 * 5 3 2 34 34 H 1.09005 * 109.46796 * 65.32143 * 5 3 2 35 35 H 1.08998 * 109.47014 * 185.32129 * 5 3 2 36 36 H 1.08999 * 109.46657 * 27.52826 * 7 6 3 37 37 H 1.09004 * 109.47040 * 147.52014 * 7 6 3 38 38 H 0.97003 * 120.00076 * 180.02562 * 11 10 8 39 39 H 1.08997 * 109.45655 * 70.78413 * 20 18 16 40 40 H 1.09001 * 109.17632 * 311.24673 * 20 18 16 41 41 H 1.08001 * 117.96023 * 196.97286 * 21 20 18 42 42 H 1.07995 * 117.96419 * 179.81471 * 22 21 20 43 43 H 1.09002 * 109.35331 * 137.34541 * 23 22 21 44 44 H 1.09001 * 109.36091 * 256.92909 * 23 22 21 45 45 H 1.09003 * 109.63865 * 70.24419 * 24 23 22 46 46 H 1.08995 * 109.63974 * 190.66183 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6220 2.1312 -1.3005 5 6 3.5661 1.4439 0.1102 6 7 1.4675 2.1628 1.1400 7 6 0.6528 3.3596 0.9159 8 6 1.5305 4.5831 0.9747 9 1 2.5894 4.4797 1.1600 10 6 0.9818 5.8347 0.7909 11 7 -0.3076 5.9606 0.5647 12 14 2.0699 7.3513 0.8631 13 1 3.4723 6.9421 1.1296 14 1 2.0018 8.0716 -0.4337 15 1 1.6005 8.2459 1.9515 16 6 1.6905 1.7247 2.3949 17 8 2.4246 0.7782 2.5853 18 6 1.0275 2.4107 3.5615 19 1 0.0681 2.8220 3.2477 20 6 1.9252 3.5364 4.0753 21 6 1.4138 4.0489 5.3898 22 6 0.5692 3.4133 6.1370 23 6 -0.0203 2.0774 5.7909 24 6 0.8099 1.4025 4.6967 25 1 -0.3632 0.5924 0.8398 26 1 -0.3633 0.4312 -0.9328 27 1 -0.3633 -1.0233 0.0931 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5139 0.8901 30 1 1.9702 3.1641 -1.2930 31 1 2.0623 1.6056 -2.1479 32 1 0.5356 2.1146 -1.3875 33 1 3.8676 0.8716 0.9875 34 1 3.9953 0.9915 -0.7839 35 1 3.9226 2.4695 0.2053 36 1 0.1795 3.2986 -0.0641 37 1 -0.1151 3.4259 1.6867 38 1 -0.6936 6.8410 0.4350 39 1 1.9377 4.3503 3.3504 40 1 2.9381 3.1555 4.2053 41 1 1.7694 5.0096 5.7317 42 1 0.2697 3.8734 7.0671 43 1 -0.0294 1.4455 6.6790 44 1 -1.0420 2.2140 5.4367 45 1 1.7732 1.0960 5.1043 46 1 0.2775 0.5297 4.3188 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187518589.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:46:51 Heat of formation + Delta-G solvation = -40.655418 kcal Electronic energy + Delta-G solvation = -24149.911558 eV Core-core repulsion = 21039.051881 eV Total energy + Delta-G solvation = -3110.859677 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.98082 -37.76188 -35.93369 -33.71081 -32.00859 -30.65412 -30.27729 -29.67512 -27.68144 -26.25218 -23.59080 -23.10134 -22.66909 -22.23760 -19.85628 -17.57793 -17.44400 -16.52293 -16.09053 -15.51494 -15.19706 -14.59893 -14.27927 -13.92845 -13.90605 -13.19972 -13.08796 -12.66968 -12.54607 -12.47941 -12.23420 -11.94196 -11.86593 -11.78745 -11.66317 -11.40066 -11.13812 -11.12644 -10.99248 -10.70282 -10.64401 -10.45544 -10.26434 -10.21839 -10.07994 -9.89655 -9.82015 -9.56236 -8.66952 -8.54441 -8.41951 -7.56978 -6.16693 -4.21719 2.69951 3.20499 3.30129 3.33070 3.52665 3.96352 4.33803 5.07550 5.15412 5.21111 5.27489 5.37517 5.48095 5.57813 5.71021 5.74927 5.80776 5.81844 5.94411 6.01474 6.02468 6.08867 6.17724 6.20037 6.21690 6.28098 6.32604 6.40115 6.49240 6.53581 6.56246 6.63883 6.71123 6.74708 6.81044 6.92082 6.97884 7.02460 7.05632 7.30632 7.39532 7.68074 7.80845 8.10918 8.47444 8.85081 9.16651 9.44512 10.89542 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.010763 B = 0.010106 C = 0.006151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2600.768613 B = 2769.979431 C = 4551.316769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.132 4.132 3 C 0.179 3.821 4 C -0.150 4.150 5 C -0.158 4.158 6 N -0.583 5.583 7 C 0.230 3.770 8 C -0.526 4.526 9 H 0.061 0.939 10 C 0.067 3.933 11 N -0.889 5.889 12 Si 0.888 3.112 13 H -0.272 1.272 14 H -0.284 1.284 15 H -0.283 1.283 16 C 0.525 3.475 17 O -0.572 6.572 18 C -0.098 4.098 19 H 0.096 0.904 20 C -0.087 4.087 21 C -0.133 4.133 22 C -0.175 4.175 23 C -0.086 4.086 24 C -0.099 4.099 25 H 0.056 0.944 26 H 0.051 0.949 27 H 0.043 0.957 28 H 0.058 0.942 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.050 0.950 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.048 0.952 35 H 0.056 0.944 36 H 0.044 0.956 37 H 0.036 0.964 38 H 0.263 0.737 39 H 0.109 0.891 40 H 0.067 0.933 41 H 0.100 0.900 42 H 0.096 0.904 43 H 0.065 0.935 44 H 0.069 0.931 45 H 0.068 0.932 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.629 -6.642 3.269 7.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.171 4.171 3 C 0.094 3.906 4 C -0.207 4.207 5 C -0.216 4.216 6 N -0.314 5.314 7 C 0.110 3.890 8 C -0.565 4.565 9 H 0.079 0.921 10 C -0.136 4.136 11 N -0.528 5.528 12 Si 0.715 3.285 13 H -0.196 1.196 14 H -0.210 1.210 15 H -0.209 1.209 16 C 0.313 3.687 17 O -0.454 6.454 18 C -0.119 4.119 19 H 0.114 0.886 20 C -0.124 4.124 21 C -0.151 4.151 22 C -0.193 4.193 23 C -0.123 4.123 24 C -0.137 4.137 25 H 0.075 0.925 26 H 0.070 0.930 27 H 0.062 0.938 28 H 0.077 0.923 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.067 0.933 35 H 0.076 0.924 36 H 0.062 0.938 37 H 0.053 0.947 38 H 0.073 0.927 39 H 0.127 0.873 40 H 0.085 0.915 41 H 0.118 0.882 42 H 0.114 0.886 43 H 0.084 0.916 44 H 0.088 0.912 45 H 0.086 0.914 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.848 -6.971 3.292 7.756 hybrid contribution 0.413 1.271 -0.014 1.336 sum 1.261 -5.700 3.278 6.695 Atomic orbital electron populations 1.21725 0.96124 1.00426 1.02007 1.21918 0.96001 0.96791 1.02361 1.20162 0.92904 0.90839 0.86674 1.22117 1.01706 1.02121 0.94766 1.22184 0.95150 1.02382 1.01841 1.48336 1.50633 1.28281 1.04117 1.19553 0.90497 0.80528 0.98394 1.21482 0.95059 0.90635 1.49312 0.92063 1.24902 0.94895 0.98848 0.94996 1.69925 1.10690 1.23902 1.48233 0.86597 0.80966 0.83130 0.77779 1.19633 1.20973 1.20890 1.20344 0.81037 0.83119 0.84179 1.90511 1.39120 1.30224 1.85532 1.21230 1.00988 0.96374 0.93351 0.88625 1.20479 0.97716 0.98711 0.95469 1.22097 0.98060 0.98913 0.96016 1.21920 1.00254 0.97354 0.99744 1.20412 0.99198 0.94334 0.98373 1.21421 1.00447 0.97015 0.94811 0.92510 0.92960 0.93800 0.92337 0.90348 0.90284 0.93087 0.92019 0.90920 0.93329 0.92446 0.93840 0.94658 0.92692 0.87313 0.91463 0.88243 0.88621 0.91607 0.91245 0.91362 0.92087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 9.41 37.16 0.35 -1.94 16 2 C -0.13 -2.20 4.68 -26.73 -0.13 -2.32 16 3 C 0.18 3.27 0.73 -131.82 -0.10 3.17 16 4 C -0.15 -2.62 6.96 37.15 0.26 -2.36 16 5 C -0.16 -2.83 8.32 37.16 0.31 -2.52 16 6 N -0.58 -11.76 1.42 -160.18 -0.23 -11.99 16 7 C 0.23 5.18 4.35 -5.20 -0.02 5.16 16 8 C -0.53 -12.85 6.79 -34.44 -0.23 -13.09 16 9 H 0.06 1.55 7.78 -52.49 -0.41 1.14 16 10 C 0.07 1.69 5.46 -17.82 -0.10 1.59 16 11 N -0.89 -23.69 13.29 55.43 0.74 -22.95 16 12 Si 0.89 20.06 29.54 -169.99 -5.02 15.04 16 13 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 14 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 15 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 16 C 0.52 10.64 5.93 -10.98 -0.07 10.57 16 17 O -0.57 -12.33 12.66 5.55 0.07 -12.26 16 18 C -0.10 -1.83 1.94 -91.64 -0.18 -2.01 16 19 H 0.10 1.89 5.96 -51.93 -0.31 1.58 16 20 C -0.09 -1.60 5.42 -28.26 -0.15 -1.76 16 21 C -0.13 -2.16 9.81 -35.90 -0.35 -2.51 16 22 C -0.17 -2.58 9.80 -35.90 -0.35 -2.93 16 23 C -0.09 -1.21 6.12 -28.17 -0.17 -1.38 16 24 C -0.10 -1.60 4.78 -26.52 -0.13 -1.73 16 25 H 0.06 0.99 7.15 -51.93 -0.37 0.62 16 26 H 0.05 0.79 6.79 -51.93 -0.35 0.43 16 27 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.08 1.44 6.38 -51.92 -0.33 1.11 16 30 H 0.08 1.56 7.20 -51.93 -0.37 1.18 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.06 1.09 5.47 -51.93 -0.28 0.80 16 33 H 0.07 1.40 6.26 -51.93 -0.33 1.08 16 34 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.04 1.03 5.66 -51.93 -0.29 0.74 16 37 H 0.04 0.85 5.84 -51.93 -0.30 0.54 16 38 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 39 H 0.11 2.28 5.94 -51.93 -0.31 1.97 16 40 H 0.07 1.25 8.09 -51.93 -0.42 0.83 16 41 H 0.10 1.49 8.06 -52.49 -0.42 1.07 16 42 H 0.10 1.23 8.06 -52.49 -0.42 0.80 16 43 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 45 H 0.07 1.15 8.08 -51.93 -0.42 0.73 16 46 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 344.87 15.07 5.20 5.20 Total: -1.00 -26.21 344.87 -8.16 -34.37 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: -7.86 Total: 6.65 kcal Atomic # 6 Polarization: -13.01 SS G_CDS: -1.06 Total: -14.07 kcal Atomic # 7 Polarization: -35.44 SS G_CDS: 0.51 Total: -34.93 kcal Atomic # 8 Polarization: -12.33 SS G_CDS: 0.07 Total: -12.26 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -26.21 -8.16 -34.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187518589.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.281 kcal (2) G-P(sol) polarization free energy of solvation -26.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds