Wall clock time and date at job start Tue Mar 31 2020 01:46:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47102 * 2 1 4 4 C 1.52990 * 109.47246 * 295.62314 * 3 2 1 5 5 C 1.53005 * 109.47097 * 175.61983 * 3 2 1 6 6 N 1.46502 * 109.47034 * 55.62296 * 3 2 1 7 7 C 1.46502 * 119.99883 * 239.19478 * 6 3 2 8 8 C 1.50693 * 109.47345 * 267.52269 * 7 6 3 9 9 H 1.07996 * 120.00271 * 0.02562 * 8 7 6 10 10 C 1.37883 * 120.00011 * 179.97438 * 8 7 6 11 11 N 1.31518 * 119.99730 * 0.02562 * 10 8 7 12 12 Si 1.86794 * 120.00213 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.47216 * 359.97438 * 12 10 8 14 14 H 1.48495 * 109.47319 * 120.00141 * 12 10 8 15 15 H 1.48506 * 109.47038 * 240.00276 * 12 10 8 16 16 C 1.34774 * 120.00187 * 59.20263 * 6 3 2 17 17 O 1.21284 * 120.00234 * 4.05328 * 16 6 3 18 18 C 1.50703 * 120.00045 * 184.05529 * 16 6 3 19 19 H 1.08996 * 109.64106 * 30.28250 * 18 16 6 20 20 C 1.52866 * 109.69997 * 269.85063 * 18 16 6 21 21 C 1.50069 * 110.22864 * 191.10045 * 20 18 16 22 22 C 1.29446 * 124.07745 * 16.70381 * 21 20 18 23 23 C 1.50070 * 124.07123 * 359.77883 * 22 21 20 24 24 C 1.53028 * 110.14758 * 17.13783 * 23 22 21 25 25 H 1.09003 * 109.46583 * 305.19569 * 1 2 3 26 26 H 1.08996 * 109.47104 * 65.19294 * 1 2 3 27 27 H 1.08991 * 109.47153 * 185.19715 * 1 2 3 28 28 H 1.08995 * 109.47231 * 240.00022 * 2 1 3 29 29 H 1.09008 * 109.46785 * 119.99887 * 2 1 3 30 30 H 1.08998 * 109.47466 * 179.01444 * 4 3 2 31 31 H 1.08999 * 109.47058 * 299.01107 * 4 3 2 32 32 H 1.08999 * 109.47384 * 59.00720 * 4 3 2 33 33 H 1.09001 * 109.47206 * 305.32249 * 5 3 2 34 34 H 1.09005 * 109.46796 * 65.32143 * 5 3 2 35 35 H 1.08998 * 109.47014 * 185.32129 * 5 3 2 36 36 H 1.08999 * 109.46657 * 27.52826 * 7 6 3 37 37 H 1.09004 * 109.47040 * 147.52014 * 7 6 3 38 38 H 0.97003 * 120.00076 * 180.02562 * 11 10 8 39 39 H 1.08997 * 109.45655 * 70.78413 * 20 18 16 40 40 H 1.09001 * 109.17632 * 311.24673 * 20 18 16 41 41 H 1.08001 * 117.96023 * 196.97286 * 21 20 18 42 42 H 1.07995 * 117.96419 * 179.81471 * 22 21 20 43 43 H 1.09002 * 109.35331 * 137.34541 * 23 22 21 44 44 H 1.09001 * 109.36091 * 256.92909 * 23 22 21 45 45 H 1.09003 * 109.63865 * 70.24419 * 24 23 22 46 46 H 1.08995 * 109.63974 * 190.66183 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6220 2.1312 -1.3005 5 6 3.5661 1.4439 0.1102 6 7 1.4675 2.1628 1.1400 7 6 0.6528 3.3596 0.9159 8 6 1.5305 4.5831 0.9747 9 1 2.5894 4.4797 1.1600 10 6 0.9818 5.8347 0.7909 11 7 -0.3076 5.9606 0.5647 12 14 2.0699 7.3513 0.8631 13 1 3.4723 6.9421 1.1296 14 1 2.0018 8.0716 -0.4337 15 1 1.6005 8.2459 1.9515 16 6 1.6905 1.7247 2.3949 17 8 2.4246 0.7782 2.5853 18 6 1.0275 2.4107 3.5615 19 1 0.0681 2.8220 3.2477 20 6 1.9252 3.5364 4.0753 21 6 1.4138 4.0489 5.3898 22 6 0.5692 3.4133 6.1370 23 6 -0.0203 2.0774 5.7909 24 6 0.8099 1.4025 4.6967 25 1 -0.3632 0.5924 0.8398 26 1 -0.3633 0.4312 -0.9328 27 1 -0.3633 -1.0233 0.0931 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5139 0.8901 30 1 1.9702 3.1641 -1.2930 31 1 2.0623 1.6056 -2.1479 32 1 0.5356 2.1146 -1.3875 33 1 3.8676 0.8716 0.9875 34 1 3.9953 0.9915 -0.7839 35 1 3.9226 2.4695 0.2053 36 1 0.1795 3.2986 -0.0641 37 1 -0.1151 3.4259 1.6867 38 1 -0.6936 6.8410 0.4350 39 1 1.9377 4.3503 3.3504 40 1 2.9381 3.1555 4.2053 41 1 1.7694 5.0096 5.7317 42 1 0.2697 3.8734 7.0671 43 1 -0.0294 1.4455 6.6790 44 1 -1.0420 2.2140 5.4367 45 1 1.7732 1.0960 5.1043 46 1 0.2775 0.5297 4.3188 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187518589.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:46:50 Heat of formation + Delta-G solvation = -51.345670 kcal Electronic energy + Delta-G solvation = -24150.375122 eV Core-core repulsion = 21039.051881 eV Total energy + Delta-G solvation = -3111.323241 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.55107 -39.13441 -37.49569 -35.47005 -33.79141 -32.00071 -31.58864 -31.08975 -29.40426 -27.89968 -25.03567 -24.78427 -24.08776 -23.67931 -21.31399 -19.20251 -18.82772 -18.39400 -17.66413 -17.04166 -16.59544 -16.38343 -15.88663 -15.37417 -15.26955 -14.59590 -14.46898 -14.29615 -14.11974 -13.94621 -13.72874 -13.48799 -13.38775 -13.12776 -13.08576 -12.89268 -12.82564 -12.74301 -12.56222 -12.31962 -12.18781 -12.00151 -11.81361 -11.66915 -11.58057 -11.50656 -11.26961 -11.17450 -10.54398 -10.10488 -9.81362 -9.26939 -8.13731 -6.23624 1.37917 1.42964 1.46658 1.51382 1.89235 2.35175 2.48740 3.16208 3.67292 3.88817 3.91661 3.98839 4.09072 4.18718 4.33113 4.44293 4.45089 4.49168 4.54264 4.66551 4.70891 4.71639 4.82537 4.83457 4.85127 4.96499 4.98012 5.04422 5.05571 5.07717 5.19349 5.24960 5.27130 5.30911 5.31633 5.39185 5.41398 5.51716 5.58226 5.76075 5.81774 6.06800 6.12149 6.17681 6.69674 6.95437 7.41467 7.55984 8.91367 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.010763 B = 0.010106 C = 0.006151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2600.768613 B = 2769.979431 C = 4551.316769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.125 4.125 3 C 0.167 3.833 4 C -0.141 4.141 5 C -0.150 4.150 6 N -0.584 5.584 7 C 0.249 3.751 8 C -0.519 4.519 9 H 0.048 0.952 10 C 0.027 3.973 11 N -0.917 5.917 12 Si 0.940 3.060 13 H -0.273 1.273 14 H -0.281 1.281 15 H -0.280 1.280 16 C 0.519 3.481 17 O -0.585 6.585 18 C -0.098 4.098 19 H 0.081 0.919 20 C -0.079 4.079 21 C -0.161 4.161 22 C -0.157 4.157 23 C -0.086 4.086 24 C -0.093 4.093 25 H 0.032 0.968 26 H 0.059 0.941 27 H 0.063 0.937 28 H 0.085 0.915 29 H 0.060 0.940 30 H 0.051 0.949 31 H 0.082 0.918 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.078 0.922 35 H 0.036 0.964 36 H 0.034 0.966 37 H 0.020 0.980 38 H 0.264 0.736 39 H 0.078 0.922 40 H 0.057 0.943 41 H 0.110 0.890 42 H 0.125 0.875 43 H 0.096 0.904 44 H 0.077 0.923 45 H 0.060 0.940 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.467 -7.401 3.692 8.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.163 4.163 3 C 0.082 3.918 4 C -0.198 4.198 5 C -0.208 4.208 6 N -0.314 5.314 7 C 0.128 3.872 8 C -0.558 4.558 9 H 0.066 0.934 10 C -0.173 4.173 11 N -0.557 5.557 12 Si 0.766 3.234 13 H -0.197 1.197 14 H -0.207 1.207 15 H -0.206 1.206 16 C 0.309 3.691 17 O -0.468 6.468 18 C -0.119 4.119 19 H 0.099 0.901 20 C -0.116 4.116 21 C -0.179 4.179 22 C -0.175 4.175 23 C -0.123 4.123 24 C -0.131 4.131 25 H 0.051 0.949 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.104 0.896 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.101 0.899 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.097 0.903 35 H 0.055 0.945 36 H 0.052 0.948 37 H 0.037 0.963 38 H 0.074 0.926 39 H 0.096 0.904 40 H 0.075 0.925 41 H 0.128 0.872 42 H 0.142 0.858 43 H 0.114 0.886 44 H 0.096 0.904 45 H 0.079 0.921 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.696 -7.738 3.712 8.610 hybrid contribution 0.475 1.438 -0.150 1.522 sum 1.171 -6.299 3.562 7.331 Atomic orbital electron populations 1.21684 0.95519 1.01319 1.01343 1.21844 0.96459 0.95231 1.02749 1.20472 0.93073 0.91940 0.86271 1.22028 1.01536 1.00774 0.95510 1.22102 0.95078 1.01011 1.02566 1.48328 1.50359 1.27718 1.04990 1.19162 0.90014 0.80934 0.97086 1.21527 0.94456 0.91496 1.48318 0.93411 1.25458 0.95789 1.01036 0.94982 1.70002 1.11833 1.24415 1.49471 0.85780 0.79454 0.80427 0.77704 1.19748 1.20713 1.20610 1.20670 0.80879 0.82978 0.84598 1.90496 1.39776 1.30812 1.85731 1.21232 0.99900 0.97013 0.93718 0.90106 1.20296 0.97481 0.97558 0.96307 1.22070 1.00179 1.00168 0.95524 1.22249 0.98169 0.97108 0.99982 1.20494 0.98869 0.94297 0.98640 1.21386 1.00612 0.96559 0.94561 0.94909 0.92211 0.91772 0.89609 0.92162 0.93007 0.89891 0.92421 0.92499 0.90317 0.94497 0.94833 0.96253 0.92634 0.90397 0.92470 0.87205 0.85757 0.88610 0.90445 0.92078 0.91878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.27 9.41 71.98 0.68 -3.59 16 2 C -0.12 -3.95 4.68 30.60 0.14 -3.81 16 3 C 0.17 6.01 0.73 3.60 0.00 6.01 16 4 C -0.14 -4.82 6.96 71.98 0.50 -4.32 16 5 C -0.15 -5.32 8.32 71.98 0.60 -4.72 16 6 N -0.58 -24.09 1.42 -779.09 -1.10 -25.19 16 7 C 0.25 11.57 4.35 85.63 0.37 11.94 16 8 C -0.52 -26.10 6.79 25.60 0.17 -25.93 16 9 H 0.05 2.50 7.78 -2.91 -0.02 2.48 16 10 C 0.03 1.41 5.46 84.66 0.46 1.88 16 11 N -0.92 -49.60 13.29 21.45 0.28 -49.31 16 12 Si 0.94 41.67 29.54 68.60 2.03 43.70 16 13 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 14 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 15 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 16 C 0.52 21.56 5.93 87.66 0.52 22.08 16 17 O -0.59 -25.60 12.66 -3.04 -0.04 -25.64 16 18 C -0.10 -3.70 1.94 -11.45 -0.02 -3.72 16 19 H 0.08 3.30 5.96 -2.39 -0.01 3.29 16 20 C -0.08 -3.01 5.42 29.61 0.16 -2.85 16 21 C -0.16 -5.16 9.81 27.04 0.27 -4.89 16 22 C -0.16 -4.28 9.80 27.04 0.27 -4.01 16 23 C -0.09 -2.21 6.12 29.66 0.18 -2.03 16 24 C -0.09 -2.95 4.78 30.73 0.15 -2.81 16 25 H 0.03 1.13 7.15 -2.39 -0.02 1.11 16 26 H 0.06 1.70 6.79 -2.39 -0.02 1.68 16 27 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 29 H 0.06 2.15 6.38 -2.38 -0.02 2.14 16 30 H 0.05 2.04 7.20 -2.39 -0.02 2.03 16 31 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.06 2.00 5.47 -2.39 -0.01 1.98 16 33 H 0.06 2.20 6.26 -2.39 -0.01 2.18 16 34 H 0.08 2.28 8.14 -2.38 -0.02 2.26 16 35 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.03 1.64 5.66 -2.39 -0.01 1.62 16 37 H 0.02 0.97 5.84 -2.38 -0.01 0.96 16 38 H 0.26 13.67 8.31 -92.71 -0.77 12.90 16 39 H 0.08 3.41 5.94 -2.39 -0.01 3.40 16 40 H 0.06 2.22 8.09 -2.39 -0.02 2.20 16 41 H 0.11 3.22 8.06 -2.91 -0.02 3.20 16 42 H 0.12 2.73 8.06 -2.91 -0.02 2.70 16 43 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 44 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 45 H 0.06 2.02 8.08 -2.39 -0.02 2.00 16 46 H 0.06 1.95 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -56.83 344.87 6.55 -50.27 By element: Atomic # 1 Polarization: 26.01 SS G_CDS: 0.94 Total: 26.95 kcal Atomic # 6 Polarization: -25.23 SS G_CDS: 4.45 Total: -20.78 kcal Atomic # 7 Polarization: -73.68 SS G_CDS: -0.82 Total: -74.50 kcal Atomic # 8 Polarization: -25.60 SS G_CDS: -0.04 Total: -25.64 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 2.03 Total: 43.70 kcal Total: -56.83 6.55 -50.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187518589.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.071 kcal (2) G-P(sol) polarization free energy of solvation -56.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds