Wall clock time and date at job start Tue Mar 31 2020 01:47:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47408 * 2 1 4 4 C 1.53003 * 109.47044 * 306.19793 * 3 2 1 5 5 C 1.52999 * 109.47510 * 186.20196 * 3 2 1 6 6 N 1.46494 * 109.47392 * 66.19618 * 3 2 1 7 7 C 1.46503 * 120.00342 * 244.50537 * 6 3 2 8 8 C 1.50699 * 109.47161 * 97.23181 * 7 6 3 9 9 H 1.07998 * 119.99937 * 358.21833 * 8 7 6 10 10 C 1.37871 * 120.00215 * 178.21017 * 8 7 6 11 11 N 1.31520 * 119.99856 * 0.02562 * 10 8 7 12 12 Si 1.86804 * 120.00418 * 180.02562 * 10 8 7 13 13 H 1.48493 * 109.47240 * 89.99579 * 12 10 8 14 14 H 1.48497 * 109.47272 * 210.00212 * 12 10 8 15 15 H 1.48504 * 109.46420 * 329.99936 * 12 10 8 16 16 C 1.34781 * 120.00064 * 64.51071 * 6 3 2 17 17 O 1.21274 * 120.00194 * 175.88520 * 16 6 3 18 18 C 1.50701 * 119.99495 * 355.87903 * 16 6 3 19 19 H 1.08999 * 115.55410 * 0.09609 * 18 16 6 20 20 C 1.53006 * 117.49532 * 214.43088 * 18 16 6 21 21 C 1.53000 * 117.49595 * 145.77192 * 18 16 6 22 22 H 1.08998 * 117.49578 * 214.97543 * 21 18 16 23 23 C 1.52997 * 117.49796 * 359.97438 * 21 18 16 24 24 C 1.53011 * 117.49540 * 255.09560 * 23 21 18 25 25 C 1.53005 * 117.49838 * 186.43920 * 23 21 18 26 26 H 1.09000 * 109.46957 * 177.04168 * 1 2 3 27 27 H 1.08998 * 109.46861 * 297.04744 * 1 2 3 28 28 H 1.09004 * 109.46660 * 57.04538 * 1 2 3 29 29 H 1.09000 * 109.47455 * 239.99305 * 2 1 3 30 30 H 1.09007 * 109.46614 * 119.99703 * 2 1 3 31 31 H 1.08999 * 109.47527 * 185.87213 * 4 3 2 32 32 H 1.09000 * 109.47067 * 305.87400 * 4 3 2 33 33 H 1.09009 * 109.46914 * 65.86839 * 4 3 2 34 34 H 1.09001 * 109.46786 * 301.96318 * 5 3 2 35 35 H 1.08998 * 109.47287 * 61.95827 * 5 3 2 36 36 H 1.08995 * 109.47398 * 181.96730 * 5 3 2 37 37 H 1.08997 * 109.47536 * 217.23469 * 7 6 3 38 38 H 1.09004 * 109.47126 * 337.23452 * 7 6 3 39 39 H 0.97005 * 119.99832 * 179.97438 * 11 10 8 40 40 H 1.09002 * 117.50185 * 359.97438 * 20 18 16 41 41 H 1.08999 * 117.49621 * 145.00412 * 20 18 16 42 42 H 1.08996 * 115.55333 * 40.76753 * 23 21 18 43 43 H 1.09000 * 117.49634 * 0.02562 * 24 23 21 44 44 H 1.09005 * 117.49525 * 145.02379 * 24 23 21 45 45 H 1.09002 * 117.50072 * 214.97624 * 25 23 21 46 46 H 1.08998 * 117.49734 * 359.97028 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.4069 2.2072 -1.1641 5 6 3.5621 1.4453 -0.1558 6 7 1.6773 2.0887 1.2637 7 6 0.7491 3.2221 1.2668 8 6 -0.6395 2.7332 1.5890 9 1 -0.8185 1.6796 1.7447 10 6 -1.6815 3.6310 1.6853 11 7 -1.4636 4.9140 1.4954 12 14 -3.4026 3.0251 2.0854 13 1 -3.5966 3.0221 3.5576 14 1 -4.4028 3.9244 1.4560 15 1 -3.5766 1.6469 1.5604 16 6 2.1977 1.6407 2.4234 17 8 1.9568 2.2213 3.4605 18 6 3.0788 0.4181 2.4313 19 1 3.2485 -0.0454 1.4596 20 6 2.9961 -0.5044 3.6492 21 6 4.2271 0.3815 3.4418 22 1 5.1522 -0.1064 3.1348 23 6 4.3933 1.5892 4.3663 24 6 5.5378 2.5585 4.0635 25 6 5.6268 1.6218 5.2710 26 1 -0.3633 -1.0263 -0.0530 27 1 -0.3633 0.4673 0.9153 28 1 -0.3633 0.5591 -0.8624 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.8475 3.2022 -1.2277 32 1 1.5891 1.6691 -2.0943 33 1 0.3329 2.2953 -0.9996 34 1 4.0113 0.8709 0.6544 35 1 3.8303 0.9958 -1.1119 36 1 3.9290 2.4710 -0.1208 37 1 1.0627 3.9466 2.0183 38 1 0.7491 3.6945 0.2845 39 1 -2.1968 5.5456 1.5627 40 1 2.3047 -0.2268 4.4449 41 1 3.1115 -1.5747 3.4786 42 1 3.4685 2.0100 4.7609 43 1 6.1720 2.3359 3.2054 44 1 5.3660 3.6169 4.2593 45 1 5.5136 2.0645 6.2606 46 1 6.3196 0.7827 5.2078 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189941457.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:47:32 Heat of formation + Delta-G solvation = 31.703216 kcal Electronic energy + Delta-G solvation = -23903.283570 eV Core-core repulsion = 20795.561599 eV Total energy + Delta-G solvation = -3107.721971 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.20342 -37.91174 -36.40133 -34.83706 -33.02139 -31.65209 -29.89336 -28.55887 -26.28790 -24.17375 -23.36319 -23.06955 -22.22933 -21.92943 -20.29090 -19.85397 -17.70626 -16.66673 -15.92843 -15.73300 -15.07842 -14.58376 -14.45715 -14.31485 -13.75965 -13.53501 -13.34264 -12.83134 -12.66531 -12.32751 -12.23079 -11.92152 -11.70383 -11.44015 -11.38578 -11.25371 -11.15936 -11.02892 -10.94621 -10.83140 -10.53691 -10.50159 -10.37062 -10.29161 -9.97847 -9.82725 -9.68529 -9.23084 -9.15724 -8.63891 -8.36452 -7.48703 -5.98801 -4.01720 3.17513 3.33127 3.39589 3.41408 3.88807 4.03958 4.46269 4.49541 4.72801 4.95598 5.06913 5.14552 5.17391 5.34662 5.38066 5.38857 5.47933 5.53873 5.54138 5.56157 5.72921 5.78755 5.87842 5.92332 5.97144 6.02796 6.09619 6.15540 6.16468 6.26601 6.30254 6.37139 6.38685 6.40626 6.58709 6.66786 6.78811 6.87969 7.03359 7.19836 7.58101 7.73052 8.02238 8.31417 8.58373 8.99876 9.27133 9.62909 11.09118 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.016438 B = 0.006486 C = 0.005631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.006189 B = 4315.733224 C = 4971.560095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.139 4.139 3 C 0.168 3.832 4 C -0.150 4.150 5 C -0.178 4.178 6 N -0.584 5.584 7 C 0.242 3.758 8 C -0.518 4.518 9 H 0.066 0.934 10 C 0.061 3.939 11 N -0.896 5.896 12 Si 0.890 3.110 13 H -0.281 1.281 14 H -0.287 1.287 15 H -0.274 1.274 16 C 0.544 3.456 17 O -0.538 6.538 18 C -0.201 4.201 19 H 0.138 0.862 20 C -0.148 4.148 21 C -0.095 4.095 22 H 0.103 0.897 23 C -0.122 4.122 24 C -0.178 4.178 25 C -0.185 4.185 26 H 0.036 0.964 27 H 0.088 0.912 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.056 0.944 32 H 0.053 0.947 33 H 0.087 0.913 34 H 0.073 0.927 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.036 0.964 38 H 0.041 0.959 39 H 0.261 0.739 40 H 0.103 0.897 41 H 0.097 0.903 42 H 0.136 0.864 43 H 0.088 0.912 44 H 0.091 0.909 45 H 0.090 0.910 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.876 -10.047 -2.208 15.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.177 4.177 3 C 0.081 3.919 4 C -0.208 4.208 5 C -0.236 4.236 6 N -0.315 5.315 7 C 0.123 3.877 8 C -0.556 4.556 9 H 0.084 0.916 10 C -0.141 4.141 11 N -0.535 5.535 12 Si 0.718 3.282 13 H -0.207 1.207 14 H -0.213 1.213 15 H -0.199 1.199 16 C 0.331 3.669 17 O -0.417 6.417 18 C -0.222 4.222 19 H 0.155 0.845 20 C -0.186 4.186 21 C -0.114 4.114 22 H 0.121 0.879 23 C -0.140 4.140 24 C -0.215 4.215 25 C -0.222 4.222 26 H 0.055 0.945 27 H 0.106 0.894 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.089 0.911 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.106 0.894 34 H 0.091 0.909 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.054 0.946 38 H 0.059 0.941 39 H 0.071 0.929 40 H 0.122 0.878 41 H 0.115 0.885 42 H 0.153 0.847 43 H 0.106 0.894 44 H 0.110 0.890 45 H 0.108 0.892 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 11.627 -9.518 -1.701 15.121 hybrid contribution -0.992 -0.284 0.003 1.032 sum 10.634 -9.802 -1.698 14.562 Atomic orbital electron populations 1.22102 0.94706 1.00128 1.05111 1.22238 0.97938 0.95926 1.01580 1.20300 0.93163 0.92628 0.85762 1.22126 1.03646 0.99406 0.95582 1.22717 0.95892 1.02840 1.02130 1.48198 1.45215 1.33956 1.04117 1.19349 0.86679 0.83436 0.98279 1.21589 0.92583 0.93937 1.47513 0.91603 1.24906 0.98933 0.94775 0.95454 1.69939 1.32137 1.01329 1.50123 0.86617 0.84331 0.78581 0.78634 1.20717 1.21302 1.19892 1.19110 0.79937 0.84040 0.83850 1.90557 1.60806 1.58669 1.31651 1.23265 1.02271 1.00016 0.96624 0.84458 1.22997 1.00607 0.95962 0.98997 1.21685 0.92338 0.98144 0.99238 0.87905 1.22126 0.94946 0.96804 1.00108 1.22840 1.02632 0.96824 0.99159 1.22920 1.01689 1.02295 0.95265 0.94482 0.89390 0.92405 0.92262 0.91098 0.92449 0.92800 0.89433 0.90857 0.92170 0.92228 0.94596 0.94105 0.92917 0.87837 0.88500 0.84663 0.89394 0.89044 0.89175 0.89416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.78 9.23 37.16 0.34 -2.44 16 2 C -0.14 -2.06 4.66 -26.73 -0.12 -2.19 16 3 C 0.17 2.74 0.74 -131.82 -0.10 2.65 16 4 C -0.15 -2.47 6.41 37.16 0.24 -2.24 16 5 C -0.18 -2.42 8.17 37.16 0.30 -2.12 16 6 N -0.58 -12.07 2.01 -160.18 -0.32 -12.40 16 7 C 0.24 6.13 4.45 -5.19 -0.02 6.10 16 8 C -0.52 -14.07 8.54 -34.44 -0.29 -14.37 16 9 H 0.07 1.78 4.97 -52.49 -0.26 1.52 16 10 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 11 N -0.90 -26.34 13.29 55.43 0.74 -25.60 16 12 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 13 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 14 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 15 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 16 C 0.54 11.24 6.62 -10.98 -0.07 11.17 16 17 O -0.54 -13.23 13.38 5.56 0.07 -13.16 16 18 C -0.20 -3.13 2.98 -91.77 -0.27 -3.41 16 19 H 0.14 1.87 3.23 -51.93 -0.17 1.70 16 20 C -0.15 -2.08 9.80 -26.69 -0.26 -2.34 16 21 C -0.10 -1.32 5.85 -90.58 -0.53 -1.85 16 22 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 23 C -0.12 -1.88 4.84 -90.61 -0.44 -2.32 16 24 C -0.18 -2.46 10.26 -26.69 -0.27 -2.73 16 25 C -0.18 -2.31 10.25 -26.69 -0.27 -2.59 16 26 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.09 1.82 4.36 -51.93 -0.23 1.60 16 28 H 0.06 0.98 6.29 -51.93 -0.33 0.66 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.07 1.03 4.80 -51.92 -0.25 0.78 16 31 H 0.06 0.96 7.52 -51.93 -0.39 0.57 16 32 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.09 1.68 5.50 -51.92 -0.29 1.40 16 34 H 0.07 0.95 4.34 -51.93 -0.23 0.73 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.04 1.06 7.59 -51.93 -0.39 0.66 16 38 H 0.04 1.04 5.47 -51.93 -0.28 0.76 16 39 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 40 H 0.10 1.66 8.05 -51.93 -0.42 1.24 16 41 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.14 2.58 5.83 -51.93 -0.30 2.28 16 43 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 44 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 45 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 46 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 343.60 15.07 5.18 5.18 Total: -1.00 -30.49 343.60 -8.55 -39.04 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -7.32 Total: 7.27 kcal Atomic # 6 Polarization: -15.18 SS G_CDS: -1.88 Total: -17.05 kcal Atomic # 7 Polarization: -38.41 SS G_CDS: 0.41 Total: -38.00 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: 0.07 Total: -13.16 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.49 -8.55 -39.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189941457.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.740 kcal (2) G-P(sol) polarization free energy of solvation -30.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds