Wall clock time and date at job start Tue Mar 31 2020 01:47:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47108 * 2 1 4 4 C 1.53002 * 109.46999 * 306.78667 * 3 2 1 5 5 C 1.53004 * 109.47549 * 186.78516 * 3 2 1 6 6 N 1.46504 * 109.47228 * 66.78324 * 3 2 1 7 7 C 1.46494 * 119.99970 * 250.27110 * 6 3 2 8 8 C 1.50702 * 109.47281 * 98.65122 * 7 6 3 9 9 H 1.07998 * 119.99752 * 3.84907 * 8 7 6 10 10 C 1.37878 * 120.00095 * 183.84495 * 8 7 6 11 11 N 1.31516 * 120.00166 * 0.02562 * 10 8 7 12 12 Si 1.86807 * 119.99920 * 180.02562 * 10 8 7 13 13 H 1.48492 * 109.46952 * 90.00388 * 12 10 8 14 14 H 1.48497 * 109.47049 * 210.00359 * 12 10 8 15 15 H 1.48498 * 109.46915 * 330.00401 * 12 10 8 16 16 C 1.34768 * 119.99777 * 70.27064 * 6 3 2 17 17 O 1.21281 * 120.00188 * 176.80895 * 16 6 3 18 18 C 1.50699 * 120.00224 * 356.80930 * 16 6 3 19 19 H 1.08997 * 115.55001 * 337.47694 * 18 16 6 20 20 C 1.52998 * 117.50088 * 123.18999 * 18 16 6 21 21 C 1.52992 * 60.00167 * 107.49071 * 20 18 16 22 22 H 1.09001 * 117.49924 * 252.50927 * 21 20 18 23 23 C 1.52999 * 117.51820 * 107.48428 * 21 20 18 24 24 C 1.53003 * 117.49642 * 179.97438 * 23 21 20 25 25 C 1.53004 * 60.00122 * 252.50938 * 24 23 21 26 26 H 1.09006 * 109.46853 * 173.83117 * 1 2 3 27 27 H 1.09002 * 109.47252 * 293.83344 * 1 2 3 28 28 H 1.09004 * 109.47092 * 53.83253 * 1 2 3 29 29 H 1.08997 * 109.47241 * 239.99958 * 2 1 3 30 30 H 1.09005 * 109.47177 * 119.99439 * 2 1 3 31 31 H 1.08995 * 109.47307 * 180.02562 * 4 3 2 32 32 H 1.09006 * 109.46947 * 299.99637 * 4 3 2 33 33 H 1.09004 * 109.47224 * 59.99790 * 4 3 2 34 34 H 1.09003 * 109.46416 * 300.00024 * 5 3 2 35 35 H 1.08999 * 109.46588 * 59.99601 * 5 3 2 36 36 H 1.08997 * 109.47028 * 179.97438 * 5 3 2 37 37 H 1.09004 * 109.47243 * 218.65307 * 7 6 3 38 38 H 1.09007 * 109.47671 * 338.65173 * 7 6 3 39 39 H 0.96997 * 119.99624 * 179.97438 * 11 10 8 40 40 H 1.09006 * 117.50033 * 214.98127 * 20 18 16 41 41 H 1.09000 * 117.50017 * 359.97438 * 20 18 16 42 42 H 1.08999 * 115.55221 * 325.69600 * 23 21 20 43 43 H 1.08999 * 117.50017 * 359.97438 * 24 23 21 44 44 H 1.09003 * 117.49484 * 145.02242 * 24 23 21 45 45 H 1.08994 * 117.49778 * 252.51382 * 25 24 23 46 46 H 1.08995 * 117.49565 * 107.49376 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.3955 2.2113 -1.1553 5 6 3.5605 1.4460 -0.1704 6 7 1.6894 2.0845 1.2694 7 6 0.6670 3.1332 1.3021 8 6 -0.6467 2.5405 1.7425 9 1 -0.6997 1.5021 2.0345 10 6 -1.7808 3.3240 1.7727 11 7 -1.7163 4.5884 1.4168 12 14 -3.4091 2.5894 2.3194 13 1 -3.5578 2.7531 3.7877 14 1 -4.5234 3.2864 1.6282 15 1 -3.4404 1.1449 1.9766 16 6 2.3075 1.7102 2.4070 17 8 2.0594 2.2809 3.4480 18 6 3.3069 0.5825 2.3857 19 1 3.2089 -0.1168 1.5554 20 6 4.7179 0.8792 2.8974 21 6 3.7663 0.0201 3.7324 22 1 3.3457 0.4658 4.6338 23 6 4.0532 -1.4807 3.8104 24 6 3.1016 -2.3393 4.6461 25 6 4.5130 -2.0430 5.1571 26 1 -0.3633 -1.0218 -0.1104 27 1 -0.3634 0.4153 0.9400 28 1 -0.3633 0.6065 -0.8297 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.7592 3.2388 -1.1556 32 1 1.6564 1.7337 -2.0998 33 1 0.3123 2.2088 -1.0339 34 1 4.0195 0.8983 0.6527 35 1 3.8212 0.9684 -1.1149 36 1 3.9237 2.4737 -0.1709 37 1 0.9676 3.9119 2.0031 38 1 0.5559 3.5636 0.3067 39 1 -2.5143 5.1394 1.4377 40 1 5.5487 0.3752 2.4035 41 1 4.9235 1.8902 3.2490 42 1 4.4737 -1.9265 2.9091 43 1 2.2715 -1.8348 5.1406 44 1 2.8957 -3.3502 4.2944 45 1 5.2355 -2.8589 5.1415 46 1 4.6111 -1.3437 5.9874 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189941478.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:47:36 Heat of formation + Delta-G solvation = 27.124868 kcal Electronic energy + Delta-G solvation = -23648.622270 eV Core-core repulsion = 20540.701767 eV Total energy + Delta-G solvation = -3107.920503 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.16811 -37.99171 -36.65098 -34.92997 -33.01387 -31.67913 -29.85317 -28.50141 -26.29719 -24.32425 -23.47924 -22.96599 -22.37648 -21.98989 -20.39560 -19.80535 -17.84681 -16.66522 -16.16017 -15.70088 -15.07133 -14.67797 -14.56523 -14.26190 -13.82751 -13.63378 -13.20535 -13.02180 -12.64033 -12.28690 -12.22988 -11.95320 -11.66487 -11.62420 -11.52070 -11.33237 -11.12468 -11.07184 -11.01572 -10.82621 -10.64213 -10.45519 -10.44143 -10.37908 -10.01694 -9.82988 -9.77806 -9.28088 -9.22727 -8.76750 -8.36850 -7.52179 -5.99452 -4.01420 3.15816 3.33266 3.39651 3.42008 3.73491 3.92325 4.38318 4.46499 4.59402 4.85565 4.92391 5.07424 5.12041 5.27260 5.32616 5.34938 5.37187 5.40650 5.42664 5.56674 5.61945 5.76100 5.80397 5.89074 5.92949 5.98332 6.08015 6.12288 6.14022 6.18598 6.20659 6.27579 6.41036 6.42252 6.47454 6.61604 6.67960 6.89378 7.14272 7.20021 7.54887 7.69631 8.00612 8.30215 8.56519 8.97672 9.22864 9.62119 11.08575 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.016020 B = 0.006125 C = 0.005371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.414614 B = 4570.021874 C = 5212.197530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.133 4.133 3 C 0.168 3.832 4 C -0.151 4.151 5 C -0.184 4.184 6 N -0.583 5.583 7 C 0.240 3.760 8 C -0.513 4.513 9 H 0.064 0.936 10 C 0.060 3.940 11 N -0.896 5.896 12 Si 0.890 3.110 13 H -0.281 1.281 14 H -0.287 1.287 15 H -0.274 1.274 16 C 0.538 3.462 17 O -0.544 6.544 18 C -0.187 4.187 19 H 0.134 0.866 20 C -0.151 4.151 21 C -0.098 4.098 22 H 0.115 0.885 23 C -0.121 4.121 24 C -0.177 4.177 25 C -0.177 4.177 26 H 0.034 0.966 27 H 0.092 0.908 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.059 0.941 36 H 0.057 0.943 37 H 0.031 0.969 38 H 0.048 0.952 39 H 0.261 0.739 40 H 0.098 0.902 41 H 0.099 0.901 42 H 0.103 0.897 43 H 0.097 0.903 44 H 0.093 0.907 45 H 0.092 0.908 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.176 -11.714 -2.415 17.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.171 4.171 3 C 0.082 3.918 4 C -0.208 4.208 5 C -0.242 4.242 6 N -0.314 5.314 7 C 0.121 3.879 8 C -0.552 4.552 9 H 0.082 0.918 10 C -0.141 4.141 11 N -0.536 5.536 12 Si 0.718 3.282 13 H -0.207 1.207 14 H -0.213 1.213 15 H -0.199 1.199 16 C 0.325 3.675 17 O -0.422 6.422 18 C -0.207 4.207 19 H 0.151 0.849 20 C -0.189 4.189 21 C -0.116 4.116 22 H 0.133 0.867 23 C -0.140 4.140 24 C -0.214 4.214 25 C -0.214 4.214 26 H 0.054 0.946 27 H 0.111 0.889 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.104 0.896 34 H 0.100 0.900 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.049 0.951 38 H 0.065 0.935 39 H 0.071 0.929 40 H 0.116 0.884 41 H 0.117 0.883 42 H 0.121 0.879 43 H 0.115 0.885 44 H 0.111 0.889 45 H 0.110 0.890 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 11.898 -11.206 -1.921 16.457 hybrid contribution -1.034 -0.361 0.112 1.100 sum 10.864 -11.566 -1.810 15.971 Atomic orbital electron populations 1.22176 0.94540 0.99948 1.05754 1.22120 0.98012 0.95847 1.01115 1.20310 0.93444 0.92627 0.85419 1.22145 1.03357 0.99619 0.95710 1.22814 0.95779 1.02877 1.02686 1.48218 1.39138 1.38917 1.05110 1.19387 0.84556 0.85512 0.98473 1.21500 0.92790 0.96923 1.43978 0.91799 1.24894 0.98899 0.94793 0.95505 1.69929 1.29249 1.05924 1.48502 0.86614 0.83448 0.79196 0.78908 1.20696 1.21281 1.19873 1.19229 0.81118 0.83294 0.83900 1.90650 1.64885 1.55745 1.30893 1.22983 0.96813 1.01506 0.99442 0.84921 1.22983 0.91407 1.01437 1.03031 1.21814 1.02501 0.91885 0.95441 0.86716 1.21712 1.04346 0.92697 0.95200 1.22953 0.93782 1.00536 1.04127 1.22923 0.97755 1.03169 0.97557 0.94648 0.88947 0.92262 0.92335 0.91670 0.92329 0.92737 0.89646 0.90034 0.92246 0.92405 0.95061 0.93459 0.92895 0.88367 0.88287 0.87933 0.88467 0.88900 0.88990 0.88716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.94 9.17 37.16 0.34 -2.60 16 2 C -0.13 -2.03 4.76 -26.73 -0.13 -2.16 16 3 C 0.17 2.78 0.72 -131.81 -0.09 2.69 16 4 C -0.15 -2.50 6.58 37.16 0.24 -2.25 16 5 C -0.18 -2.50 8.08 37.16 0.30 -2.20 16 6 N -0.58 -12.24 2.10 -160.18 -0.34 -12.58 16 7 C 0.24 6.13 4.57 -5.20 -0.02 6.11 16 8 C -0.51 -14.08 8.07 -34.44 -0.28 -14.36 16 9 H 0.06 1.77 5.50 -52.49 -0.29 1.48 16 10 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 11 N -0.90 -26.27 13.29 55.43 0.74 -25.54 16 12 Si 0.89 21.83 29.54 -169.99 -5.02 16.80 16 13 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 14 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 15 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 16 C 0.54 11.41 6.87 -10.99 -0.08 11.34 16 17 O -0.54 -13.97 16.03 5.56 0.09 -13.88 16 18 C -0.19 -2.93 2.90 -91.77 -0.27 -3.20 16 19 H 0.13 1.87 3.75 -51.93 -0.19 1.67 16 20 C -0.15 -2.00 9.20 -26.74 -0.25 -2.24 16 21 C -0.10 -1.40 5.36 -90.62 -0.49 -1.89 16 22 H 0.11 1.92 7.72 -51.93 -0.40 1.52 16 23 C -0.12 -1.41 5.85 -90.62 -0.53 -1.94 16 24 C -0.18 -1.99 10.25 -26.73 -0.27 -2.27 16 25 C -0.18 -1.80 10.25 -26.73 -0.27 -2.07 16 26 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.09 1.98 4.27 -51.93 -0.22 1.75 16 28 H 0.06 1.04 5.96 -51.93 -0.31 0.73 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.99 5.16 -51.93 -0.27 0.72 16 31 H 0.06 0.99 7.50 -51.93 -0.39 0.61 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.08 1.63 5.32 -51.93 -0.28 1.35 16 34 H 0.08 1.05 3.33 -51.93 -0.17 0.88 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.03 0.92 7.65 -51.93 -0.40 0.53 16 38 H 0.05 1.21 5.30 -51.92 -0.27 0.93 16 39 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 40 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 42 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 44 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 LS Contribution 347.84 15.07 5.24 5.24 Total: -1.00 -31.12 347.84 -8.58 -39.70 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -7.40 Total: 5.70 kcal Atomic # 6 Polarization: -13.55 SS G_CDS: -1.89 Total: -15.44 kcal Atomic # 7 Polarization: -38.52 SS G_CDS: 0.40 Total: -38.12 kcal Atomic # 8 Polarization: -13.97 SS G_CDS: 0.09 Total: -13.88 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.12 -8.58 -39.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189941478.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.821 kcal (2) G-P(sol) polarization free energy of solvation -31.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds