Wall clock time and date at job start Tue Mar 31 2020 01:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52996 * 109.46959 * 2 1 4 4 C 1.52997 * 109.47119 * 184.62923 * 3 2 1 5 5 C 1.53005 * 109.46959 * 64.63629 * 3 2 1 6 6 N 1.46496 * 109.47536 * 304.63578 * 3 2 1 7 7 C 1.46505 * 119.99918 * 103.03992 * 6 3 2 8 8 C 1.50704 * 109.47042 * 86.91888 * 7 6 3 9 9 H 1.08003 * 119.99961 * 0.02562 * 8 7 6 10 10 C 1.37874 * 119.99810 * 179.97438 * 8 7 6 11 11 N 1.31511 * 120.00224 * 359.97438 * 10 8 7 12 12 Si 1.86806 * 119.99698 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47204 * 89.99990 * 12 10 8 14 14 H 1.48506 * 109.46667 * 210.00082 * 12 10 8 15 15 H 1.48496 * 109.47088 * 329.99764 * 12 10 8 16 16 C 1.34772 * 119.99943 * 283.03806 * 6 3 2 17 17 O 1.21277 * 120.00177 * 183.16345 * 16 6 3 18 18 C 1.50708 * 119.99889 * 3.16713 * 16 6 3 19 19 H 1.09000 * 115.54610 * 42.02412 * 18 16 6 20 20 C 1.52997 * 117.49754 * 256.35253 * 18 16 6 21 21 C 1.52998 * 117.49860 * 187.69280 * 18 16 6 22 22 H 1.09003 * 117.49804 * 359.97438 * 21 18 16 23 23 C 1.53001 * 117.49908 * 214.98253 * 21 18 16 24 24 C 1.52995 * 117.49954 * 128.74852 * 23 21 18 25 25 C 1.52998 * 117.50008 * 60.08330 * 23 21 18 26 26 H 1.09004 * 109.46880 * 184.71487 * 1 2 3 27 27 H 1.08995 * 109.47011 * 304.71772 * 1 2 3 28 28 H 1.09004 * 109.46456 * 64.71832 * 1 2 3 29 29 H 1.09003 * 109.47107 * 240.00296 * 2 1 3 30 30 H 1.08998 * 109.46580 * 120.00212 * 2 1 3 31 31 H 1.08998 * 109.47855 * 277.63175 * 4 3 2 32 32 H 1.09003 * 109.46777 * 37.63120 * 4 3 2 33 33 H 1.09002 * 109.47413 * 157.62658 * 4 3 2 34 34 H 1.09000 * 109.47235 * 179.97438 * 5 3 2 35 35 H 1.09002 * 109.47210 * 299.99489 * 5 3 2 36 36 H 1.09001 * 109.47266 * 59.99737 * 5 3 2 37 37 H 1.09006 * 109.46547 * 206.91477 * 7 6 3 38 38 H 1.08995 * 109.47286 * 326.91445 * 7 6 3 39 39 H 0.97001 * 120.00518 * 180.02562 * 11 10 8 40 40 H 1.09005 * 117.49667 * 359.97438 * 20 18 16 41 41 H 1.08996 * 117.49737 * 145.02193 * 20 18 16 42 42 H 1.09005 * 115.54512 * 274.41252 * 23 21 18 43 43 H 1.08995 * 117.50279 * 359.97438 * 24 23 21 44 44 H 1.09003 * 117.50055 * 145.02454 * 24 23 21 45 45 H 1.08997 * 117.49424 * 214.98099 * 25 23 21 46 46 H 1.08996 * 117.50269 * 359.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5656 1.4441 -0.1164 5 6 1.6274 2.1293 1.3035 6 7 1.4627 2.1646 -1.1364 7 6 0.3563 3.1010 -0.9235 8 6 0.9080 4.4604 -0.5785 9 1 1.9760 4.6117 -0.5237 10 6 0.0494 5.5110 -0.3339 11 7 -1.2510 5.3271 -0.4021 12 14 0.7333 7.1961 0.0931 13 1 0.9374 7.9778 -1.1530 14 1 -0.2251 7.9105 0.9743 15 1 2.0312 7.0396 0.7974 16 6 1.9495 1.9675 -2.3776 17 8 1.5106 2.6073 -3.3097 18 6 3.0391 0.9520 -2.6072 19 1 2.9244 0.0101 -2.0708 20 6 4.4608 1.4767 -2.8176 21 6 3.6748 0.9002 -3.9979 22 1 3.3047 1.6004 -4.7469 23 6 4.1015 -0.4697 -4.5291 24 6 3.6160 -0.8691 -5.9239 25 6 3.0160 -1.5368 -4.6839 26 1 -0.3633 -1.0242 0.0845 27 1 -0.3633 0.5853 0.8447 28 1 -0.3632 0.4389 -0.9293 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 4.0053 1.2807 0.8674 32 1 3.8792 0.6477 -0.7914 33 1 3.8991 2.4049 -0.5084 34 1 1.9911 3.1568 1.3038 35 1 0.5406 2.1282 1.3865 36 1 2.0570 1.5920 2.1491 37 1 -0.2403 3.1712 -1.8331 38 1 -0.2692 2.7444 -0.1053 39 1 -1.8551 6.0663 -0.2303 40 1 4.6080 2.5564 -2.7904 41 1 5.2815 0.8797 -2.4200 42 1 5.0948 -0.8023 -4.2275 43 1 2.9923 -0.1561 -6.4630 44 1 4.2896 -1.4649 -6.5399 45 1 3.2952 -2.5713 -4.4847 46 1 1.9979 -1.2630 -4.4070 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189941499.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:47:39 Heat of formation + Delta-G solvation = 16.416849 kcal Electronic energy + Delta-G solvation = -23648.432938 eV Core-core repulsion = 20540.048101 eV Total energy + Delta-G solvation = -3108.384838 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.18256 -37.98730 -36.62612 -34.88362 -33.06732 -31.61446 -29.96301 -28.39249 -26.17848 -24.43761 -23.60297 -22.88874 -22.42967 -21.92250 -20.54916 -19.56916 -17.84144 -16.55200 -15.94997 -15.92129 -15.17130 -14.82203 -14.46686 -14.24954 -14.00151 -13.64546 -13.20513 -13.05867 -12.62213 -12.35820 -12.11626 -11.85935 -11.68972 -11.61860 -11.45680 -11.24656 -11.18565 -11.09514 -11.00943 -10.81273 -10.67342 -10.57580 -10.48069 -10.31772 -10.06884 -9.94977 -9.76497 -9.52345 -9.33052 -8.80230 -8.38010 -7.54078 -6.00070 -4.03190 3.26002 3.32373 3.38796 3.40497 3.64697 3.99963 4.18347 4.47130 4.67342 4.87498 4.92130 5.04788 5.06975 5.21285 5.32224 5.33939 5.36006 5.40087 5.54264 5.62410 5.65645 5.66703 5.80693 5.86766 5.91503 5.93651 6.07207 6.13274 6.14020 6.20159 6.21261 6.26598 6.38150 6.42776 6.45130 6.49834 6.62410 6.75953 7.06922 7.22054 7.51811 7.65907 7.97118 8.30071 8.56530 8.96050 9.21097 9.60933 11.07779 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.018661 B = 0.005664 C = 0.005101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.125332 B = 4942.443675 C = 5488.221124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.132 4.132 3 C 0.169 3.831 4 C -0.169 4.169 5 C -0.147 4.147 6 N -0.581 5.581 7 C 0.245 3.755 8 C -0.516 4.516 9 H 0.056 0.944 10 C 0.061 3.939 11 N -0.895 5.895 12 Si 0.893 3.107 13 H -0.281 1.281 14 H -0.287 1.287 15 H -0.275 1.275 16 C 0.534 3.466 17 O -0.545 6.545 18 C -0.173 4.173 19 H 0.125 0.875 20 C -0.149 4.149 21 C -0.104 4.104 22 H 0.115 0.885 23 C -0.122 4.122 24 C -0.177 4.177 25 C -0.178 4.178 26 H 0.044 0.956 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.055 0.945 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.078 0.922 35 H 0.068 0.932 36 H 0.048 0.952 37 H 0.039 0.961 38 H 0.037 0.963 39 H 0.262 0.738 40 H 0.098 0.902 41 H 0.098 0.902 42 H 0.104 0.896 43 H 0.096 0.904 44 H 0.091 0.909 45 H 0.091 0.909 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.178 -14.064 -1.033 17.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.170 4.170 3 C 0.083 3.917 4 C -0.227 4.227 5 C -0.205 4.205 6 N -0.312 5.312 7 C 0.126 3.874 8 C -0.555 4.555 9 H 0.074 0.926 10 C -0.141 4.141 11 N -0.535 5.535 12 Si 0.721 3.279 13 H -0.207 1.207 14 H -0.212 1.212 15 H -0.200 1.200 16 C 0.321 3.679 17 O -0.424 6.424 18 C -0.194 4.194 19 H 0.142 0.858 20 C -0.187 4.187 21 C -0.123 4.123 22 H 0.133 0.867 23 C -0.140 4.140 24 C -0.213 4.213 25 C -0.215 4.215 26 H 0.063 0.937 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.097 0.903 35 H 0.087 0.913 36 H 0.067 0.933 37 H 0.057 0.943 38 H 0.055 0.945 39 H 0.072 0.928 40 H 0.117 0.883 41 H 0.117 0.883 42 H 0.122 0.878 43 H 0.114 0.886 44 H 0.110 0.890 45 H 0.109 0.891 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 9.732 -13.605 -1.467 16.792 hybrid contribution 0.278 0.990 0.371 1.093 sum 10.010 -12.615 -1.096 16.141 Atomic orbital electron populations 1.21789 0.95396 1.00506 1.03080 1.22094 0.97007 0.96567 1.01373 1.20294 0.92550 0.90796 0.88082 1.22753 0.94971 1.03133 1.01814 1.22116 1.02789 1.01867 0.93685 1.48254 1.35848 1.42319 1.04774 1.19302 0.83891 0.86441 0.97730 1.21406 0.93069 0.94299 1.46761 0.92601 1.24905 0.94765 0.98741 0.95655 1.69927 1.01705 1.32070 1.49750 0.86581 0.78664 0.84372 0.78287 1.20693 1.21246 1.19986 1.19352 0.82663 0.82668 0.83223 1.90652 1.60514 1.49016 1.42170 1.22724 0.94680 1.01106 1.00864 0.85776 1.23116 0.92671 1.01533 1.01338 1.21941 1.02529 0.96357 0.91458 0.86667 1.21744 0.98267 0.94095 0.99869 1.22980 1.03859 1.03795 0.90714 1.22977 0.98899 0.97126 1.02526 0.93675 0.92093 0.92215 0.92170 0.91650 0.92556 0.91140 0.91704 0.90273 0.91268 0.93343 0.94306 0.94516 0.92849 0.88342 0.88320 0.87767 0.88598 0.89042 0.89066 0.88534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 8.76 37.16 0.33 -1.96 16 2 C -0.13 -1.85 4.87 -26.73 -0.13 -1.98 16 3 C 0.17 2.79 0.68 -131.82 -0.09 2.70 16 4 C -0.17 -2.40 6.85 37.16 0.25 -2.14 16 5 C -0.15 -2.54 7.07 37.16 0.26 -2.28 16 6 N -0.58 -12.14 1.68 -160.18 -0.27 -12.41 16 7 C 0.25 6.29 3.88 -5.19 -0.02 6.27 16 8 C -0.52 -14.32 7.82 -34.44 -0.27 -14.58 16 9 H 0.06 1.56 7.79 -52.48 -0.41 1.15 16 10 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 11 N -0.90 -26.42 13.29 55.43 0.74 -25.69 16 12 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 13 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 14 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 15 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 16 C 0.53 11.26 6.97 -10.98 -0.08 11.18 16 17 O -0.55 -14.02 15.85 5.56 0.09 -13.93 16 18 C -0.17 -2.67 3.11 -91.77 -0.29 -2.96 16 19 H 0.12 1.70 4.47 -51.93 -0.23 1.47 16 20 C -0.15 -1.99 7.53 -26.70 -0.20 -2.19 16 21 C -0.10 -1.48 5.38 -90.58 -0.49 -1.97 16 22 H 0.12 1.91 7.69 -51.93 -0.40 1.51 16 23 C -0.12 -1.37 5.87 -90.62 -0.53 -1.90 16 24 C -0.18 -1.86 10.25 -26.69 -0.27 -2.14 16 25 C -0.18 -1.93 10.18 -26.69 -0.27 -2.20 16 26 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.96 6.23 -51.93 -0.32 0.64 16 28 H 0.06 1.06 7.28 -51.93 -0.38 0.68 16 29 H 0.06 0.80 5.53 -51.93 -0.29 0.51 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.69 7.93 -51.93 -0.41 0.28 16 32 H 0.07 0.87 4.13 -51.93 -0.21 0.66 16 33 H 0.06 1.04 7.25 -51.93 -0.38 0.67 16 34 H 0.08 1.57 6.90 -51.93 -0.36 1.21 16 35 H 0.07 1.30 4.80 -51.93 -0.25 1.05 16 36 H 0.05 0.68 8.12 -51.93 -0.42 0.26 16 37 H 0.04 1.15 7.38 -51.93 -0.38 0.77 16 38 H 0.04 0.95 5.70 -51.93 -0.30 0.65 16 39 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 40 H 0.10 1.46 8.14 -51.93 -0.42 1.04 16 41 H 0.10 1.04 8.00 -51.93 -0.42 0.63 16 42 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 348.98 15.07 5.26 5.26 Total: -1.00 -31.41 348.98 -8.77 -40.17 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -7.67 Total: 4.30 kcal Atomic # 6 Polarization: -12.62 SS G_CDS: -1.89 Total: -14.51 kcal Atomic # 7 Polarization: -38.57 SS G_CDS: 0.47 Total: -38.10 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: 0.09 Total: -13.93 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.41 -8.77 -40.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189941499.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.591 kcal (2) G-P(sol) polarization free energy of solvation -31.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds