Wall clock time and date at job start Tue Mar 31 2020 01:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52996 * 109.46959 * 2 1 4 4 C 1.52997 * 109.47119 * 184.62923 * 3 2 1 5 5 C 1.53005 * 109.46959 * 64.63629 * 3 2 1 6 6 N 1.46496 * 109.47536 * 304.63578 * 3 2 1 7 7 C 1.46505 * 119.99918 * 103.03992 * 6 3 2 8 8 C 1.50704 * 109.47042 * 86.91888 * 7 6 3 9 9 H 1.08003 * 119.99961 * 0.02562 * 8 7 6 10 10 C 1.37874 * 119.99810 * 179.97438 * 8 7 6 11 11 N 1.31511 * 120.00224 * 359.97438 * 10 8 7 12 12 Si 1.86806 * 119.99698 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47204 * 89.99990 * 12 10 8 14 14 H 1.48506 * 109.46667 * 210.00082 * 12 10 8 15 15 H 1.48496 * 109.47088 * 329.99764 * 12 10 8 16 16 C 1.34772 * 119.99943 * 283.03806 * 6 3 2 17 17 O 1.21277 * 120.00177 * 183.16345 * 16 6 3 18 18 C 1.50708 * 119.99889 * 3.16713 * 16 6 3 19 19 H 1.09000 * 115.54610 * 42.02412 * 18 16 6 20 20 C 1.52997 * 117.49754 * 256.35253 * 18 16 6 21 21 C 1.52998 * 117.49860 * 187.69280 * 18 16 6 22 22 H 1.09003 * 117.49804 * 359.97438 * 21 18 16 23 23 C 1.53001 * 117.49908 * 214.98253 * 21 18 16 24 24 C 1.52995 * 117.49954 * 128.74852 * 23 21 18 25 25 C 1.52998 * 117.50008 * 60.08330 * 23 21 18 26 26 H 1.09004 * 109.46880 * 184.71487 * 1 2 3 27 27 H 1.08995 * 109.47011 * 304.71772 * 1 2 3 28 28 H 1.09004 * 109.46456 * 64.71832 * 1 2 3 29 29 H 1.09003 * 109.47107 * 240.00296 * 2 1 3 30 30 H 1.08998 * 109.46580 * 120.00212 * 2 1 3 31 31 H 1.08998 * 109.47855 * 277.63175 * 4 3 2 32 32 H 1.09003 * 109.46777 * 37.63120 * 4 3 2 33 33 H 1.09002 * 109.47413 * 157.62658 * 4 3 2 34 34 H 1.09000 * 109.47235 * 179.97438 * 5 3 2 35 35 H 1.09002 * 109.47210 * 299.99489 * 5 3 2 36 36 H 1.09001 * 109.47266 * 59.99737 * 5 3 2 37 37 H 1.09006 * 109.46547 * 206.91477 * 7 6 3 38 38 H 1.08995 * 109.47286 * 326.91445 * 7 6 3 39 39 H 0.97001 * 120.00518 * 180.02562 * 11 10 8 40 40 H 1.09005 * 117.49667 * 359.97438 * 20 18 16 41 41 H 1.08996 * 117.49737 * 145.02193 * 20 18 16 42 42 H 1.09005 * 115.54512 * 274.41252 * 23 21 18 43 43 H 1.08995 * 117.50279 * 359.97438 * 24 23 21 44 44 H 1.09003 * 117.50055 * 145.02454 * 24 23 21 45 45 H 1.08997 * 117.49424 * 214.98099 * 25 23 21 46 46 H 1.08996 * 117.50269 * 359.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5656 1.4441 -0.1164 5 6 1.6274 2.1293 1.3035 6 7 1.4627 2.1646 -1.1364 7 6 0.3563 3.1010 -0.9235 8 6 0.9080 4.4604 -0.5785 9 1 1.9760 4.6117 -0.5237 10 6 0.0494 5.5110 -0.3339 11 7 -1.2510 5.3271 -0.4021 12 14 0.7333 7.1961 0.0931 13 1 0.9374 7.9778 -1.1530 14 1 -0.2251 7.9105 0.9743 15 1 2.0312 7.0396 0.7974 16 6 1.9495 1.9675 -2.3776 17 8 1.5106 2.6073 -3.3097 18 6 3.0391 0.9520 -2.6072 19 1 2.9244 0.0101 -2.0708 20 6 4.4608 1.4767 -2.8176 21 6 3.6748 0.9002 -3.9979 22 1 3.3047 1.6004 -4.7469 23 6 4.1015 -0.4697 -4.5291 24 6 3.6160 -0.8691 -5.9239 25 6 3.0160 -1.5368 -4.6839 26 1 -0.3633 -1.0242 0.0845 27 1 -0.3633 0.5853 0.8447 28 1 -0.3632 0.4389 -0.9293 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 4.0053 1.2807 0.8674 32 1 3.8792 0.6477 -0.7914 33 1 3.8991 2.4049 -0.5084 34 1 1.9911 3.1568 1.3038 35 1 0.5406 2.1282 1.3865 36 1 2.0570 1.5920 2.1491 37 1 -0.2403 3.1712 -1.8331 38 1 -0.2692 2.7444 -0.1053 39 1 -1.8551 6.0663 -0.2303 40 1 4.6080 2.5564 -2.7904 41 1 5.2815 0.8797 -2.4200 42 1 5.0948 -0.8023 -4.2275 43 1 2.9923 -0.1561 -6.4630 44 1 4.2896 -1.4649 -6.5399 45 1 3.2952 -2.5713 -4.4847 46 1 1.9979 -1.2630 -4.4070 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189941499.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:47:39 Heat of formation + Delta-G solvation = -0.900642 kcal Electronic energy + Delta-G solvation = -23649.183881 eV Core-core repulsion = 20540.048101 eV Total energy + Delta-G solvation = -3109.135780 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.65359 -39.12441 -38.17414 -36.05671 -35.07240 -33.33729 -31.27246 -30.11957 -27.83663 -25.88545 -24.94161 -24.07443 -23.72306 -23.15383 -21.88280 -20.67833 -19.32775 -18.69237 -17.44339 -17.20118 -16.67742 -16.19039 -16.07010 -15.70591 -15.30348 -15.07536 -14.62189 -14.36706 -14.19050 -13.88690 -13.48405 -13.43853 -13.19337 -12.87320 -12.81945 -12.74869 -12.61758 -12.41256 -12.31848 -12.25041 -12.17165 -11.95039 -11.81944 -11.76992 -11.53320 -11.46090 -11.20749 -10.83409 -10.62026 -10.56671 -10.35751 -9.32533 -8.19712 -6.32339 1.33541 1.36528 1.45770 1.74343 2.24824 2.42344 2.78078 3.08549 3.10256 3.57255 3.74698 3.81719 3.91561 4.07286 4.08772 4.16140 4.22413 4.37857 4.39782 4.46437 4.56991 4.64078 4.78718 4.80296 4.84132 4.89196 4.92504 5.00892 5.02507 5.06775 5.07386 5.14918 5.22940 5.23619 5.26866 5.29145 5.32585 5.40005 5.42029 5.52844 5.61892 5.68733 5.95907 6.11760 6.74382 6.90753 7.31489 7.56070 8.87004 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.018661 B = 0.005664 C = 0.005101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.125332 B = 4942.443675 C = 5488.221124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C 0.156 3.844 4 C -0.163 4.163 5 C -0.143 4.143 6 N -0.582 5.582 7 C 0.267 3.733 8 C -0.524 4.524 9 H 0.049 0.951 10 C 0.008 3.992 11 N -0.930 5.930 12 Si 0.960 3.040 13 H -0.284 1.284 14 H -0.275 1.275 15 H -0.261 1.261 16 C 0.521 3.479 17 O -0.610 6.610 18 C -0.176 4.176 19 H 0.154 0.846 20 C -0.126 4.126 21 C -0.106 4.106 22 H 0.077 0.923 23 C -0.118 4.118 24 C -0.180 4.180 25 C -0.176 4.176 26 H 0.073 0.927 27 H 0.048 0.952 28 H 0.019 0.981 29 H 0.074 0.926 30 H 0.105 0.895 31 H 0.086 0.914 32 H 0.096 0.904 33 H 0.039 0.961 34 H 0.046 0.954 35 H 0.043 0.957 36 H 0.090 0.910 37 H -0.018 1.018 38 H 0.030 0.970 39 H 0.265 0.735 40 H 0.077 0.923 41 H 0.146 0.854 42 H 0.136 0.864 43 H 0.075 0.925 44 H 0.117 0.883 45 H 0.119 0.881 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.576 -16.618 0.461 21.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C 0.073 3.927 4 C -0.220 4.220 5 C -0.201 4.201 6 N -0.312 5.312 7 C 0.146 3.854 8 C -0.563 4.563 9 H 0.067 0.933 10 C -0.191 4.191 11 N -0.570 5.570 12 Si 0.785 3.215 13 H -0.210 1.210 14 H -0.200 1.200 15 H -0.185 1.185 16 C 0.311 3.689 17 O -0.493 6.493 18 C -0.196 4.196 19 H 0.171 0.829 20 C -0.163 4.163 21 C -0.125 4.125 22 H 0.096 0.904 23 C -0.136 4.136 24 C -0.217 4.217 25 C -0.213 4.213 26 H 0.092 0.908 27 H 0.067 0.933 28 H 0.038 0.962 29 H 0.092 0.908 30 H 0.123 0.877 31 H 0.105 0.895 32 H 0.114 0.886 33 H 0.059 0.941 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.109 0.891 37 H 0.000 1.000 38 H 0.048 0.952 39 H 0.074 0.926 40 H 0.095 0.905 41 H 0.163 0.837 42 H 0.154 0.846 43 H 0.093 0.907 44 H 0.135 0.865 45 H 0.137 0.863 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 13.157 -16.191 0.064 20.863 hybrid contribution -0.862 1.794 -0.117 1.994 sum 12.295 -14.398 -0.054 18.933 Atomic orbital electron populations 1.21766 0.96929 1.01592 1.00410 1.22081 0.95549 0.94714 1.03889 1.20759 0.94494 0.91785 0.85710 1.22713 0.92395 1.02761 1.04155 1.22070 1.01278 1.00811 0.95907 1.48289 1.34608 1.41659 1.06635 1.18681 0.85022 0.87344 0.94388 1.21603 0.92698 0.95463 1.46502 0.93256 1.25784 0.95028 1.02773 0.95497 1.70053 1.02992 1.33353 1.50612 0.85529 0.78691 0.79307 0.77991 1.21025 1.20040 1.18522 1.20408 0.83268 0.83015 0.82222 1.90610 1.62809 1.51812 1.44053 1.22583 0.93889 1.00312 1.02829 0.82932 1.23255 0.92158 1.01096 0.99834 1.21931 1.02345 0.97820 0.90413 0.90431 1.21778 0.99623 0.92093 1.00058 1.23052 1.04060 1.03707 0.90879 1.23013 0.97638 0.98338 1.02303 0.90840 0.93337 0.96189 0.90781 0.87691 0.89527 0.88601 0.94145 0.93448 0.93791 0.89116 0.99966 0.95226 0.92631 0.90454 0.83654 0.84597 0.90653 0.86517 0.86324 0.90835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.47 8.76 71.99 0.63 -3.84 16 2 C -0.12 -3.11 4.87 30.60 0.15 -2.96 16 3 C 0.16 4.97 0.68 3.60 0.00 4.98 16 4 C -0.16 -4.06 6.85 71.98 0.49 -3.57 16 5 C -0.14 -4.85 7.07 71.98 0.51 -4.34 16 6 N -0.58 -25.40 1.68 -779.07 -1.31 -26.71 16 7 C 0.27 14.75 3.88 85.63 0.33 15.08 16 8 C -0.52 -30.59 7.82 25.60 0.20 -30.39 16 9 H 0.05 2.88 7.79 -2.91 -0.02 2.85 16 10 C 0.01 0.45 5.46 84.65 0.46 0.91 16 11 N -0.93 -57.46 13.29 21.45 0.28 -57.18 16 12 Si 0.96 45.94 29.54 68.60 2.03 47.96 16 13 H -0.28 -13.69 7.11 99.48 0.71 -12.98 16 14 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 15 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 16 C 0.52 23.01 6.97 87.66 0.61 23.62 16 17 O -0.61 -34.04 15.85 -3.02 -0.05 -34.09 16 18 C -0.18 -5.22 3.11 -11.54 -0.04 -5.26 16 19 H 0.15 3.63 4.47 -2.39 -0.01 3.62 16 20 C -0.13 -3.06 7.53 30.62 0.23 -2.83 16 21 C -0.11 -2.92 5.38 -10.77 -0.06 -2.98 16 22 H 0.08 2.74 7.69 -2.39 -0.02 2.72 16 23 C -0.12 -2.28 5.87 -10.80 -0.06 -2.35 16 24 C -0.18 -3.47 10.25 30.62 0.31 -3.15 16 25 C -0.18 -3.34 10.18 30.62 0.31 -3.03 16 26 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 27 H 0.05 1.55 6.23 -2.39 -0.01 1.53 16 28 H 0.02 0.72 7.28 -2.38 -0.02 0.71 16 29 H 0.07 1.67 5.53 -2.39 -0.01 1.66 16 30 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.09 1.67 7.93 -2.39 -0.02 1.65 16 32 H 0.10 1.88 4.13 -2.39 -0.01 1.87 16 33 H 0.04 1.22 7.25 -2.39 -0.02 1.20 16 34 H 0.05 1.89 6.90 -2.39 -0.02 1.87 16 35 H 0.04 1.69 4.80 -2.39 -0.01 1.68 16 36 H 0.09 2.26 8.12 -2.39 -0.02 2.24 16 37 H -0.02 -1.17 7.38 -2.38 -0.02 -1.19 16 38 H 0.03 1.66 5.70 -2.39 -0.01 1.65 16 39 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 40 H 0.08 2.24 8.14 -2.38 -0.02 2.22 16 41 H 0.15 2.23 8.00 -2.39 -0.02 2.21 16 42 H 0.14 1.87 8.14 -2.38 -0.02 1.85 16 43 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 44 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 45 H 0.12 1.62 8.14 -2.39 -0.02 1.61 16 46 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -76.85 348.98 6.00 -70.85 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: 0.95 Total: 19.27 kcal Atomic # 6 Polarization: -24.20 SS G_CDS: 4.09 Total: -20.11 kcal Atomic # 7 Polarization: -82.86 SS G_CDS: -1.02 Total: -83.89 kcal Atomic # 8 Polarization: -34.04 SS G_CDS: -0.05 Total: -34.09 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.96 kcal Total: -76.85 6.00 -70.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189941499.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.949 kcal (2) G-P(sol) polarization free energy of solvation -76.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds