Wall clock time and date at job start Tue Mar 31 2020 01:47:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47163 * 2 1 4 4 C 1.52995 * 109.47114 * 295.65245 * 3 2 1 5 5 C 1.53000 * 109.47263 * 175.64614 * 3 2 1 6 6 N 1.46502 * 109.46781 * 55.64860 * 3 2 1 7 7 C 1.46500 * 120.00420 * 244.46946 * 6 3 2 8 8 C 1.50705 * 109.47294 * 270.00798 * 7 6 3 9 9 H 1.08002 * 119.99622 * 359.97438 * 8 7 6 10 10 C 1.37876 * 119.99755 * 179.97438 * 8 7 6 11 11 N 1.31516 * 119.99652 * 179.97438 * 10 8 7 12 12 Si 1.86794 * 120.00461 * 359.97438 * 10 8 7 13 13 H 1.48501 * 109.47386 * 89.99874 * 12 10 8 14 14 H 1.48494 * 109.47466 * 210.00422 * 12 10 8 15 15 H 1.48506 * 109.46935 * 330.00502 * 12 10 8 16 16 C 1.34782 * 120.00168 * 64.47626 * 6 3 2 17 17 O 1.21278 * 120.00364 * 186.32208 * 16 6 3 18 18 C 1.50703 * 119.99539 * 6.31608 * 16 6 3 19 19 H 1.08998 * 115.56199 * 336.41152 * 18 16 6 20 20 C 1.53004 * 117.49601 * 122.10611 * 18 16 6 21 21 C 1.53001 * 117.49473 * 190.72760 * 18 16 6 22 22 H 1.08992 * 117.50005 * 145.02260 * 21 18 16 23 23 C 1.53001 * 117.49972 * 359.97438 * 21 18 16 24 24 C 1.53002 * 117.49680 * 128.61147 * 23 21 18 25 25 C 1.52998 * 60.00064 * 252.51074 * 24 23 21 26 26 H 1.08992 * 109.47473 * 300.00038 * 1 2 3 27 27 H 1.09008 * 109.47068 * 60.00156 * 1 2 3 28 28 H 1.08998 * 109.46939 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47816 * 240.00014 * 2 1 3 30 30 H 1.08999 * 109.46853 * 120.00075 * 2 1 3 31 31 H 1.09005 * 109.47142 * 180.02562 * 4 3 2 32 32 H 1.09005 * 109.47357 * 299.99475 * 4 3 2 33 33 H 1.08998 * 109.47500 * 59.99731 * 4 3 2 34 34 H 1.08995 * 109.47326 * 300.00492 * 5 3 2 35 35 H 1.09005 * 109.46847 * 60.00745 * 5 3 2 36 36 H 1.09005 * 109.47274 * 179.97438 * 5 3 2 37 37 H 1.09009 * 109.46638 * 30.00002 * 7 6 3 38 38 H 1.08999 * 109.47651 * 150.00067 * 7 6 3 39 39 H 0.96994 * 120.00031 * 179.97438 * 11 10 8 40 40 H 1.09001 * 117.49824 * 359.97438 * 20 18 16 41 41 H 1.08998 * 117.51464 * 214.96817 * 20 18 16 42 42 H 1.09000 * 115.55402 * 274.31697 * 23 21 18 43 43 H 1.09004 * 117.49755 * 0.02562 * 24 23 21 44 44 H 1.09003 * 117.50090 * 145.02060 * 24 23 21 45 45 H 1.08999 * 117.49947 * 252.50943 * 25 24 23 46 46 H 1.09002 * 117.49681 * 107.48506 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6212 2.1315 -1.3003 5 6 3.5660 1.4439 0.1095 6 7 1.4679 2.1626 1.1404 7 6 0.5596 3.2895 0.9142 8 6 1.3550 4.5668 0.8292 9 1 2.4296 4.5415 0.9337 10 6 0.7107 5.7673 0.6181 11 7 1.4049 6.8819 0.5444 12 14 -1.1479 5.8108 0.4367 13 1 -1.7714 5.9952 1.7717 14 1 -1.5325 6.9386 -0.4494 15 1 -1.6173 4.5328 -0.1565 16 6 1.7774 1.7885 2.3977 17 8 1.2175 2.3074 3.3400 18 6 2.8191 0.7251 2.6325 19 1 2.9855 0.0383 1.8026 20 6 4.0272 1.0978 3.4943 21 6 2.9495 0.1648 4.0502 22 1 3.2017 -0.8906 4.1531 23 6 2.0126 0.7273 5.1211 24 6 1.2175 -0.2744 5.9610 25 6 0.5075 0.5665 4.8982 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8932 -0.5138 0.8900 31 1 1.9850 3.1590 -1.3005 32 1 2.0468 1.5957 -2.1488 33 1 0.5340 2.1305 -1.3783 34 1 3.8643 0.9530 1.0358 35 1 3.9917 0.9081 -0.7390 36 1 3.9294 2.4716 0.1090 37 1 0.0166 3.1369 -0.0187 38 1 -0.1487 3.3568 1.7400 39 1 0.9517 7.7265 0.3955 40 1 4.0686 2.1122 3.8911 41 1 4.9885 0.6562 3.2317 42 1 2.3540 1.6381 5.6131 43 1 1.3623 -1.3341 5.7510 44 1 1.0359 -0.0228 7.0060 45 1 -0.1413 1.3712 5.2438 46 1 0.1848 0.0599 3.9886 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189941520.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:47:43 Heat of formation + Delta-G solvation = 35.787457 kcal Electronic energy + Delta-G solvation = -24108.643641 eV Core-core repulsion = 21001.098776 eV Total energy + Delta-G solvation = -3107.544865 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.32238 -37.96788 -36.27842 -34.82144 -33.09387 -31.72718 -30.04279 -28.82561 -26.57549 -24.24795 -23.47003 -23.05956 -22.03062 -21.67201 -20.48916 -19.63354 -17.75715 -16.94158 -16.03940 -15.78329 -15.02044 -14.78116 -14.57400 -14.17737 -13.86034 -13.63382 -13.39909 -12.97218 -12.73748 -12.47889 -12.16311 -12.03021 -11.84633 -11.40346 -11.34502 -11.26726 -11.24649 -11.14192 -10.99755 -10.68778 -10.59727 -10.57518 -10.45077 -10.33523 -10.12694 -9.92142 -9.55305 -9.40855 -9.30682 -8.55661 -8.52861 -7.51282 -6.05830 -4.02735 3.21246 3.29865 3.35958 3.38382 3.80177 4.07979 4.33729 4.41872 4.84153 4.92285 5.05612 5.07594 5.19044 5.27802 5.28159 5.33673 5.46969 5.52330 5.57662 5.60527 5.75076 5.78272 5.85728 5.87951 5.89940 6.01622 6.04919 6.13696 6.17489 6.28335 6.31976 6.34713 6.36884 6.39038 6.50353 6.53594 6.66030 6.68667 6.87165 6.93640 7.05276 7.51643 7.67245 8.42897 8.53549 8.98544 9.16774 9.56130 11.07577 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.015346 B = 0.007179 C = 0.006169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.133181 B = 3899.462932 C = 4537.842410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.139 4.139 3 C 0.171 3.829 4 C -0.152 4.152 5 C -0.183 4.183 6 N -0.580 5.580 7 C 0.214 3.786 8 C -0.519 4.519 9 H 0.074 0.926 10 C 0.072 3.928 11 N -0.899 5.899 12 Si 0.872 3.128 13 H -0.275 1.275 14 H -0.286 1.286 15 H -0.266 1.266 16 C 0.541 3.459 17 O -0.528 6.528 18 C -0.194 4.194 19 H 0.134 0.866 20 C -0.148 4.148 21 C -0.099 4.099 22 H 0.106 0.894 23 C -0.098 4.098 24 C -0.203 4.203 25 C -0.129 4.129 26 H 0.059 0.941 27 H 0.056 0.944 28 H 0.046 0.954 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.085 0.915 32 H 0.053 0.947 33 H 0.061 0.939 34 H 0.078 0.922 35 H 0.056 0.944 36 H 0.067 0.933 37 H 0.033 0.967 38 H 0.033 0.967 39 H 0.263 0.737 40 H 0.101 0.899 41 H 0.098 0.902 42 H 0.102 0.898 43 H 0.084 0.916 44 H 0.085 0.915 45 H 0.090 0.910 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.403 -16.554 1.065 16.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.177 4.177 3 C 0.085 3.915 4 C -0.209 4.209 5 C -0.240 4.240 6 N -0.311 5.311 7 C 0.093 3.907 8 C -0.558 4.558 9 H 0.092 0.908 10 C -0.130 4.130 11 N -0.538 5.538 12 Si 0.699 3.301 13 H -0.201 1.201 14 H -0.212 1.212 15 H -0.191 1.191 16 C 0.328 3.672 17 O -0.405 6.405 18 C -0.215 4.215 19 H 0.151 0.849 20 C -0.186 4.186 21 C -0.118 4.118 22 H 0.124 0.876 23 C -0.117 4.117 24 C -0.240 4.240 25 C -0.166 4.166 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.065 0.935 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.104 0.896 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.096 0.904 35 H 0.075 0.925 36 H 0.086 0.914 37 H 0.051 0.949 38 H 0.051 0.949 39 H 0.073 0.927 40 H 0.120 0.880 41 H 0.117 0.883 42 H 0.120 0.880 43 H 0.103 0.897 44 H 0.104 0.896 45 H 0.109 0.891 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 2.055 -16.044 1.511 16.246 hybrid contribution -0.840 0.286 -0.341 0.950 sum 1.215 -15.759 1.169 15.849 Atomic orbital electron populations 1.21751 0.95574 1.00676 1.02700 1.22210 0.96926 0.96672 1.01914 1.20259 0.92835 0.90622 0.87770 1.22130 1.01829 1.02666 0.94314 1.22784 0.95033 1.03628 1.02554 1.47878 1.47060 1.32289 1.03895 1.19674 0.89901 0.84406 0.96676 1.21336 0.95699 0.89625 1.49127 0.90822 1.24837 0.97841 0.95473 0.94846 1.69896 1.35622 0.98221 1.50064 0.86914 0.86657 0.77927 0.78584 1.20066 1.21220 1.19092 1.19175 0.82490 0.82541 0.83019 1.90668 1.52826 1.55856 1.41134 1.23045 1.00265 1.02506 0.95651 0.84929 1.23006 0.92225 1.01283 1.02047 1.21810 0.99801 0.97739 0.92441 0.87622 1.21396 0.93146 0.98800 0.98316 1.23182 1.07207 0.96731 0.96871 1.22567 0.94986 1.00686 0.98352 0.92237 0.92497 0.93475 0.91422 0.91473 0.89627 0.92834 0.92021 0.90390 0.92532 0.91386 0.94913 0.94906 0.92706 0.88029 0.88336 0.87959 0.89715 0.89600 0.89108 0.90017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.45 37.16 0.35 -1.71 16 2 C -0.14 -1.82 4.71 -26.73 -0.13 -1.95 16 3 C 0.17 2.74 0.73 -131.82 -0.10 2.64 16 4 C -0.15 -2.50 7.07 37.16 0.26 -2.24 16 5 C -0.18 -2.67 8.15 37.16 0.30 -2.36 16 6 N -0.58 -11.57 1.45 -160.17 -0.23 -11.80 16 7 C 0.21 5.11 3.66 -5.19 -0.02 5.09 16 8 C -0.52 -14.52 9.00 -34.44 -0.31 -14.83 16 9 H 0.07 2.27 8.06 -52.49 -0.42 1.85 16 10 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 11 N -0.90 -27.51 13.96 55.43 0.77 -26.74 16 12 Si 0.87 21.59 27.47 -169.99 -4.67 16.92 16 13 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 14 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 15 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16 16 C 0.54 10.68 6.60 -10.98 -0.07 10.61 16 17 O -0.53 -12.10 11.79 5.56 0.07 -12.04 16 18 C -0.19 -2.92 3.22 -91.77 -0.30 -3.22 16 19 H 0.13 1.73 3.43 -51.93 -0.18 1.55 16 20 C -0.15 -2.04 9.52 -26.73 -0.25 -2.30 16 21 C -0.10 -1.35 5.87 -90.61 -0.53 -1.89 16 22 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 23 C -0.10 -1.50 4.31 -90.62 -0.39 -1.89 16 24 C -0.20 -2.64 10.25 -26.73 -0.27 -2.91 16 25 C -0.13 -2.05 7.35 -26.73 -0.20 -2.25 16 26 H 0.06 0.96 7.49 -51.93 -0.39 0.57 16 27 H 0.06 0.78 6.54 -51.92 -0.34 0.44 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.07 0.84 5.13 -51.93 -0.27 0.57 16 31 H 0.08 1.68 7.07 -51.93 -0.37 1.31 16 32 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.06 1.03 5.11 -51.93 -0.27 0.77 16 34 H 0.08 1.05 3.56 -51.93 -0.18 0.87 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.03 0.76 4.87 -51.92 -0.25 0.51 16 38 H 0.03 0.85 6.77 -51.93 -0.35 0.50 16 39 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 40 H 0.10 1.62 8.14 -51.93 -0.42 1.20 16 41 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 42 H 0.10 1.71 8.14 -51.93 -0.42 1.29 16 43 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 44 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.09 1.57 8.12 -51.93 -0.42 1.15 16 46 H 0.08 1.34 8.06 -51.93 -0.42 0.92 16 LS Contribution 342.86 15.07 5.17 5.17 Total: -1.00 -31.25 342.86 -8.32 -39.57 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -7.68 Total: 6.14 kcal Atomic # 6 Polarization: -15.48 SS G_CDS: -1.75 Total: -17.23 kcal Atomic # 7 Polarization: -39.08 SS G_CDS: 0.54 Total: -38.54 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: 0.07 Total: -12.04 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.67 Total: 16.92 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.25 -8.32 -39.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189941520.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.358 kcal (2) G-P(sol) polarization free energy of solvation -31.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds