Wall clock time and date at job start Tue Mar 31 2020 01:47:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47163 * 2 1 4 4 C 1.52995 * 109.47114 * 295.65245 * 3 2 1 5 5 C 1.53000 * 109.47263 * 175.64614 * 3 2 1 6 6 N 1.46502 * 109.46781 * 55.64860 * 3 2 1 7 7 C 1.46500 * 120.00420 * 244.46946 * 6 3 2 8 8 C 1.50705 * 109.47294 * 270.00798 * 7 6 3 9 9 H 1.08002 * 119.99622 * 359.97438 * 8 7 6 10 10 C 1.37876 * 119.99755 * 179.97438 * 8 7 6 11 11 N 1.31516 * 119.99652 * 179.97438 * 10 8 7 12 12 Si 1.86794 * 120.00461 * 359.97438 * 10 8 7 13 13 H 1.48501 * 109.47386 * 89.99874 * 12 10 8 14 14 H 1.48494 * 109.47466 * 210.00422 * 12 10 8 15 15 H 1.48506 * 109.46935 * 330.00502 * 12 10 8 16 16 C 1.34782 * 120.00168 * 64.47626 * 6 3 2 17 17 O 1.21278 * 120.00364 * 186.32208 * 16 6 3 18 18 C 1.50703 * 119.99539 * 6.31608 * 16 6 3 19 19 H 1.08998 * 115.56199 * 336.41152 * 18 16 6 20 20 C 1.53004 * 117.49601 * 122.10611 * 18 16 6 21 21 C 1.53001 * 117.49473 * 190.72760 * 18 16 6 22 22 H 1.08992 * 117.50005 * 145.02260 * 21 18 16 23 23 C 1.53001 * 117.49972 * 359.97438 * 21 18 16 24 24 C 1.53002 * 117.49680 * 128.61147 * 23 21 18 25 25 C 1.52998 * 60.00064 * 252.51074 * 24 23 21 26 26 H 1.08992 * 109.47473 * 300.00038 * 1 2 3 27 27 H 1.09008 * 109.47068 * 60.00156 * 1 2 3 28 28 H 1.08998 * 109.46939 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47816 * 240.00014 * 2 1 3 30 30 H 1.08999 * 109.46853 * 120.00075 * 2 1 3 31 31 H 1.09005 * 109.47142 * 180.02562 * 4 3 2 32 32 H 1.09005 * 109.47357 * 299.99475 * 4 3 2 33 33 H 1.08998 * 109.47500 * 59.99731 * 4 3 2 34 34 H 1.08995 * 109.47326 * 300.00492 * 5 3 2 35 35 H 1.09005 * 109.46847 * 60.00745 * 5 3 2 36 36 H 1.09005 * 109.47274 * 179.97438 * 5 3 2 37 37 H 1.09009 * 109.46638 * 30.00002 * 7 6 3 38 38 H 1.08999 * 109.47651 * 150.00067 * 7 6 3 39 39 H 0.96994 * 120.00031 * 179.97438 * 11 10 8 40 40 H 1.09001 * 117.49824 * 359.97438 * 20 18 16 41 41 H 1.08998 * 117.51464 * 214.96817 * 20 18 16 42 42 H 1.09000 * 115.55402 * 274.31697 * 23 21 18 43 43 H 1.09004 * 117.49755 * 0.02562 * 24 23 21 44 44 H 1.09003 * 117.50090 * 145.02060 * 24 23 21 45 45 H 1.08999 * 117.49947 * 252.50943 * 25 24 23 46 46 H 1.09002 * 117.49681 * 107.48506 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6212 2.1315 -1.3003 5 6 3.5660 1.4439 0.1095 6 7 1.4679 2.1626 1.1404 7 6 0.5596 3.2895 0.9142 8 6 1.3550 4.5668 0.8292 9 1 2.4296 4.5415 0.9337 10 6 0.7107 5.7673 0.6181 11 7 1.4049 6.8819 0.5444 12 14 -1.1479 5.8108 0.4367 13 1 -1.7714 5.9952 1.7717 14 1 -1.5325 6.9386 -0.4494 15 1 -1.6173 4.5328 -0.1565 16 6 1.7774 1.7885 2.3977 17 8 1.2175 2.3074 3.3400 18 6 2.8191 0.7251 2.6325 19 1 2.9855 0.0383 1.8026 20 6 4.0272 1.0978 3.4943 21 6 2.9495 0.1648 4.0502 22 1 3.2017 -0.8906 4.1531 23 6 2.0126 0.7273 5.1211 24 6 1.2175 -0.2744 5.9610 25 6 0.5075 0.5665 4.8982 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8932 -0.5138 0.8900 31 1 1.9850 3.1590 -1.3005 32 1 2.0468 1.5957 -2.1488 33 1 0.5340 2.1305 -1.3783 34 1 3.8643 0.9530 1.0358 35 1 3.9917 0.9081 -0.7390 36 1 3.9294 2.4716 0.1090 37 1 0.0166 3.1369 -0.0187 38 1 -0.1487 3.3568 1.7400 39 1 0.9517 7.7265 0.3955 40 1 4.0686 2.1122 3.8911 41 1 4.9885 0.6562 3.2317 42 1 2.3540 1.6381 5.6131 43 1 1.3623 -1.3341 5.7510 44 1 1.0359 -0.0228 7.0060 45 1 -0.1413 1.3712 5.2438 46 1 0.1848 0.0599 3.9886 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189941520.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:47:42 Heat of formation + Delta-G solvation = 18.360970 kcal Electronic energy + Delta-G solvation = -24109.399311 eV Core-core repulsion = 21001.098776 eV Total energy + Delta-G solvation = -3108.300534 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.70943 -39.23034 -37.72589 -36.05802 -35.07310 -33.44413 -31.26558 -30.50353 -28.17133 -25.64669 -24.72557 -24.22451 -23.50638 -23.09705 -21.77025 -20.91141 -19.13264 -19.11617 -17.51474 -17.08189 -16.60632 -16.19515 -15.92878 -15.63683 -15.27932 -15.04367 -14.76406 -14.57657 -14.23292 -13.99519 -13.58491 -13.39924 -13.30509 -12.90481 -12.82292 -12.68477 -12.46448 -12.36753 -12.33986 -12.22215 -12.04706 -11.92916 -11.82169 -11.79674 -11.64782 -11.51790 -11.12905 -10.81416 -10.70715 -10.55311 -9.96844 -9.15377 -8.33076 -6.34631 1.27549 1.31317 1.39322 1.80058 2.28610 2.35034 2.85133 3.01209 3.17693 3.63305 3.76334 3.89919 3.93041 4.01849 4.09130 4.20537 4.29785 4.33378 4.44431 4.48469 4.60064 4.63265 4.71588 4.80740 4.83337 4.86020 4.89982 4.95277 4.96179 4.99024 5.07622 5.12469 5.13573 5.19729 5.25179 5.29566 5.35403 5.38706 5.43627 5.48173 5.54391 5.58028 5.84345 6.31012 6.65911 6.92099 7.25519 7.63934 8.83944 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.015346 B = 0.007179 C = 0.006169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.133181 B = 3899.462932 C = 4537.842410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.130 4.130 3 C 0.159 3.841 4 C -0.150 4.150 5 C -0.178 4.178 6 N -0.586 5.586 7 C 0.229 3.771 8 C -0.516 4.516 9 H 0.028 0.972 10 C 0.012 3.988 11 N -0.946 5.946 12 Si 0.938 3.062 13 H -0.280 1.280 14 H -0.275 1.275 15 H -0.242 1.242 16 C 0.527 3.473 17 O -0.573 6.573 18 C -0.200 4.200 19 H 0.164 0.836 20 C -0.146 4.146 21 C -0.084 4.084 22 H 0.148 0.852 23 C -0.117 4.117 24 C -0.164 4.164 25 C -0.149 4.149 26 H 0.025 0.975 27 H 0.053 0.947 28 H 0.072 0.928 29 H 0.103 0.897 30 H 0.079 0.921 31 H 0.041 0.959 32 H 0.091 0.909 33 H 0.055 0.945 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.027 0.973 37 H 0.046 0.954 38 H 0.008 0.992 39 H 0.266 0.734 40 H 0.067 0.933 41 H 0.139 0.861 42 H 0.074 0.926 43 H 0.114 0.886 44 H 0.095 0.905 45 H 0.061 0.939 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.637 -20.825 0.210 20.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.168 4.168 3 C 0.075 3.925 4 C -0.207 4.207 5 C -0.235 4.235 6 N -0.317 5.317 7 C 0.107 3.893 8 C -0.554 4.554 9 H 0.046 0.954 10 C -0.185 4.185 11 N -0.587 5.587 12 Si 0.761 3.239 13 H -0.206 1.206 14 H -0.200 1.200 15 H -0.165 1.165 16 C 0.317 3.683 17 O -0.453 6.453 18 C -0.220 4.220 19 H 0.181 0.819 20 C -0.183 4.183 21 C -0.102 4.102 22 H 0.166 0.834 23 C -0.135 4.135 24 C -0.201 4.201 25 C -0.187 4.187 26 H 0.045 0.955 27 H 0.072 0.928 28 H 0.091 0.909 29 H 0.122 0.878 30 H 0.098 0.902 31 H 0.061 0.939 32 H 0.110 0.890 33 H 0.074 0.926 34 H 0.111 0.889 35 H 0.111 0.889 36 H 0.047 0.953 37 H 0.064 0.936 38 H 0.026 0.974 39 H 0.075 0.925 40 H 0.085 0.915 41 H 0.157 0.843 42 H 0.092 0.908 43 H 0.132 0.868 44 H 0.114 0.886 45 H 0.079 0.921 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.310 -20.353 0.632 20.494 hybrid contribution -0.845 1.678 -0.042 1.879 sum 1.465 -18.676 0.590 18.742 Atomic orbital electron populations 1.21743 0.96230 1.01787 1.00929 1.22169 0.96263 0.94121 1.04208 1.20677 0.93775 0.92207 0.85832 1.22096 1.01526 1.00784 0.96290 1.22760 0.93884 1.01875 1.05002 1.47965 1.46665 1.31426 1.05667 1.19218 0.89776 0.84330 0.95995 1.21503 0.93893 0.91864 1.48181 0.95411 1.25735 1.03154 0.94988 0.94635 1.70045 1.37871 0.99001 1.51774 0.85861 0.80191 0.79316 0.78505 1.20594 1.20011 1.16491 1.20091 0.82841 0.83173 0.82230 1.90652 1.54469 1.57724 1.42415 1.23005 0.99375 1.01824 0.97773 0.81879 1.23103 0.93750 1.00150 1.01314 1.21999 0.98417 0.99492 0.90293 0.83439 1.21427 0.93051 0.99171 0.99876 1.23247 1.03045 0.97429 0.96373 1.22390 0.95238 1.01332 0.99720 0.95537 0.92772 0.90905 0.87820 0.90240 0.93943 0.89000 0.92580 0.88933 0.88854 0.95327 0.93606 0.97416 0.92519 0.91463 0.84283 0.90812 0.86757 0.88637 0.92066 0.90598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.71 9.45 71.98 0.68 -3.03 16 2 C -0.13 -2.88 4.71 30.59 0.14 -2.74 16 3 C 0.16 4.86 0.73 3.60 0.00 4.87 16 4 C -0.15 -4.78 7.07 71.98 0.51 -4.27 16 5 C -0.18 -4.85 8.15 71.98 0.59 -4.26 16 6 N -0.59 -23.87 1.45 -779.06 -1.13 -25.01 16 7 C 0.23 11.39 3.66 85.63 0.31 11.70 16 8 C -0.52 -30.59 9.00 25.60 0.23 -30.36 16 9 H 0.03 1.85 8.06 -2.91 -0.02 1.83 16 10 C 0.01 0.74 5.47 84.65 0.46 1.21 16 11 N -0.95 -60.72 13.96 21.45 0.30 -60.42 16 12 Si 0.94 45.88 27.47 68.60 1.88 47.76 16 13 H -0.28 -13.88 7.11 99.48 0.71 -13.18 16 14 H -0.27 -12.88 7.11 99.48 0.71 -12.17 16 15 H -0.24 -10.74 6.54 99.48 0.65 -10.09 16 16 C 0.53 21.29 6.60 87.66 0.58 21.87 16 17 O -0.57 -27.81 11.79 -3.02 -0.04 -27.84 16 18 C -0.20 -5.62 3.22 -11.54 -0.04 -5.66 16 19 H 0.16 3.54 3.43 -2.39 -0.01 3.54 16 20 C -0.15 -3.76 9.52 30.60 0.29 -3.47 16 21 C -0.08 -2.05 5.87 -10.79 -0.06 -2.12 16 22 H 0.15 2.47 8.14 -2.39 -0.02 2.45 16 23 C -0.12 -3.52 4.31 -10.79 -0.05 -3.57 16 24 C -0.16 -3.89 10.25 30.59 0.31 -3.58 16 25 C -0.15 -4.84 7.35 30.59 0.22 -4.62 16 26 H 0.03 0.82 7.49 -2.39 -0.02 0.80 16 27 H 0.05 1.35 6.54 -2.38 -0.02 1.34 16 28 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.10 1.65 8.14 -2.38 -0.02 1.63 16 30 H 0.08 1.60 5.13 -2.39 -0.01 1.58 16 31 H 0.04 1.71 7.07 -2.38 -0.02 1.69 16 32 H 0.09 2.18 8.14 -2.38 -0.02 2.16 16 33 H 0.06 1.82 5.11 -2.39 -0.01 1.81 16 34 H 0.09 2.22 3.56 -2.39 -0.01 2.21 16 35 H 0.09 1.85 8.14 -2.38 -0.02 1.83 16 36 H 0.03 0.99 8.14 -2.38 -0.02 0.97 16 37 H 0.05 2.15 4.87 -2.38 -0.01 2.14 16 38 H 0.01 0.43 6.77 -2.39 -0.02 0.41 16 39 H 0.27 15.94 8.31 -92.71 -0.77 15.17 16 40 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 41 H 0.14 2.47 8.14 -2.39 -0.02 2.45 16 42 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 43 H 0.11 2.09 8.14 -2.38 -0.02 2.07 16 44 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 45 H 0.06 2.29 8.12 -2.39 -0.02 2.27 16 46 H 0.08 2.50 8.06 -2.39 -0.02 2.48 16 Total: -1.00 -76.01 342.86 6.10 -69.91 By element: Atomic # 1 Polarization: 22.72 SS G_CDS: 0.90 Total: 23.62 kcal Atomic # 6 Polarization: -32.21 SS G_CDS: 4.19 Total: -28.02 kcal Atomic # 7 Polarization: -84.60 SS G_CDS: -0.83 Total: -85.43 kcal Atomic # 8 Polarization: -27.81 SS G_CDS: -0.04 Total: -27.84 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 1.88 Total: 47.76 kcal Total: -76.01 6.10 -69.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189941520.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.267 kcal (2) G-P(sol) polarization free energy of solvation -76.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds